TCONS_00063653-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00063653-protein
Unique NameTCONS_00063653-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length365

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00063653-protein ID=TCONS_00063653-protein|Name=TCONS_00063653-protein|organism=Clytia hemisphaerica|type=polypeptide|length=365bp
MQFQEFLKHQLGTATSSQWRSFNTKKLFASKELCTVSVCKNHVAPVTCLS
LEKQEFRYLLSGSAKGHIVIHDRSLLAGSNGFSTIADISWKRTGEKCIQR
LQWYPLDTGMFFMQTENEIKVWDANQLQVAEQFHFTSKLSDMHGKEIGRN
PLIAASSLDKSIFICDLATGSRTHTLTGHDSPVTAVKWSPRKEHVLYSGS
TNGKINIWDVRKTKNLLKSLQTTESKKNGVDSISFTPNGFGLISLNSDGT
LSLWKCHNGKQAKVNYAASSANNDRAGSTCVSNNNQVVFASNDRNVQAYD
IYTGEHMKTFNGHFKAVTGVCYNDPFEELITCGLDSKVLIWDNRNYDKVR
LQNEYHQDDWDAVDD
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_039895XLOC_039895Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00063653TCONS_00063653Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001680WD40_repeat
IPR015943WD40/YVTN_repeat-like_dom
IPR019775WD40_repeat_CS
IPR017986WD40_repeat_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001680WD40 repeatSMARTSM00320WD40_4coord: 213..255
e-value: 0.48
score: 19.0
coord: 169..209
e-value: 4.6E-10
score: 49.4
coord: 262..300
e-value: 220.0
score: 2.2
coord: 303..342
e-value: 5.5E-6
score: 35.9
coord: 32..72
e-value: 0.3
score: 20.2
IPR001680WD40 repeatPFAMPF00400WD40coord: 172..209
e-value: 3.0E-7
score: 30.9
coord: 304..342
e-value: 9.6E-5
score: 23.0
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 310..351
score: 10.876
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 223..264
score: 10.676
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 176..218
score: 14.719
NoneNo IPR availableGENE3D1.10.10.670coord: 202..274
e-value: 2.9E-12
score: 45.8
NoneNo IPR availableGENE3D2.80.10.50coord: 275..363
e-value: 6.2E-14
score: 51.3
IPR015943WD40/YVTN repeat-like-containing domainGENE3D2.130.10.10coord: 13..201
e-value: 5.4E-25
score: 87.6
IPR019775WD40 repeat, conserved sitePROSITEPS00678WD_REPEATS_1coord: 196..210
IPR019775WD40 repeat, conserved sitePROSITEPS00678WD_REPEATS_1coord: 329..343
IPR017986WD40-repeat-containing domainPROSITEPS50294WD_REPEATS_REGIONcoord: 91..351
score: 30.875
IPR017986WD40-repeat-containing domainSUPERFAMILY50978WD40 repeat-likecoord: 36..352

Blast
[Close]
BLAST of TCONS_00063653-protein vs. Swiss-Prot (Human)
Match: ERCC8 (DNA excision repair protein ERCC-8 OS=Homo sapiens GN=ERCC8 PE=1 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 1.524e-48
Identity = 100/333 (30.03%), Postives = 164/333 (49.25%), Query Frame = 0 
Query:   42 HVAPVTCLSLEKQEFRYLLSGSAKGHIVIHDRSLLAGSNGFSTIADISWKR----TGEKCIQRLQWYPLDTGMFFMQT-ENEIKVWDANQLQVAEQFHFTSKLSDMHGKEIG-RNPLIAASSLDKSIFICDLATGSRTHTLTGHDSPVTAVKWSPRKEHVLYSGSTNGKINIWDVRKTKNLLKSLQTTESKK-----------NG-VDSISFTPNGFGLISLNSDGTLSLWKCHNGKQAKVNYAASSANNDRAGSTCVS--NNNQVVFASNDRNVQAYDIYTGEHMKTFNGHFKAVTGVCYNDPFEELITCGLDSKVLIWDNRNYDKVRLQNE 354
            H   +  L +E  E RY+LSG + G IV++D    +  + ++  A  S  R         ++ +QWYP DTGMF   + +  +KVWD N LQ A+ F+F   +   H   +  ++ L+A  +    + +CDL +GS +H L GH   + AV WSPR +++L + S + ++ +WDVR+    L +L     KK           NG V+ + FT +G  L+++ +D  + LW   NG+   VNY     N+ +     VS   +++ VF      +  Y +Y+GE +    GH+K V    +   F+EL +   D  +L W    Y+ V   +E
Sbjct:   42 HGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYEPVPDDDE 374
The following BLAST results are available for this feature:
BLAST of TCONS_00063653-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ERCC81.524e-4830.03DNA excision repair protein ERCC-8 OS=Homo sapiens... [more]
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