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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00063711 ID=TCONS_00063711|Name=TCONS_00063711|organism=Clytia hemisphaerica|type=transcript|length=1554bp
tcactttcgttttcatatTTCACCATCAGATTGCACCAGGATTTTGAAAC
TACCAGCTGACCAGAGCATATTTAAAGAGAGGTAATTCAAAGAACATTTC
CTAGCtcaaacttcaatttttgaaagGTATTTAGATTCGGATTTATGCTT
GCAACATTAGGAGTAGTAGACACTCTTCAAGTTTTGCCACAAGAAAATCA
AATGAGttttaaagttcaaaaaaatcaaaggtGTAAACAAAAACATACCA
TTATGAAGGTGACAGGATTTTCAACACAGCCATACAGAAATCAGAACGCT
GgatcaaaagaaaataatttatcattGCAGAATGTCTCATCGGATGAaga
agaagtttgtttttgcttcCACGAGGATGATGTCCTTGATGAATCTTTTT
TCAGTGATTTGATGtacaaaagcaagaaaaaacaattaagGTCATCGCGA
CCAAAGCGCAAGGTCAGATCAACCGTGAAACAGACATTTAGAAACAAGCA
GGACTTTTCCAAAGGGAATGTTAACAACAATAAAGGTGTTGATGATGAAG
TCGAATTAACACAAGTCCTTAGAAAACTCCCTCCAAAGATCAATCTTAAt
ttgaatcaaatcaaaaaggaaatttcaaaatctcaaACAATGGAGGACAA
CCATCTTCTACACAAgagaaatattgataaaaagctaaagaaaaacaata
ttttgagaTGCTCCCAGCTCCCTAAAAGTTATTCATTACCAAACCAAAGC
CGTATTTCTCAGCAAAAACTCGAATACAAGTCTGTTGAAGAGAAAATGCT
AGAACTTCAATACCGTGATATTAGTTATTCAGATTATGAACTTCTCTTGA
CACTGGACGATACAGTTAAACCGCCAACTGCAAACAAGTCAACCTTCAAT
AAACTATCACAAGAAATGAAGAGAAACAATGACATTGAATTATGTGTAAT
TTGCATGGGTGATATTTTGTTTCAGGAAATTGTTATTACTTTACCGGAAT
GTGGACACCGTTTTCATAAAGCTTGCATAGAAAATTGGTTACTGAATTGT
TCAAAACAATGCCCTGTGGATATGACATATATCTgttagttttttaattt
ttctcagcACCCATTCATGCTATATTAGAAAGTTATACACCTTAGGAAAA
ACAATCTACCAAATCTCTGAAcaactgaattttgaaatagcttGATGTCA
TGAATTTTAGAACAGtacaaaaaatcttcatttttttcatcttcattttt
ctttttcatttttcaatttttcaaaagtgttttaTCCTTTAGATTATTCT
CATTGGAAATATCattccaacggtgtataactttcTAACATAGCATGAAT
GGGTGCTGAGAAAAGATCACATACCATATTCAAAAACTGTTAGTATATAT
TGATGTAAATTTAAAATTGGTCGCTTCCTTACACTAATCAATAATCTAAA
TTATATTTGGTTatattgatctattataatttgGGTCCTTACACTTGCTC
AAAATCATAGGTAATACAAATAATAGGAGCACTTACTTTTTGTTCAAGAA
GAGA Run BLAST on NCBI protein sequence of TCONS_00063711-protein >TCONS_00063711-protein ID=TCONS_00063711-protein|Name=TCONS_00063711-protein|organism=Clytia hemisphaerica|type=polypeptide|length=314bp
MLATLGVVDTLQVLPQENQMSFKVQKNQRCKQKHTIMKVTGFSTQPYRNQ
NAGSKENNLSLQNVSSDEEEVCFCFHEDDVLDESFFSDLMYKSKKKQLRS
SRPKRKVRSTVKQTFRNKQDFSKGNVNNNKGVDDEVELTQVLRKLPPKIN
LNLNQIKKEISKSQTMEDNHLLHKRNIDKKLKKNNILRCSQLPKSYSLPN
QSRISQQKLEYKSVEEKMLELQYRDISYSDYELLLTLDDTVKPPTANKST
FNKLSQEMKRNNDIELCVICMGDILFQEIVITLPECGHRFHKACIENWLL
NCSKQCPVDMTYIC Run BLAST on NCBI transcript from alignment at scaffold_399:23663..27100+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00063711 ID=TCONS_00063711|Name=TCONS_00063711|organism=Clytia hemisphaerica|type=transcript|length=3438bp|location=Sequence derived from alignment at scaffold_399:23663..27100+ (Clytia hemisphaerica)
tcactttcgttttcatatTTCACCATCAGATTGCACCAGGATTTTGAAAC
TACCAGCTGACCAGAGCATATTTAAAGAGAGGTAATTCAAAGAACATTTC
CTAGCtcaaacttcaatttttgaaagGTATTTAGATTCGGATTTATGCTT
GCAACATTAGGAGTAGTAGACACTCTTCAAGTTTTGCCACAAGAAAATCA
AATGAGttttaaagttcaaaaaaatcaaaggtGTAAACAAAAACATACCA
TTATGAAGGTAAGATACAAATCTGTCTACAGTAGAGGGTTTATATAAATA
TGATTATACCTTGATTATGAGCATGTTATTATCTTGGGAAGATCAACCCG
CTTTCAGTTAGTCTaagaaatcaagctttcagtaaaaacaaatcagcaaa
aatgattccgcacatgtaaatgggtcattgtttgaggtctggTAAAATTC
ACGAGAAATAACCTATCCTGCAGTCCTGCGGTGCACTGATCTAGGTGGGT
GGCTTTTTctcgtagatctttttcttgagaagttgTTCTTTAAATTAGTT
TTTTAGGGTTAATACCTTTCATCaagttttttaaatgtttatttcattaa
aaagcgccagtttaatttttcattcagtcATTAAGTTTTGTGGCGCATTC
TTTGGCTTGTGATGCGAGTCAAGTAAAAGATATGCCATATGCGTTCCGGT
GGAACGCTAGTGTGACTgactgatttttaaatttgggGGGCTGTAGCTTT
ATTTGAGAAAGaatctgaaaaatctgaaaacataTTTAAAATCCATGAAA
GTTCAAAGTTTTTTAAGActgtaagaaaaatttaaattcatgaTTTCTTG
TTTTGTGAAAACGTCCCGGTTTAGAAAaccaacttttcttttttagaata
taccttacaatctagttttcatatttatagaaactagattgctgacgtgt
gaaaaagaatttcggcatgactgattcttttgtttcgataataacatcaa
aacttaattttcttctcgtttctttctttcttatcagttcacCCTTTCTC
TCATTACTttcaaagcgtggttagctcaagcggttagatcgtctgtctca
tatgcatgcggctccgagttcgattccaatgggtgtccaattttttcaat
tcttgattttgtttttgtgattctctcatcactttaattttgtatcacat
tttcattagagtgaagagatatcgacgcgttgtaatgttaattgctatta
gtaattacgcgttcaattcgaatctatgatctgttccctcctagtgagga
gtttaaaacccttataacaaccgtattttataagcattgaataatgaaat
tcaaataaccaccacgcaagaaagataagcaaacgattggatcaagtgtc
aaacattttgacctggaaatcaattattattctgCCTTTAAAGTGTAAAA
CGAGAAGTTCAATGATTCTGAAAGAAGTTATTTGACGATTCTCTTACAAA
GAATCActcgctcactcgctggctgaaagtgaaagtgaaagtagtgaaag
tgaaactgaaactgtcagtcagcaaacgcaggcgcaaacgcctatacccg
ttcttctatatctcagccttgaataattgcttgtggcaaaaaaaagattg
aagaaaaaaaaacttaaaaaagttcttattaaagtgatgctatcatagct
tatctaaaccttagagagagagcggaggtaatatatgctagctacttgtt
tgattgaccttcattataaaagaaggagaattaaaaaaagaaaattgacg
aattgaaaaattggacatCCATTGGAATCGAATCgatattctaaaaaaga
aaagttggtTTTCTAAACAGGGACGtttgaagtaaaaaaagttttcaatt
ttttgctctTCATTATATTTACGTATAAATATTGGTCTAATGTTAAATGT
CAACAAGattttatctttccaacaaggtATTCATATTTTCCGTCAAGAAG
AgcaatttatcaaaatatggcaACTGGTAATTTTTTGGGAACATACTTTG
GGAACTTTTCAGGAGACTTCTATTTTCCTGCTGATTTTCTTGATCTGGTG
ATAATTCGTGTTActcaaacttgatttttttatttctattagGTGACAGG
ATTTTCAACACAGCCATACAGAAATCAGAACGCTGgatcaaaagaaaata
atttatcattGCAGAATGTCTCATCGGATGAagaagaagtttgtttttgc
ttcCACGAGGATGATGTCCTTGATGAATCTTTTTTCAGTGATTTGATGta
caaaagcaagaaaaaacaattaagGTCATCGCGACCAAAGCGCAAGGTCA
GATCAACCGTGAAACAGACATTTAGAAACAAGCAGGACTTTTCCAAAGGG
AATGTTAACAACAATAAAGGTGTTGATGATGAAGTCGAATTAACACAAGT
CCTTAGAAAACTCCCTCCAAAGATCAATCTTAAtttgaatcaaatcaaaa
aggaaatttcaaaatctcaaACAATGGAGGACAACCATCTTCTACACAAg
agaaatattgataaaaagctaaagaaaaacaatattttgagaTGCTCCCA
GCTCCCTAAAAGTTATTCATTACCAAACCAAAGCCGTATTTCTCAGCAAA
AACTCGAATACAAGTCTGTTGAAGAGAAAATGCTAGAACTTCAATACCGT
GATATTAGTTATTCAGATTATGAACTTCTCTTGACACTGGACGATACAGT
TAAACCGCCAACTGCAAACAAGTCAACCTTCAATAAACTATCACAAGAAA
TGAAGAGAAACAATGACATTGAATTATGTGTAATTTGCATGGGTGATATT
TTGTTTCAGGAAATTGTTATTACTTTACCGGAATGTGGACACCGTTTTCA
TAAAGCTTGCATAGAAAATTGGTTACTGAATTGTTCAAAACAATGCCCTG
TGGATATGACATATATCTgttagttttttaatttttctcagcACCCATTC
ATGCTATATTAGAAAGTTATACACCTTAGGAAAAACAATCTACCAAATCT
CTGAAcaactgaattttgaaatagcttGATGTCATGAATTTTAGAACAGt
acaaaaaatcttcatttttttcatcttcatttttctttttcatttttcaa
tttttcaaaagtgttttaTCCTTTAGATTATTCTCATTGGAAATATCatt
ccaacggtgtataactttcTAACATAGCATGAATGGGTGCTGAGAAAAGA
TCACATACCATATTCAAAAACTGTTAGTATATATTGATGTAAATTTAAAA
TTGGTCGCTTCCTTACACTAATCAATAATCTAAATTATATTTGGTTatat
tgatctattataatttgGGTCCTTACACTTGCTCAAAATCATAGGTAATA
CAAATAATAGGAGCACTTACTTTTTGTTCAAGAAGAGA Coding sequence (CDS) from alignment at scaffold_399:23663..27100+ >TCONS_00063711 ID=TCONS_00063711|Name=TCONS_00063711|organism=Clytia hemisphaerica|type=CDS|length=1890bp|location=Sequence derived from alignment at scaffold_399:23663..27100+ (Clytia hemisphaerica)
ATGCTTGCAACATTAGGAGTAGTAGACACTCTTCAAGTTTTGCCACAAGA
AAATCAAATGAGttttaaagttcaaaaaaatcaaaggtGTAAACAAAAAC
ATACCATTATGAAGGTGACAGGATTTTCAACACAGCCATACAGAAATCAG
AACGCTGgatcaaaagaaaataatttatcattGCAGAATGTCTCATCGGA
TGAagaagaagtttgtttttgcttcCACGAGGATGATGTCCTTGATGAAT
CTTTTTTCAGTGATTTGATGtacaaaagcaagaaaaaacaattaagGTCA
TCGCGACCAAAGCGCAAGGTCAGATCAACCGTGAAACAGACATTTAGAAA
CAAGCAGGACTTTTCCAAAGGGAATGTTAACAACAATAAAGGTGTTGATG
ATGAAGTCGAATTAACACAAGTCCTTAGAAAACTCCCTCCAAAGATCAAT
CTTAAtttgaatcaaatcaaaaaggaaatttcaaaatctcaaACAATGGA
GGACAACCATCTTCTACACAAgagaaatattgataaaaagctaaagaaaa
acaatattttgagaTGCTCCCAGCTCCCTAAAAGTTATTCATTACCAAAC
CAAAGCCGTATTTCTCAGCAAAAACTCGAATACAAGTCTGTTGAAGAGAA
AATGCTAGAACTTCAATACCGTGATATTAGTTATTCAGATTATGAACTTC
TCTTGACACTGGACGATACAGTTAAACCGCCAACTGCAAACAAGTCAACC
TTCAATAAACTATCACAAGAAATGAAGAGAAACAATGACATTGAATTATG
TGTAATTTGCATGGGTGATATTTTGTTTCAGGAAATTGTTATTACTTTAC
CGGAATGTGGACACCGTTTTCATAAAGCTTGCATAGAAAATTGGTTACTG
AATTGTTCAAAACAATGCCCTGTGGATATGACATATATCTgttagATGCT
TGCAACATTAGGAGTAGTAGACACTCTTCAAGTTTTGCCACAAGAAAATC
AAATGAGttttaaagttcaaaaaaatcaaaggtGTAAACAAAAACATACC
ATTATGAAGGTGACAGGATTTTCAACACAGCCATACAGAAATCAGAACGC
TGgatcaaaagaaaataatttatcattGCAGAATGTCTCATCGGATGAag
aagaagtttgtttttgcttcCACGAGGATGATGTCCTTGATGAATCTTTT
TTCAGTGATTTGATGtacaaaagcaagaaaaaacaattaagGTCATCGCG
ACCAAAGCGCAAGGTCAGATCAACCGTGAAACAGACATTTAGAAACAAGC
AGGACTTTTCCAAAGGGAATGTTAACAACAATAAAGGTGTTGATGATGAA
GTCGAATTAACACAAGTCCTTAGAAAACTCCCTCCAAAGATCAATCTTAA
tttgaatcaaatcaaaaaggaaatttcaaaatctcaaACAATGGAGGACA
ACCATCTTCTACACAAgagaaatattgataaaaagctaaagaaaaacaat
attttgagaTGCTCCCAGCTCCCTAAAAGTTATTCATTACCAAACCAAAG
CCGTATTTCTCAGCAAAAACTCGAATACAAGTCTGTTGAAGAGAAAATGC
TAGAACTTCAATACCGTGATATTAGTTATTCAGATTATGAACTTCTCTTG
ACACTGGACGATACAGTTAAACCGCCAACTGCAAACAAGTCAACCTTCAA
TAAACTATCACAAGAAATGAAGAGAAACAATGACATTGAATTATGTGTAA
TTTGCATGGGTGATATTTTGTTTCAGGAAATTGTTATTACTTTACCGGAA
TGTGGACACCGTTTTCATAAAGCTTGCATAGAAAATTGGTTACTGAATTG
TTCAAAACAATGCCCTGTGGATATGACATATATCTgttag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00063711-exon-scaffold_399-1491911889:23663..23920 | TCONS_00063711-exon-scaffold_399-1491911889:23663..23920 | Clytia hemisphaerica | exon |
| TCONS_00063711-exon-scaffold_399-1510915933:23663..23920 | TCONS_00063711-exon-scaffold_399-1510915933:23663..23920 | Clytia hemisphaerica | exon |
| TCONS_00063711-exon-scaffold_399-1575043694:23663..23920 | TCONS_00063711-exon-scaffold_399-1575043694:23663..23920 | Clytia hemisphaerica | exon |
| TCONS_00063711-exon-scaffold_399-1491911889:25805..27100 | TCONS_00063711-exon-scaffold_399-1491911889:25805..27100 | Clytia hemisphaerica | exon |
| TCONS_00063711-exon-scaffold_399-1510915933:25805..27100 | TCONS_00063711-exon-scaffold_399-1510915933:25805..27100 | Clytia hemisphaerica | exon |
| TCONS_00063711-exon-scaffold_399-1575043694:25805..27100 | TCONS_00063711-exon-scaffold_399-1575043694:25805..27100 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_399 | supercontig | scaffold_399:23663..27100 + |
Annotated Terms
The following terms have been associated with this transcript:
Blast
The following BLAST results are available for this feature:
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