TCONS_00063659 (transcript) - C. hemisphaerica

Overview
NameTCONS_00063659
Unique NameTCONS_00063659
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length551

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00063659 ID=TCONS_00063659|Name=TCONS_00063659|organism=Clytia hemisphaerica|type=transcript|length=551bp
AAGGAAACACTGGTGGTCCATTCATTTGCAGATGCGAAAAATCATTCATA
GTCAAAGGCGTGTTTGATATGCATGTGGGAAAATGTCTCATTAACAAACG
TGAAGTGTCGCCATCTTACGAACTTCGTCCTCGTAAAGTTCTTATCCCAA
ATGACGAAGCTGACTCCCAGAATGAATCAGACGTTGAAACGGCAATAAAT
GACAGTGGTATCGACAGAACTGTGAACGAGAGTCAAGAAGAAGGTAGTGA
TTCCGATGACTCTTCATTGGATGATGACGTTCGTGATCCAGATTTCAACC
CTGACCAATCTGCTTCTGAGGACGATAGTAACGACCCCCTTGACGAATTC
aacgaaaaagaaattgaaaatgcaGTCATTAAAGTTTTAAATACGTCTTC
AATTTCAAACGGCACTGAAGAAATAGCTGTCAGGCAAACGAATAACGAAA
TAGATGACGAAAATCATACAACGAACTATGGAGATGAAAGAGAAAATGAC
AATGGAATCGACAATGATATTGGCGATCACGAGATTGATAATGGAATGGG
T
Run BLAST on NCBI

protein sequence of TCONS_00063659-protein

>TCONS_00063659-protein ID=TCONS_00063659-protein|Name=TCONS_00063659-protein|organism=Clytia hemisphaerica|type=polypeptide|length=183bp
GNTGGPFICRCEKSFIVKGVFDMHVGKCLINKREVSPSYELRPRKVLIPN
DEADSQNESDVETAINDSGIDRTVNESQEEGSDSDDSSLDDDVRDPDFNP
DQSASEDDSNDPLDEFNEKEIENAVIKVLNTSSISNGTEEIAVRQTNNEI
DDENHTTNYGDERENDNGIDNDIGDHEIDNGMG
Run BLAST on NCBI

transcript from alignment at scaffold_397:192445..194420-

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00063659 ID=TCONS_00063659|Name=TCONS_00063659|organism=Clytia hemisphaerica|type=transcript|length=1976bp|location=Sequence derived from alignment at scaffold_397:192445..194420- (Clytia hemisphaerica)
AAGGAAACGTAAGAATTTATACACTTCGTAACTAAAAAGTTGTGGCAATC
CTTGAACTTATATCTCAGTGGAAAAGGGATTTAAATCAATGAGGCTCATA
GTAAGGAGTAGATCTTTCATGTGGTAATAATTTTATTATCTAGACTGGTG
GTCCATTCATTTGCAGATGCGAAAAATCATTCATAGTCAAAGGCGTGTTT
GATATGCATGTGGGAAAATGTCTCATTAACAAAGTATGACCTTTTTCTTT
TATTTTCTAAAAGTTAAAGAATCCTTGTCAATTGTATTTTATTGCGATTA
CTTTTTAAAACTACATTCCATGTTAAAGAAAAATTCTTTTTTCCTCGGTT
TTTTATTAACAAGATCCACTATGCACTCCCAAACGGATGTTTTCGAATTT
AATAGCATACGTCATCAATCTGTTCAGTTGATTTTTAATTTGTTTTTAAT
TATTTATTGTCTTGTGCAGCGTGAAGTGTCGCCATCTTACGAACTTCGTC
CTCGTAAAGTTCTTATCCCAAATGACGAAGCTGACTCCCAGGTATTACTT
ACGTCTTTATATACAGGAGCAATAATCAGTGCAACCAGGCAACACATTGG
AGAATAGAAAAACCTGAAGCCCCCCTTTTTTAAATAGTGTTTTTGACCTA
TAACGAGAGGGTTGGACTAGATTTCTGTTTTATTCACGATTTAGAACGCA
AAACACTTAGATTAATCTCCCAAAAAGATAAGGGACAAATGCCTACGTAT
TTTATAAATCCAGCATAAATGAACAACACAACAGTCTTAAACAATCTTGG
TTTTTAGAATGAATCAGACGTTGAAACGGCAATAAATGACAGTGGTATCG
ACAGAACTGTGAACGAGGTTAGTTAAGTACAGTTTTAAGTCTTTCCTGCC
TGCCTACTAAAGTTTGAGTACAAATAGCATTCATTCTCTCTTCCTATTCA
TATTTTCAGTCAAGGAAATTGTAGAAAATGTCGGCAAAAATACTATTTAA
CATAGCCTCTTTAACTTTCATTCAAATAATTCGTTTTCAGAGTCAAGAAG
AAGGTAGTGATTCCGATGACTCTTCAGTAAGTACACTTATTTCTCTTTTG
CTTAAAATCCGTAGACTAGTAGTAGGCAAAAAATATTTCTATCTAGGTTA
TTATGGAATTTTTTCTCCAAAGTTTGCTGACATAATTTTCTTACTGACTC
AGTTCTGCCAATTTAGATTTATTTTATGTCACTTCTTGCTATTTAAGGCC
TTTTGAACGACTTTTATTCCCATATCCCCATTTTATCACCAAAATATCCC
ATAATCAACAAATAAAACTATTTGGTTACCTGCCAAATTGAATTCTAACA
AAAATTTGTACATTTGTGGATTCAACGCGAATATTTTTAGGAACTAATAT
TCTAAAGTTAAGATATGACGATTTTTTCTATGAACCATTGAAAGAACTAA
TTATTACGACATAAATTACTACACCAAGCAGAGACCAATGATGTAGTAAT
TTGTTGTAGAGCGAGGTGACACTCTACTCAACAATGGGCTAAATTTCCAT
TTTTATCTGGTTATCCCTTTAAATCTTATTAGTTGTAAAGTACATGACTT
TCCGTGGCGAAGACATAAACAATAAGGATTTACCCTGAAGCTTGCCAGAA
ACTGCACCTATTTGTAACAGCTACTTTATTTATCTTCTTAGTTGGATGAT
GACGTTCGTGATCCAGATTTCAACCCTGACCAATCTGCTTCTGAGGACGA
TAGTAACGACCCCCTTGACGAATTCAACGAAAAAGAAATTGAAAATGCAG
TCATTAAAGTTTTAAATACGTCTTCAATTTCAAACGGCACTGAAGAAATA
GCTGTCAGGCAAACGAATAACGAAATAGATGACGAAAATCATACAACGAA
CTATGGAGATGAAAGAGAAAATGACAATGGAATCGACAATGATATTGGCG
ATCACGAGATTGATAATGGAATGGGT

Coding sequence (CDS) from alignment at scaffold_397:192445..194420-

>TCONS_00063659 ID=TCONS_00063659|Name=TCONS_00063659|organism=Clytia hemisphaerica|type=CDS|length=3294bp|location=Sequence derived from alignment at scaffold_397:192445..194420- (Clytia hemisphaerica)
TTGGATGATGACGTTCGTGATCCAGATTTCAACCCTGACCAATCTGCTTC
TGAGGACGATAGTAACGACCCCCTTGACGAATTCAACGAAAAAGAAATTG
AAAATGCAGTCATTAAAGTTTTAAATACGTCTTCAATTTCAAACGGCACT
GAAGAAATAGCTGTCAGGCAAACGAATAACGAAATAGATGACGAAAATCA
TACAACGAACTATGGAGATGAAAGAGAAAATGACAATGGAATCGACAATG
ATATTGGCGATCACGAGATTGATAATGGAATGGGTAGTCAAGAAGAAGGT
AGTGATTCCGATGACTCTTCAAATGAATCAGACGTTGAAACGGCAATAAA
TGACAGTGGTATCGACAGAACTGTGAACGAGCGTGAAGTGTCGCCATCTT
ACGAACTTCGTCCTCGTAAAGTTCTTATCCCAAATGACGAAGCTGACTCC
CAGACTGGTGGTCCATTCATTTGCAGATGCGAAAAATCATTCATAGTCAA
AGGCGTGTTTGATATGCATGTGGGAAAATGTCTCATTAACAAAGGAAACT
TGGATGATGACGTTCGTGATCCAGATTTCAACCCTGACCAATCTGCTTCT
GAGGACGATAGTAACGACCCCCTTGACGAATTCAACGAAAAAGAAATTGA
AAATGCAGTCATTAAAGTTTTAAATACGTCTTCAATTTCAAACGGCACTG
AAGAAATAGCTGTCAGGCAAACGAATAACGAAATAGATGACGAAAATCAT
ACAACGAACTATGGAGATGAAAGAGAAAATGACAATGGAATCGACAATGA
TATTGGCGATCACGAGATTGATAATGGAATGGGTAGTCAAGAAGAAGGTA
GTGATTCCGATGACTCTTCAAATGAATCAGACGTTGAAACGGCAATAAAT
GACAGTGGTATCGACAGAACTGTGAACGAGCGTGAAGTGTCGCCATCTTA
CGAACTTCGTCCTCGTAAAGTTCTTATCCCAAATGACGAAGCTGACTCCC
AGACTGGTGGTCCATTCATTTGCAGATGCGAAAAATCATTCATAGTCAAA
GGCGTGTTTGATATGCATGTGGGAAAATGTCTCATTAACAAAGGAAACTT
GGATGATGACGTTCGTGATCCAGATTTCAACCCTGACCAATCTGCTTCTG
AGGACGATAGTAACGACCCCCTTGACGAATTCAACGAAAAAGAAATTGAA
AATGCAGTCATTAAAGTTTTAAATACGTCTTCAATTTCAAACGGCACTGA
AGAAATAGCTGTCAGGCAAACGAATAACGAAATAGATGACGAAAATCATA
CAACGAACTATGGAGATGAAAGAGAAAATGACAATGGAATCGACAATGAT
ATTGGCGATCACGAGATTGATAATGGAATGGGTAGTCAAGAAGAAGGTAG
TGATTCCGATGACTCTTCAAATGAATCAGACGTTGAAACGGCAATAAATG
ACAGTGGTATCGACAGAACTGTGAACGAGCGTGAAGTGTCGCCATCTTAC
GAACTTCGTCCTCGTAAAGTTCTTATCCCAAATGACGAAGCTGACTCCCA
GACTGGTGGTCCATTCATTTGCAGATGCGAAAAATCATTCATAGTCAAAG
GCGTGTTTGATATGCATGTGGGAAAATGTCTCATTAACAAAGGAAACTTG
GATGATGACGTTCGTGATCCAGATTTCAACCCTGACCAATCTGCTTCTGA
GGACGATAGTAACGACCCCCTTGACGAATTCAACGAAAAAGAAATTGAAA
ATGCAGTCATTAAAGTTTTAAATACGTCTTCAATTTCAAACGGCACTGAA
GAAATAGCTGTCAGGCAAACGAATAACGAAATAGATGACGAAAATCATAC
AACGAACTATGGAGATGAAAGAGAAAATGACAATGGAATCGACAATGATA
TTGGCGATCACGAGATTGATAATGGAATGGGTAGTCAAGAAGAAGGTAGT
GATTCCGATGACTCTTCAAATGAATCAGACGTTGAAACGGCAATAAATGA
CAGTGGTATCGACAGAACTGTGAACGAGCGTGAAGTGTCGCCATCTTACG
AACTTCGTCCTCGTAAAGTTCTTATCCCAAATGACGAAGCTGACTCCCAG
ACTGGTGGTCCATTCATTTGCAGATGCGAAAAATCATTCATAGTCAAAGG
CGTGTTTGATATGCATGTGGGAAAATGTCTCATTAACAAAGGAAACTTGG
ATGATGACGTTCGTGATCCAGATTTCAACCCTGACCAATCTGCTTCTGAG
GACGATAGTAACGACCCCCTTGACGAATTCAACGAAAAAGAAATTGAAAA
TGCAGTCATTAAAGTTTTAAATACGTCTTCAATTTCAAACGGCACTGAAG
AAATAGCTGTCAGGCAAACGAATAACGAAATAGATGACGAAAATCATACA
ACGAACTATGGAGATGAAAGAGAAAATGACAATGGAATCGACAATGATAT
TGGCGATCACGAGATTGATAATGGAATGGGTAGTCAAGAAGAAGGTAGTG
ATTCCGATGACTCTTCAAATGAATCAGACGTTGAAACGGCAATAAATGAC
AGTGGTATCGACAGAACTGTGAACGAGCGTGAAGTGTCGCCATCTTACGA
ACTTCGTCCTCGTAAAGTTCTTATCCCAAATGACGAAGCTGACTCCCAGA
CTGGTGGTCCATTCATTTGCAGATGCGAAAAATCATTCATAGTCAAAGGC
GTGTTTGATATGCATGTGGGAAAATGTCTCATTAACAAAGGAAACTTGGA
TGATGACGTTCGTGATCCAGATTTCAACCCTGACCAATCTGCTTCTGAGG
ACGATAGTAACGACCCCCTTGACGAATTCAACGAAAAAGAAATTGAAAAT
GCAGTCATTAAAGTTTTAAATACGTCTTCAATTTCAAACGGCACTGAAGA
AATAGCTGTCAGGCAAACGAATAACGAAATAGATGACGAAAATCATACAA
CGAACTATGGAGATGAAAGAGAAAATGACAATGGAATCGACAATGATATT
GGCGATCACGAGATTGATAATGGAATGGGTAGTCAAGAAGAAGGTAGTGA
TTCCGATGACTCTTCAAATGAATCAGACGTTGAAACGGCAATAAATGACA
GTGGTATCGACAGAACTGTGAACGAGCGTGAAGTGTCGCCATCTTACGAA
CTTCGTCCTCGTAAAGTTCTTATCCCAAATGACGAAGCTGACTCCCAGAC
TGGTGGTCCATTCATTTGCAGATGCGAAAAATCATTCATAGTCAAAGGCG
TGTTTGATATGCATGTGGGAAAATGTCTCATTAACAAAGGAAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039901XLOC_039901Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063659-proteinTCONS_00063659-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063659-exon-scaffold_397-1575043694:194413..194420TCONS_00063659-exon-scaffold_397-1575043694:194413..194420Clytia hemisphaericaexon
TCONS_00063659-exon-scaffold_397-1575043694:194188..194277TCONS_00063659-exon-scaffold_397-1575043694:194188..194277Clytia hemisphaericaexon
TCONS_00063659-exon-scaffold_397-1575043694:193880..193951TCONS_00063659-exon-scaffold_397-1575043694:193880..193951Clytia hemisphaericaexon
TCONS_00063659-exon-scaffold_397-1575043694:193554..193613TCONS_00063659-exon-scaffold_397-1575043694:193554..193613Clytia hemisphaericaexon
TCONS_00063659-exon-scaffold_397-1575043694:193345..193380TCONS_00063659-exon-scaffold_397-1575043694:193345..193380Clytia hemisphaericaexon
TCONS_00063659-exon-scaffold_397-1575043694:192445..192729TCONS_00063659-exon-scaffold_397-1575043694:192445..192729Clytia hemisphaericaexon
TCONS_00063659-exon-scaffold_397-1510915933:194413..194420TCONS_00063659-exon-scaffold_397-1510915933:194413..194420Clytia hemisphaericaexon
TCONS_00063659-exon-scaffold_397-1510915933:194188..194277TCONS_00063659-exon-scaffold_397-1510915933:194188..194277Clytia hemisphaericaexon
TCONS_00063659-exon-scaffold_397-1510915933:193880..193951TCONS_00063659-exon-scaffold_397-1510915933:193880..193951Clytia hemisphaericaexon
TCONS_00063659-exon-scaffold_397-1510915933:193554..193613TCONS_00063659-exon-scaffold_397-1510915933:193554..193613Clytia hemisphaericaexon
TCONS_00063659-exon-scaffold_397-1510915933:193345..193380TCONS_00063659-exon-scaffold_397-1510915933:193345..193380Clytia hemisphaericaexon
TCONS_00063659-exon-scaffold_397-1510915933:192445..192729TCONS_00063659-exon-scaffold_397-1510915933:192445..192729Clytia hemisphaericaexon
TCONS_00063659-exon-scaffold_397-1491911889:194413..194420TCONS_00063659-exon-scaffold_397-1491911889:194413..194420Clytia hemisphaericaexon
TCONS_00063659-exon-scaffold_397-1491911889:194188..194277TCONS_00063659-exon-scaffold_397-1491911889:194188..194277Clytia hemisphaericaexon
TCONS_00063659-exon-scaffold_397-1491911889:193880..193951TCONS_00063659-exon-scaffold_397-1491911889:193880..193951Clytia hemisphaericaexon
TCONS_00063659-exon-scaffold_397-1491911889:193554..193613TCONS_00063659-exon-scaffold_397-1491911889:193554..193613Clytia hemisphaericaexon
TCONS_00063659-exon-scaffold_397-1491911889:193345..193380TCONS_00063659-exon-scaffold_397-1491911889:193345..193380Clytia hemisphaericaexon
TCONS_00063659-exon-scaffold_397-1491911889:192445..192729TCONS_00063659-exon-scaffold_397-1491911889:192445..192729Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_397supercontigscaffold_397:192445..194420 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.279788	0.442184	0.800215	0.87401	0.524498	0.541397	0.315296	0.967227	0.758908	0.93143	0.176714	0.126428	0	0	0	0	0	0	0	0	1.33652	1.09341	0.142243	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00063659 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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