|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00063680 ID=TCONS_00063680|Name=TCONS_00063680|organism=Clytia hemisphaerica|type=transcript|length=1879bpRun BLAST on NCBI protein sequence of TCONS_00063680-protein >TCONS_00063680-protein ID=TCONS_00063680-protein|Name=TCONS_00063680-protein|organism=Clytia hemisphaerica|type=polypeptide|length=363bp RTACARIKKPITCKIRVYESIEKTVEYAKRLERAGAKIITVHGRRREQRGRun BLAST on NCBI transcript from alignment at scaffold_398:129749..225528+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00063680 ID=TCONS_00063680|Name=TCONS_00063680|organism=Clytia hemisphaerica|type=transcript|length=95780bp|location=Sequence derived from alignment at scaffold_398:129749..225528+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_398:129749..225528+ >TCONS_00063680 ID=TCONS_00063680|Name=TCONS_00063680|organism=Clytia hemisphaerica|type=CDS|length=9828bp|location=Sequence derived from alignment at scaffold_398:129749..225528+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00063680 vs. Swiss-Prot (Human)
Match: DUS1L (tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like OS=Homo sapiens GN=DUS1L PE=1 SV=1) HSP 1 Score: 249.595 bits (636), Expect = 1.706e-74 Identity = 131/302 (43.38%), Postives = 185/302 (61.26%), Query Frame = 3
Query: 18 RIKKPITCKIRVYESIEKTVEYAKRLERAGAKIITVHGRRREQRGPLTGIASWDHIKAVKEAVSVPVFANGNIQYLRDVEKCIEYTKVDAVMSAEGALYNPAIFTGRQPPAWEMVDKYLAYCNQYPTNLSYVRGHLFRMWQKCLDNFPEMRHPLGKVKKFEDMCKISDTXXXXXXXXXXXXXXXGKDSEEIGQLPF-WRCQPYVRPPPKTTSGEKRXXXXXXXXXXXXXXXXXXSKRKAIREKHHQHGKGAFPKVPKDKWPLCVTCKNNPWGKKCEHNLCKACCKDMTAIKVLDCSGHKFKF 920
++ P+TCKIRV+ I+KTV YA+ LE+AG +++TVHGR +EQ+GPL+G ASW+HIKAV++AV++PVFANGNIQ L+DVE+C+ T V VMSAEG L+NPA+F GR P WE+ ++YL ++P LSYVR HLF++W L E+R L KVK E + +S +K + + ++ + ++ G LPF W CQPY+RP P+ S EK E + + SK K ++ + H F K K+ C C NP G +C +LC+ CCK + + DC GH F
Sbjct: 139 KLSVPVTCKIRVFPEIDKTVRYAQMLEKAGCQLLTVHGRTKEQKGPLSGAASWEHIKAVRKAVAIPVFANGNIQCLQDVERCLRDTGVQGVMSAEGNLHNPALFEGRSPAVWELAEEYLDIVREHPCPLSYVRAHLFKLWHHTLQVHQELREELAKVKTLEGIAAVSQELKLRCQEEISRQ----EGAKPTGDLPFHWICQPYIRPGPREGSKEKAGARSKRALEEEEGGTEVLSKNKQKKQLRNPH--KTFDPSLKPKYAKCDQC-GNPKGNRCVFSLCRGCCKKRASKETADCPGHGLLF 433 The following BLAST results are available for this feature:
BLAST of TCONS_00063680 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.