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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00063713 ID=TCONS_00063713|Name=TCONS_00063713|organism=Clytia hemisphaerica|type=transcript|length=1106bp GTGGCATGGAACAACAGCAAATTGTCTGTTTCGAAAGATATGAAAATCGT TGATAGAGTGCGCTTTTTTAAGGGTGATGGACCTGCGTGTCAACTAGAAG CAGGCCATCAGAAAGATGGCAATTATTATTGCTGGTGTTGTGATATGAAG GCCTCTCGTAGCGCTGACCTGGCCTATGTATTCGGGTGCACCAGACATTC ACTCCAAGATAAAATAAACAGATTAACCAAAACTAGcTATGGAAAACAAT GTGTACATAATCAAAAAATGTCGATACTTGATGGAATTCCAAAGGTAGAG ATCGtggaagaattgaaaaaacgtGGCGTCCAAGTCAACAAAGACCAAAA TAAAGACGTGGTTTTGAAACAGCTTGAAGATATTTTCGCAGGAGTCCAAC ACCTTCCAGCATTACTGTTCGAATCGGGAAAGACAAGCCTTGAAAAGGTC GGTTTGGAATCGTACGAAGTACTTGCATGCGACCCTTTACACACCTTCAA AGGTTTGACGACCAATCTTTACCAAGAGATCCCTCGTCACCTTCAGggcg aagaaaaaaatctttttaaggaCTCGGCGCGAGCATCCTTTCATGGCAAA GAGGCAAAAAATGGTGGAGACTACAGGCGAAGCCTGGTGGACCTGACGAT TTACTTGGATGGAGAAATGACTGATGCGTACGTCAAACTCATGAGGCAGC TCGCTGAATTACAAGAAATTGCATATTCCGGTGAAGAAAAGCGTACAGCC AAGTCGATTTTACGCTTCCACAACGTGTCATTCTTGCACGCAGACTTGAT GATTGAGCTTTTCGAAAAGCAGAAATCCATGAGCCGAAGAAAACTGTTTG GACAGTACAACCATTCGCTGACCAGTCATGCGCCAATCCAATATCGGATT CTGGATTTGGTTTCGGCAAATACTGAGCAAGAGGAGGCTGCATTCAATTT CATGAAGGAAGTCAGTAAACATGCTTCCAATCACCATCCCGATAATATAC TGCTGACCTGCTTTCTTCGTATCCAAATCCGAGAAGACTGGCAACGTCAC TTGGGCATCCTGAAAAAGGAAACAAGAAATGCTATTAGCAAACACGGCGA TTTGTT Run BLAST on NCBI protein sequence of TCONS_00063713-protein >TCONS_00063713-protein ID=TCONS_00063713-protein|Name=TCONS_00063713-protein|organism=Clytia hemisphaerica|type=polypeptide|length=368bp
VAWNNSKLSVSKDMKIVDRVRFFKGDGPACQLEAGHQKDGNYYCWCCDMK ASRSADLAYVFGCTRHSLQDKINRLTKTSYGKQCVHNQKMSILDGIPKVE IVEELKKRGVQVNKDQNKDVVLKQLEDIFAGVQHLPALLFESGKTSLEKV GLESYEVLACDPLHTFKGLTTNLYQEIPRHLQGEEKNLFKDSARASFHGK EAKNGGDYRRSLVDLTIYLDGEMTDAYVKLMRQLAELQEIAYSGEEKRTA KSILRFHNVSFLHADLMIELFEKQKSMSRRKLFGQYNHSLTSHAPIQYRI LDLVSANTEQEEAAFNFMKEVSKHASNHHPDNILLTCFLRIQIREDWQRH LGILKKETRNAISKHGDL Run BLAST on NCBI transcript from alignment at scaffold_399:75744..79555+ Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00063713 ID=TCONS_00063713|Name=TCONS_00063713|organism=Clytia hemisphaerica|type=transcript|length=3812bp|location=Sequence derived from alignment at scaffold_399:75744..79555+ (Clytia hemisphaerica) GTGGCATGGAACAACAGCAAATTGTCTGTTTCGAAAGATATGAAAATCGT
TGATAGAGTGCGCTTTTTTAAGGGTAATGAATTTCGATAGATCTTCTAAT
TTCTCTTTTTAAACCCAGGGATTTATCTAAAAAAAGNATGTCGATAGATC
TTATAATTTCTCTTTTGAAACCCAGGGATTcatctaaaaaaagtttttct
attttgaattcAATATAAAAGAAATAAGATTATACGGCCACttgatttat
ttcattttttttagtccaaattcaTATGAgatcaaaccaaaaaaaaaaaa
ctaatttgaaaacCGTGTATTAGGTCAAGCGAACCACGCATGTTTCTCGG
GGCCCATCCATATTTAGTTTgtacacagtgaagggggagGAACCAAATTG
ATTTTTGCGTGAATGCAGTTTCGCAAATTCCTAGTGGTTTCGGCCACTTC
AGATATCTCTGGTTAAAATTTAAATCTACTTACGGAAATATATCGCACGA
ACTAGAAAGAGACCGCTAAAAAAGACTAACTCTTATAATACATCCCTTct
tacagacccactggaaaaattggccgaaataacgtccccggtggaaaatt
acccCCCTCCccaatttttgtctccactaaagacaatcaaataaatattt
actattttttccatccttctgaattttctgacttaaaaacaaagaattga
aatccccagccatcaatccccatcgagtttcagtctgttCTTTTTATTAC
CACTGGCTGAAGAAATCATATCAGGTCCGTGAGAAGGGAGTGTTACAATG
TATTAAAAGGGAGGTTAGCTGGGCGCTATACACCTTATGCAGAGTTCTTC
CTAAAGTATATAGTATAACTGTCTTTATCATTTTCGCAAAATCTGTCGAA
CGAAATTTGTTCGAATTTCTTTCAAACGAAACTTTAATTTTAGGTGATGG
ACCTGCGTGTCAACTAGAAGCAGGCCATCAGAAAGATGGCAATTATTATT
GCTGGTGTTGTGATATGAAGGCCTCTCGTAGCGCTGACCTGGCCTATGTA
TTCGGGTGCACCAGACATTCACTCCAAGATAAAATAAACAGATTAACCAA
AACTAGGTAAGGAATTAAAGAGGGTCAACTTTTAACAGGCTTTTCATGTG
TGCGACCGCGGAAGTAGATCAGAAAAGCTTAATATAAATCAATGGTGATT
TAGGGGGAGGTCTGAAGTGGCAAAGTAATGTTAaacactttctttttatt
ttatcaaaaattttagcTATGGAAAACAATGTGTACATAATAAAAAAATG
TCGATACTTGATGGAATTCCAAAGGTAGCGATCGTGTAAGAATTGAAAAA
ACCAGGCGTCCAAGTCAACAAAGACCAAAATAAAGACGTGGTTTTGAAAC
AGCTGGAAGATATTTTCGCAGGTATacaccatggaggtataaagaaacag
gagaagtatgctattgtaaccaagctcgccctacgattaaaaaagttacg
atgtatgcatgctcataatctcataNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
cgggcgagcttagaatttcttttgatacattttataaaagaaatcaaaag
actttaacgaccaattaccgacacattcaactcctgtttttctttatacc
tctatgtaTACACGATGTTTCAATCCGAAAATGTTGAagcaaaaacatga
aaacagcacaaaacgttgtttttAATTATCGTCTCGGTTTCTTGTTTAGG
AGTCCAACACCTTCCAGCATTACTGTTCGAATCGGGAAAGACAAGCCTTG
AAAAGGTCGGTTTGAATCATACGAAGTACTTGGAAGCGACCCTTTACACA
CCTTCAAAGGTTTGACGACCAATCTTTACCAAGAGATCCCTCGTCACCTT
CAGggcgaagaaaaaaatctttttaaggaCTCGGCGCGAGCATCNCGTAT
TCGGGTGCACCAGACAATCACTCCAAGATAAAATAAACAGATTAACCAAA
ACTAGGTAAGGAATTAAAGAGGGCCAACTTTTAGCAGGCTTTTCATGTGT
GCGAAGTAGACCAGAAAAGCTTAATATAAATCAAATGTGATTTAGGGGGA
GGTTTGAAGTGGCAAAGTAATGTTCaacactttctttttattttatcaaa
aattttagcTATGGAAAACAATGTGTACATAATCAAAAAATGTCGATACT
TGATGGAATTCCAAAGGTAGAGATCGtggaagaattgaaaaaacgtGGCG
TCCAAGTCAACAAAGACCAAAATAAAGACGTGGTTTTGAAACAGCTTGAA
GATATTTTCGCAGGTATACACGATGTTTCAATCCGAAAATGTTGAagcaa
aaacatgaaaacagcACTTTTAATTATCTTCTCGGTTTCTTGTTTAGGAG
TCCAACACCTTCCAGCATTACTGTTCGAATCGGGAAAGACAAGCCTTGAA
AAGGTCGGTTTGGAATCGTACGAAGTACTTGCATGCGACCCTTTACACAC
CTTCAAAGGTTTGACGACCAATCTTTACCAAGAGATCCCTCGTCACCTTC
AGggcgaagaaaaaaatctttttaaggaCTCGGCGCGAGCATCCTTTCAT
GGCAAAGAGGCAAAAAATGGTGGAGACTACAGGCGAAGCCTGGTGGACCT
GACGATTTACTTGGATGGAGAAATGACTGATGCGTACGTCAAACTCATGA
GGCAGCTCGCTGAATTACAAGAAATTGCATATTCCGGTGAAGAAAAGCGT
ACAGCCAAGTCGATTTTACGCTTCCACAACGTGTCATTCTTGCACGCAGA
CTTGATGATTGAGCTTTTCGAAAAGCAGAAATCCATGAGCCGAAGAAAAC
TGTTTGGACAGTACAACCATTCGCTGACCAGTCATGCGCCAATCCAATAT
CGGATTCTGGATTTGGTTTCGGCAAATACTGAGCAAGAGGAGGCTGCATT
CAATTTCATGAAGGAAGTCAGTAAACATGCTTCCAATCACCATCCCGATA
ATATACTGCTGACCTGCTTTCTTCGTATCCAAATCCGAGAAGACTGGCAA
CGTCACTTGGGCATCCTGAAAAAGGAAACAAGAAATGCTATTAGCAAACA
CGGCGATTTGTT Coding sequence (CDS) from alignment at scaffold_399:75744..79555+ >TCONS_00063713 ID=TCONS_00063713|Name=TCONS_00063713|organism=Clytia hemisphaerica|type=CDS|length=4416bp|location=Sequence derived from alignment at scaffold_399:75744..79555+ (Clytia hemisphaerica) GTGGCATGGAACAACAGCAAATTGTCTGTTTCGAAAGATATGAAAATCGT TGATAGAGTGCGCTTTTTTAAGGGTGATGGACCTGCGTGTCAACTAGAAG CAGGCCATCAGAAAGATGGCAATTATTATTGCTGGTGTTGTGATATGAAG GCCTCTCGTAGCGCTGACCTGGCCTATGTATTCGGGTGCACCAGACATTC ACTCCAAGATAAAATAAACAGATTAACCAAAACTAGcTATGGAAAACAAT GTGTACATAATCAAAAAATGTCGATACTTGATGGAATTCCAAAGGTAGAG ATCGtggaagaattgaaaaaacgtGGCGTCCAAGTCAACAAAGACCAAAA TAAAGACGTGGTTTTGAAACAGCTTGAAGATATTTTCGCAGGAGTCCAAC ACCTTCCAGCATTACTGTTCGAATCGGGAAAGACAAGCCTTGAAAAGGTC GGTTTGGAATCGTACGAAGTACTTGCATGCGACCCTTTACACACCTTCAA AGGTTTGACGACCAATCTTTACCAAGAGATCCCTCGTCACCTTCAGggcg aagaaaaaaatctttttaaggaCTCGGCGCGAGCATCCTTTCATGGCAAA GAGGCAAAAAATGGTGGAGACTACAGGCGAAGCCTGGTGGACCTGACGAT TTACTTGGATGGAGAAATGACTGATGCGTACGTCAAACTCATGAGGCAGC TCGCTGAATTACAAGAAATTGCATATTCCGGTGAAGAAAAGCGTACAGCC AAGTCGATTTTACGCTTCCACAACGTGTCATTCTTGCACGCAGACTTGAT GATTGAGCTTTTCGAAAAGCAGAAATCCATGAGCCGAAGAAAACTGTTTG GACAGTACAACCATTCGCTGACCAGTCATGCGCCAATCCAATATCGGATT CTGGATTTGGTTTCGGCAAATACTGAGCAAGAGGAGGCTGCATTCAATTT CATGAAGGAAGTCAGTAAACATGCTTCCAATCACCATCCCGATAATATAC TGCTGACCTGCTTTCTTCGTATCCAAATCCGAGAAGACTGGCAACGTCAC TTGGGCATCCTGAAAAAGGAAACAAGAAATGCTATTAGCAAACACGGCGA TTTGGTGGCATGGAACAACAGCAAATTGTCTGTTTCGAAAGATATGAAAA TCGTTGATAGAGTGCGCTTTTTTAAGGGTGATGGACCTGCGTGTCAACTA GAAGCAGGCCATCAGAAAGATGGCAATTATTATTGCTGGTGTTGTGATAT GAAGGCCTCTCGTAGCGCTGACCTGGCCTATGTATTCGGGTGCACCAGAC ATTCACTCCAAGATAAAATAAACAGATTAACCAAAACTAGcTATGGAAAA CAATGTGTACATAATCAAAAAATGTCGATACTTGATGGAATTCCAAAGGT AGAGATCGtggaagaattgaaaaaacgtGGCGTCCAAGTCAACAAAGACC AAAATAAAGACGTGGTTTTGAAACAGCTTGAAGATATTTTCGCAGGAGTC CAACACCTTCCAGCATTACTGTTCGAATCGGGAAAGACAAGCCTTGAAAA GGTCGGTTTGGAATCGTACGAAGTACTTGCATGCGACCCTTTACACACCT TCAAAGGTTTGACGACCAATCTTTACCAAGAGATCCCTCGTCACCTTCAG ggcgaagaaaaaaatctttttaaggaCTCGGCGCGAGCATCCTTTCATGG CAAAGAGGCAAAAAATGGTGGAGACTACAGGCGAAGCCTGGTGGACCTGA CGATTTACTTGGATGGAGAAATGACTGATGCGTACGTCAAACTCATGAGG CAGCTCGCTGAATTACAAGAAATTGCATATTCCGGTGAAGAAAAGCGTAC AGCCAAGTCGATTTTACGCTTCCACAACGTGTCATTCTTGCACGCAGACT TGATGATTGAGCTTTTCGAAAAGCAGAAATCCATGAGCCGAAGAAAACTG TTTGGACAGTACAACCATTCGCTGACCAGTCATGCGCCAATCCAATATCG GATTCTGGATTTGGTTTCGGCAAATACTGAGCAAGAGGAGGCTGCATTCA ATTTCATGAAGGAAGTCAGTAAACATGCTTCCAATCACCATCCCGATAAT ATACTGCTGACCTGCTTTCTTCGTATCCAAATCCGAGAAGACTGGCAACG TCACTTGGGCATCCTGAAAAAGGAAACAAGAAATGCTATTAGCAAACACG GCGATTTGGTGGCATGGAACAACAGCAAATTGTCTGTTTCGAAAGATATG AAAATCGTTGATAGAGTGCGCTTTTTTAAGGGTGATGGACCTGCGTGTCA ACTAGAAGCAGGCCATCAGAAAGATGGCAATTATTATTGCTGGTGTTGTG ATATGAAGGCCTCTCGTAGCGCTGACCTGGCCTATGTATTCGGGTGCACC AGACATTCACTCCAAGATAAAATAAACAGATTAACCAAAACTAGcTATGG AAAACAATGTGTACATAATCAAAAAATGTCGATACTTGATGGAATTCCAA AGGTAGAGATCGtggaagaattgaaaaaacgtGGCGTCCAAGTCAACAAA GACCAAAATAAAGACGTGGTTTTGAAACAGCTTGAAGATATTTTCGCAGG AGTCCAACACCTTCCAGCATTACTGTTCGAATCGGGAAAGACAAGCCTTG AAAAGGTCGGTTTGGAATCGTACGAAGTACTTGCATGCGACCCTTTACAC ACCTTCAAAGGTTTGACGACCAATCTTTACCAAGAGATCCCTCGTCACCT TCAGggcgaagaaaaaaatctttttaaggaCTCGGCGCGAGCATCCTTTC ATGGCAAAGAGGCAAAAAATGGTGGAGACTACAGGCGAAGCCTGGTGGAC CTGACGATTTACTTGGATGGAGAAATGACTGATGCGTACGTCAAACTCAT GAGGCAGCTCGCTGAATTACAAGAAATTGCATATTCCGGTGAAGAAAAGC GTACAGCCAAGTCGATTTTACGCTTCCACAACGTGTCATTCTTGCACGCA GACTTGATGATTGAGCTTTTCGAAAAGCAGAAATCCATGAGCCGAAGAAA ACTGTTTGGACAGTACAACCATTCGCTGACCAGTCATGCGCCAATCCAAT ATCGGATTCTGGATTTGGTTTCGGCAAATACTGAGCAAGAGGAGGCTGCA TTCAATTTCATGAAGGAAGTCAGTAAACATGCTTCCAATCACCATCCCGA TAATATACTGCTGACCTGCTTTCTTCGTATCCAAATCCGAGAAGACTGGC AACGTCACTTGGGCATCCTGAAAAAGGAAACAAGAAATGCTATTAGCAAA CACGGCGATTTGGTGGCATGGAACAACAGCAAATTGTCTGTTTCGAAAGA TATGAAAATCGTTGATAGAGTGCGCTTTTTTAAGGGTGATGGACCTGCGT GTCAACTAGAAGCAGGCCATCAGAAAGATGGCAATTATTATTGCTGGTGT TGTGATATGAAGGCCTCTCGTAGCGCTGACCTGGCCTATGTATTCGGGTG CACCAGACATTCACTCCAAGATAAAATAAACAGATTAACCAAAACTAGcT ATGGAAAACAATGTGTACATAATCAAAAAATGTCGATACTTGATGGAATT CCAAAGGTAGAGATCGtggaagaattgaaaaaacgtGGCGTCCAAGTCAA CAAAGACCAAAATAAAGACGTGGTTTTGAAACAGCTTGAAGATATTTTCG CAGGAGTCCAACACCTTCCAGCATTACTGTTCGAATCGGGAAAGACAAGC CTTGAAAAGGTCGGTTTGGAATCGTACGAAGTACTTGCATGCGACCCTTT ACACACCTTCAAAGGTTTGACGACCAATCTTTACCAAGAGATCCCTCGTC ACCTTCAGggcgaagaaaaaaatctttttaaggaCTCGGCGCGAGCATCC TTTCATGGCAAAGAGGCAAAAAATGGTGGAGACTACAGGCGAAGCCTGGT GGACCTGACGATTTACTTGGATGGAGAAATGACTGATGCGTACGTCAAAC TCATGAGGCAGCTCGCTGAATTACAAGAAATTGCATATTCCGGTGAAGAA AAGCGTACAGCCAAGTCGATTTTACGCTTCCACAACGTGTCATTCTTGCA CGCAGACTTGATGATTGAGCTTTTCGAAAAGCAGAAATCCATGAGCCGAA GAAAACTGTTTGGACAGTACAACCATTCGCTGACCAGTCATGCGCCAATC CAATATCGGATTCTGGATTTGGTTTCGGCAAATACTGAGCAAGAGGAGGC TGCATTCAATTTCATGAAGGAAGTCAGTAAACATGCTTCCAATCACCATC CCGATAATATACTGCTGACCTGCTTTCTTCGTATCCAAATCCGAGAAGAC TGGCAACGTCACTTGGGCATCCTGAAAAAGGAAACAAGAAATGCTATTAG CAAACACGGCGATTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00063713-exon-scaffold_399-1491911889:75744..75816 | TCONS_00063713-exon-scaffold_399-1491911889:75744..75816 | Clytia hemisphaerica | exon |
TCONS_00063713-exon-scaffold_399-1510915933:75744..75816 | TCONS_00063713-exon-scaffold_399-1510915933:75744..75816 | Clytia hemisphaerica | exon |
TCONS_00063713-exon-scaffold_399-1575043694:75744..75816 | TCONS_00063713-exon-scaffold_399-1575043694:75744..75816 | Clytia hemisphaerica | exon |
TCONS_00063713-exon-scaffold_399-1491911889:76687..76849 | TCONS_00063713-exon-scaffold_399-1491911889:76687..76849 | Clytia hemisphaerica | exon |
TCONS_00063713-exon-scaffold_399-1510915933:76687..76849 | TCONS_00063713-exon-scaffold_399-1510915933:76687..76849 | Clytia hemisphaerica | exon |
TCONS_00063713-exon-scaffold_399-1575043694:76687..76849 | TCONS_00063713-exon-scaffold_399-1575043694:76687..76849 | Clytia hemisphaerica | exon |
TCONS_00063713-exon-scaffold_399-1491911889:78602..78756 | TCONS_00063713-exon-scaffold_399-1491911889:78602..78756 | Clytia hemisphaerica | exon |
TCONS_00063713-exon-scaffold_399-1510915933:78602..78756 | TCONS_00063713-exon-scaffold_399-1510915933:78602..78756 | Clytia hemisphaerica | exon |
TCONS_00063713-exon-scaffold_399-1575043694:78602..78756 | TCONS_00063713-exon-scaffold_399-1575043694:78602..78756 | Clytia hemisphaerica | exon |
TCONS_00063713-exon-scaffold_399-1491911889:78841..79555 | TCONS_00063713-exon-scaffold_399-1491911889:78841..79555 | Clytia hemisphaerica | exon |
TCONS_00063713-exon-scaffold_399-1510915933:78841..79555 | TCONS_00063713-exon-scaffold_399-1510915933:78841..79555 | Clytia hemisphaerica | exon |
TCONS_00063713-exon-scaffold_399-1575043694:78841..79555 | TCONS_00063713-exon-scaffold_399-1575043694:78841..79555 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_399 | supercontig | scaffold_399:75744..79555 + |
Blast
The following BLAST results are available for this feature:
|