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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00063653 ID=TCONS_00063653|Name=TCONS_00063653|organism=Clytia hemisphaerica|type=transcript|length=1659bpRun BLAST on NCBI protein sequence of TCONS_00063653-protein >TCONS_00063653-protein ID=TCONS_00063653-protein|Name=TCONS_00063653-protein|organism=Clytia hemisphaerica|type=polypeptide|length=365bp MQFQEFLKHQLGTATSSQWRSFNTKKLFASKELCTVSVCKNHVAPVTCLSRun BLAST on NCBI transcript from alignment at scaffold_397:59062..64801- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00063653 ID=TCONS_00063653|Name=TCONS_00063653|organism=Clytia hemisphaerica|type=transcript|length=5740bp|location=Sequence derived from alignment at scaffold_397:59062..64801- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_397:59062..64801- >TCONS_00063653 ID=TCONS_00063653|Name=TCONS_00063653|organism=Clytia hemisphaerica|type=CDS|length=10980bp|location=Sequence derived from alignment at scaffold_397:59062..64801- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00063653 vs. Swiss-Prot (Human)
Match: ERCC8 (DNA excision repair protein ERCC-8 OS=Homo sapiens GN=ERCC8 PE=1 SV=1) HSP 1 Score: 168.318 bits (425), Expect = 5.087e-46 Identity = 100/333 (30.03%), Postives = 164/333 (49.25%), Query Frame = 2
Query: 146 HVAPVTCLSLEKQEFRYLLSGSAKGHIVIHDRSLLAGSNGFSTIADISWKR----TGEKCIQRLQWYPLDTGMFFMQT-ENEIKVWDANQLQVAEQFHFTSKLSDMHGKEIG-RNPLIAASSLDKSIFICDLATGSRTHTLTGHDSPVTAVKWSPRKEHVLYSGSTNGKINIWDVRKTKNLLKSLQTTESKK-----------NG-VDSISFTPNGFGLISLNSDGTLSLWKCHNGKQAKVNYAASSANNDRAGSTCVS--NNNQVVFASNDRNVQAYDIYTGEHMKTFNGHFKAVTGVCYNDPFEELITCGLDSKVLIWDNRNYDKVRLQNE 1084
H + L +E E RY+LSG + G IV++D + + ++ A S R ++ +QWYP DTGMF + + +KVWD N LQ A+ F+F + H + ++ L+A + + +CDL +GS +H L GH + AV WSPR +++L + S + ++ +WDVR+ L +L KK NG V+ + FT +G L+++ +D + LW NG+ VNY N+ + VS +++ VF + Y +Y+GE + GH+K V + F+EL + D +L W Y+ V +E
Sbjct: 42 HGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYEPVPDDDE 374 The following BLAST results are available for this feature:
BLAST of TCONS_00063653 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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