XLOC_039936 (gene) - C. hemisphaerica

Overview
NameXLOC_039936
Unique NameXLOC_039936
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at scaffold_399:23559..27100+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_039936 ID=XLOC_039936|Name=XLOC_039936|organism=Clytia hemisphaerica|type=gene|length=3542bp|location=Sequence derived from alignment at scaffold_399:23559..27100+ (Clytia hemisphaerica)
ccgGGCCTCTCATTTTTgcatcactatgcaaaaaaatcataactgGAACA
AACGGCCCGACAAACCATTACGTCATGTGTaaacaacaaaaatggtagcc
attttcactttcgttttcatatTTCACCATCAGATTGCACCAGGATTTTG
AAACTACCAGCTGACCAGAGCATATTTAAAGAGAGGTAATTCAAAGAACA
TTTCCTAGCtcaaacttcaatttttgaaagGTATTTAGATTCGGATTTAT
GCTTGCAACATTAGGAGTAGTAGACACTCTTCAAGTTTTGCCACAAGAAA
ATCAAATGAGttttaaagttcaaaaaaatcaaaggtGTAAACAAAAACAT
ACCATTATGAAGGTAAGATACAAATCTGTCTACAGTAGAGGGTTTATATA
AATATGATTATACCTTGATTATGAGCATGTTATTATCTTGGGAAGATCAA
CCCGCTTTCAGTTAGTCTaagaaatcaagctttcagtaaaaacaaatcag
caaaaatgattccgcacatgtaaatgggtcattgtttgaggtctggTAAA
ATTCACGAGAAATAACCTATCCTGCAGTCCTGCGGTGCACTGATCTAGGT
GGGTGGCTTTTTctcgtagatctttttcttgagaagttgTTCTTTAAATT
AGTTTTTTAGGGTTAATACCTTTCATCaagttttttaaatgtttatttca
ttaaaaagcgccagtttaatttttcattcagtcATTAAGTTTTGTGGCGC
ATTCTTTGGCTTGTGATGCGAGTCAAGTAAAAGATATGCCATATGCGTTC
CGGTGGAACGCTAGTGTGACTgactgatttttaaatttgggGGGCTGTAG
CTTTATTTGAGAAAGaatctgaaaaatctgaaaacataTTTAAAATCCAT
GAAAGTTCAAAGTTTTTTAAGActgtaagaaaaatttaaattcatgaTTT
CTTGTTTTGTGAAAACGTCCCGGTTTAGAAAaccaacttttcttttttag
aatataccttacaatctagttttcatatttatagaaactagattgctgac
gtgtgaaaaagaatttcggcatgactgattcttttgtttcgataataaca
tcaaaacttaattttcttctcgtttctttctttcttatcagttcacCCTT
TCTCTCATTACTttcaaagcgtggttagctcaagcggttagatcgtctgt
ctcatatgcatgcggctccgagttcgattccaatgggtgtccaatttttt
caattcttgattttgtttttgtgattctctcatcactttaattttgtatc
acattttcattagagtgaagagatatcgacgcgttgtaatgttaattgct
attagtaattacgcgttcaattcgaatctatgatctgttccctcctagtg
aggagtttaaaacccttataacaaccgtattttataagcattgaataatg
aaattcaaataaccaccacgcaagaaagataagcaaacgattggatcaag
tgtcaaacattttgacctggaaatcaattattattctgCCTTTAAAGTGT
AAAACGAGAAGTTCAATGATTCTGAAAGAAGTTATTTGACGATTCTCTTA
CAAAGAATCActcgctcactcgctggctgaaagtgaaagtgaaagtagtg
aaagtgaaactgaaactgtcagtcagcaaacgcaggcgcaaacgcctata
cccgttcttctatatctcagccttgaataattgcttgtggcaaaaaaaag
attgaagaaaaaaaaacttaaaaaagttcttattaaagtgatgctatcat
agcttatctaaaccttagagagagagcggaggtaatatatgctagctact
tgtttgattgaccttcattataaaagaaggagaattaaaaaaagaaaatt
gacgaattgaaaaattggacatCCATTGGAATCGAATCgatattctaaaa
aagaaaagttggtTTTCTAAACAGGGACGtttgaagtaaaaaaagttttc
aattttttgctctTCATTATATTTACGTATAAATATTGGTCTAATGTTAA
ATGTCAACAAGattttatctttccaacaaggtATTCATATTTTCCGTCAA
GAAGAgcaatttatcaaaatatggcaACTGGTAATTTTTTGGGAACATAC
TTTGGGAACTTTTCAGGAGACTTCTATTTTCCTGCTGATTTTCTTGATCT
GGTGATAATTCGTGTTActcaaacttgatttttttatttctattagGTGA
CAGGATTTTCAACACAGCCATACAGAAATCAGAACGCTGgatcaaaagaa
aataatttatcattGCAGAATGTCTCATCGGATGAagaagaagtttgttt
ttgcttcCACGAGGATGATGTCCTTGATGAATCTTTTTTCAGTGATTTGA
TGtacaaaagcaagaaaaaacaattaagGTCATCGCGACCAAAGCGCAAG
GTCAGATCAACCGTGAAACAGACATTTAGAAACAAGCAGGACTTTTCCAA
AGGGAATGTTAACAACAATAAAGGTGTTGATGATGAAGTCGAATTAACAC
AAGTCCTTAGAAAACTCCCTCCAAAGATCAATCTTAAtttgaatcaaatc
aaaaaggaaatttcaaaatctcaaACAATGGAGGACAACCATCTTCTACA
CAAgagaaatattgataaaaagctaaagaaaaacaatattttgagaTGCT
CCCAGCTCCCTAAAAGTTATTCATTACCAAACCAAAGCCGTATTTCTCAG
CAAAAACTCGAATACAAGTCTGTTGAAGAGAAAATGCTAGAACTTCAATA
CCGTGATATTAGTTATTCAGATTATGAACTTCTCTTGACACTGGACGATA
CAGTTAAACCGCCAACTGCAAACAAGTCAACCTTCAATAAACTATCACAA
GAAATGAAGAGAAACAATGACATTGAATTATGTGTAATTTGCATGGGTGA
TATTTTGTTTCAGGAAATTGTTATTACTTTACCGGAATGTGGACACCGTT
TTCATAAAGCTTGCATAGAAAATTGGTTACTGAATTGTTCAAAACAATGC
CCTGTGGATATGACATATATCTgttagttttttaatttttctcagcACCC
ATTCATGCTATATTAGAAAGTTATACACCTTAGGAAAAACAATCTACCAA
ATCTCTGAAcaactgaattttgaaatagcttGATGTCATGAATTTTAGAA
CAGtacaaaaaatcttcatttttttcatcttcatttttctttttcatttt
tcaatttttcaaaagtgttttaTCCTTTAGATTATTCTCATTGGAAATAT
CattccaacggtgtataactttcTAACATAGCATGAATGGGTGCTGAGAA
AAGATCACATACCATATTCAAAAACTGTTAGTATATATTGATGTAAATTT
AAAATTGGTCGCTTCCTTACACTAATCAATAATCTAAATTATATTTGGTT
atattgatctattataatttgGGTCCTTACACTTGCTCAAAATCATAGGT
AATACAAATAATAGGAGCACTTACTTTTTGTTCAAGAAGAGA
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00063710TCONS_00063710Clytia hemisphaericatranscript
TCONS_00063711TCONS_00063711Clytia hemisphaericatranscript
TCONS_00063712TCONS_00063712Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00063711-proteinTCONS_00063711-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_399supercontigscaffold_399:23559..27100 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.1	0.06	0.19	0.07	1.26	1.01	1.17	2.98	1.51	5.16	1.43	1.83	1.58	2.19	0.21	0.51	0.14	0.38	0.78	0.4	0.26	0.32	0.04	0.34	1.3	2.85	0.49	0.4	0.48	0.2