TCONS_00063666 (transcript) - C. hemisphaerica

Overview
NameTCONS_00063666
Unique NameTCONS_00063666
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length838

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00063666 ID=TCONS_00063666|Name=TCONS_00063666|organism=Clytia hemisphaerica|type=transcript|length=838bp
atccgGGCCTTGACCAAAATTtactgtttcttataaaacttGTATCGGGT
TAGAGATTATCTCCAATCCATTTCGAgaatgtattttcaaaaatatgtgt
tATTTTAGCGGGTGAAAAATGACGTTATCAAGCCCAAAAAGTGATTTAAA
GTCATACATTGtcaaaagccttcaaatgtttcTTCACGAAATCAATAGAG
ATATTCTTCTTGATACAAAAGGAAACAGCGTAAAGATGATCGGTATTTCT
TTGACCTTCATCCGCCAGGAAAGCGTTGTTTCCTTCTCGATTACCACGAC
TGACAGTAACTTCACGCACTGCATGTCCAAACATTTTATAATCACccctg
aaaacaaaaaaacaagaaaaaagtaTGACTCTAAAATGTTTCTTCATAAT
GGTACTGACGTCTGGAATAATCTACCTAACAATCTCCGTCAAACCCAATC
TATCGTTactttcaagtcaaaagctaAATGTCATTTCTTTCAATAATCAA
TTTTTATCTTTCTGTTTTTCGTTCTCGTTTCTAATTTTGTTAAGTTACTA
TTCTGTTCTGTTTTTATCATTGGGAAAATGTTACACGGGTTCTTGATTTT
TCTGACACTACAGCACGGACcaaatagctgattggttgtaagtgacgtaa
aatcagtcaatacgtcactttcaaccaatcagctgttgggtccgtggaag
aaaTTGCAATgttgaatatcatgaatttcagattttttaagcATGATTTT
GGAGCGATCGTTTTGCTTGACCCAATcacgaggctcaaaatcttatttaa
ttttcatcctaaatctggatgaaaaaagaTCAAAGCAG
Run BLAST on NCBI

protein sequence of TCONS_00063666-protein

>TCONS_00063666-protein ID=TCONS_00063666-protein|Name=TCONS_00063666-protein|organism=Clytia hemisphaerica|type=polypeptide|length=125bp
MTLSSPKSDLKSYIVKSLQMFLHEINRDILLDTKGNSVKMIGISLTFIRQ
ESVVSFSITTTDSNFTHCMSKHFIITPENKKTRKKYDSKMFLHNGTDVWN
NLPNNLRQTQSIVTFKSKAKCHFFQ
Run BLAST on NCBI

transcript from alignment at scaffold_397:150195..151032

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00063666 ID=TCONS_00063666|Name=TCONS_00063666|organism=Clytia hemisphaerica|type=transcript|length=838bp|location=Sequence derived from alignment at scaffold_397:150195..151032 (Clytia hemisphaerica)
CTGCTTTGAtcttttttcatccagatttaggatgaaaattaaataagatt
ttgagcctcgtgATTGGGTCAAGCAAAACGATCGCTCCAAAATCATgctt
aaaaaatctgaaattcatgatattcaacATTGCAAtttcttccacggacc
caacagctgattggttgaaagtgacgtattgactgattttacgtcactta
caaccaatcagctatttgGTCCGTGCTGTAGTGTCAGAAAAATCAAGAAC
CCGTGTAACATTTTCCCAATGATAAAAACAGAACAGAATAGTAACTTAAC
AAAATTAGAAACGAGAACGAAAAACAGAAAGATAAAAATTGATTATTGAA
AGAAATGACATTtagcttttgacttgaaagtAACGATAGATTGGGTTTGA
CGGAGATTGTTAGGTAGATTATTCCAGACGTCAGTACCATTATGAAGAAA
CATTTTAGAGTCAtacttttttcttgtttttttgttttcagggGTGATTA
TAAAATGTTTGGACATGCAGTGCGTGAAGTTACTGTCAGTCGTGGTAATC
GAGAAGGAAACAACGCTTTCCTGGCGGATGAAGGTCAAAGAAATACCGAT
CATCTTTACGCTGTTTCCTTTTGTATCAAGAAGAATATCTCTATTGATTT
CGTGAAgaaacatttgaaggcttttgaCAATGTATGACTTTAAATCACTT
TTTGGGCTTGATAACGTCATTTTTCACCCGCTAAAATaacacatattttt
gaaaatacattcTCGAAATGGATTGGAGATAATCTCTAACCCGATACaag
ttttataagaaacagtaAATTTTGGTCAAGGCCcggat

Coding sequence (CDS) from alignment at scaffold_397:150195..151032

>TCONS_00063666 ID=TCONS_00063666|Name=TCONS_00063666|organism=Clytia hemisphaerica|type=CDS|length=378bp|location=Sequence derived from alignment at scaffold_397:150195..151032 (Clytia hemisphaerica)
TTATTGAAAGAAATGACATTtagcttttgacttgaaagtAACGATAGATT
GGGTTTGACGGAGATTGTTAGGTAGATTATTCCAGACGTCAGTACCATTA
TGAAGAAACATTTTAGAGTCAtacttttttcttgtttttttgttttcagg
gGTGATTATAAAATGTTTGGACATGCAGTGCGTGAAGTTACTGTCAGTCG
TGGTAATCGAGAAGGAAACAACGCTTTCCTGGCGGATGAAGGTCAAAGAA
ATACCGATCATCTTTACGCTGTTTCCTTTTGTATCAAGAAGAATATCTCT
ATTGATTTCGTGAAgaaacatttgaaggcttttgaCAATGTATGACTTTA
AATCACTTTTTGGGCTTGATAACGTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039908XLOC_039908Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063666-proteinTCONS_00063666-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063666-exon-scaffold_397-1491911889:150195..151032TCONS_00063666-exon-scaffold_397-1491911889:150195..151032Clytia hemisphaericaexon
TCONS_00063666-exon-scaffold_397-1510915933:150195..151032TCONS_00063666-exon-scaffold_397-1510915933:150195..151032Clytia hemisphaericaexon
TCONS_00063666-exon-scaffold_397-1575043694:150195..151032TCONS_00063666-exon-scaffold_397-1575043694:150195..151032Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_397supercontigscaffold_397:150195..151032 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.118234	0	0.171873	0.281228	5.1814	3.81035	5.04686	7.48445	3.33927	4.08177	3.2656	3.83444	2.48393	2.91902	0.1404	0.325701	0.318532	0.144614	0.325296	0.0667718	0.388064	0.256875	0.136725	0.192588	1.19263	2.88736	0.0882284	0.0923318	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00063666 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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