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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00063638 ID=TCONS_00063638|Name=TCONS_00063638|organism=Clytia hemisphaerica|type=transcript|length=1768bp
GTTTTGCTCAAGAAATAAAATTACGTCTTTACTGTGAAGTTGCTGAAGTT
GTTAAATGTTTAGACATACAAAGATTTCACTAGACGGCATCATTCAAAAG
ATCACATGCGAAACCACCGTTTAACAATAACTGAACCACGTCATGAACTT
AGCTTTGAAACTCTTGACAACCTATGTCCTTTGCTTCACTACCCTAACCA
CGTTTTTCATCGTGTATAATTTACGGAACATACCGAACAACAATGGAAAT
CTCATTCTGCAAAATATAATTTGTAATGATGACCATGGTAGACGcttctc
aaagaaaatgagaaagaaaTTTGATTCGGCTTCATGGGGAGAAGCTAGAC
CAGCAGATAAGTTTACTAATTTGAAAGACGGTAGAGATGAGGTACCATCT
TTAATCAAGCTTGCAACTCGGCTACCATCTTCAAAAGAGAAAGAGAGCAC
TGAACCGGAAGGCTTaaacgaaatcatcaaaacaatcaaGAGAGATATAT
TTTCGCTTATTTACAAAGATCCTAGACTACGTTACGATAAAGAACTACAG
CCAGATTTAAGTAAATTTAAAGAACCCTTTTCTTTGTTTAGTGAAGACCA
GATATTACTGCGATCCATTTTTCGTGCGCGAGAAGGTTCAATCGATTTCG
ATAATGATCGAATTCAAaagcaaatttctttgaaaataaaacgaACGGAC
CCGTCAAAAAAACTGATACTTTTGATGTTTAAAAGTAATGATTTGAACGA
ACATGGACTGGTAACGAATAAATGTCATCATAAAGATTGTATATTCACCA
ATGATGTTTCAGAAGctgaaaatgctgacgtcattgtttttaaTGGTCCA
TCAAAACAAATGATAGATCACACACGAAATCGAAAGAATCAAATTTGGAT
TTATCATACTATTGAGTCGCCTGTGCATAACCTAAACTTTGATACACCTG
TTCAAATAAATTGGACTGCTACGTACAGGTCTGATAGTACCATTCCAACA
CCATATGCTAAATTTGTCCCCTTTGAGCATATTGAACGTTTACCTTATGT
GGCTGATAAGAATTATGCGACAGGAAAAATTAAATTAGCAGCTTTTGTGG
TTTCAAACTGTGATGCAGAAAATGGCCGATTGGATTATATTTGGGAACTA
AAAAAATTTGCGTCGGTAGATATTTACGGTGCTTGTGGTGATTTGAAATG
CAACAGGGATGAATGTTTCGAGGTCATcaaaaaagattataaattttACA
TGGCATTTGAGAATTCCAATTGCAGAGAATATATCACAGAGAAATTCTTT
CGCAATGCCCTACAGCATGACGTCATACCAATTGTAATGGGAGCACATCC
AGATGATTACAAACGAGTTGCTCCACCCAATAGTTTCATACATGTGGATG
AGTTCAACTCGCCAAGACAACTCGCCGAATACATGCACATACTAGATAAT
AATGACGATTTATATAATGAATATTTTCGTTGGAAGGGTACTGGAGAGTT
CATCAATTCGAAATTTGTTTGTAGAGTCTGTGCAATGGTTCAAGCCACTC
CTTCTTTGCCGTTCGCTTCGTATGATAtcaataaaatgctgacgtcagca
aaacacCAATGTTTATCTAATGATCCTACCAATAATAAATGGTTTTCgtg
gaaaagaaagaaactaaAATAGTTTATATGATATTAGATGTATAAGATAG
CGTTTTGCGTATGATATATttgtttagtttttacaaaagaaTAAACCAGT
CAATCCTGCGGTAGTGAT Run BLAST on NCBI transcript from alignment at scaffold_397:126497..133886+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00063638 ID=TCONS_00063638|Name=TCONS_00063638|organism=Clytia hemisphaerica|type=transcript|length=7390bp|location=Sequence derived from alignment at scaffold_397:126497..133886+ (Clytia hemisphaerica)
GTTTTGCTCAAGAAATAAAATTACGTCTTTACTGTGAAGTTGCTGAAGTT
GTTAAATGTTTAGGTAGTGTGTTATgttgtgatttttcagcttgtgTGTG
TAATATAAAATATTATTTCGGCGATctaaaaaatatctgcaatctgattg
gttaaaaagtacaatatatcttgtattttacatgtaaaaatataaattga
cgaaaagatgttgttgcattgtagcggtagcagcaatctaacgtcacttt
acGTCACGCTACAAactgccctgcgcttttttccaacacaaaagtgtatt
ttttgggtcaccgataaaccagttatcagacatttgctcgctcgtacaat
atggaagtATTGGGCCTAAAATTTCTTCagaaattacacgtttttagagt
ctgcaaagccttagaatgtttttaaattattttggaCTCGAAGACCTTGT
GCTCTTATACTAAAAACGTGTACCTGAATGAtaaaaaagcaagataaaag
TGTACATTAAGTTTACTCATTTACGCGTTTCTTTTAacaacatccaaaat
ttctCAAGCGCTcagatatttttaactttttgagctttagaGCCTACTAa
caatattcttaaaatgttcttatattcaccattttgaaagtattttcgTG
CAATTCCCTTAGAAATTTGGCATTCAAAGTCcaccaagccttaaaatgtt
taacttgttcttgatattttggcaaTCGAATTCATGTTCTTATGAgattt
gttctcataaaaaatgttgttctcaATTTGTTCTCAAGCACATGaagttt
gaattttaaaaataaaaatcaagccTGAGGTATATCCACTCTCACGAGCA
TAACTTGTTATAATTCCTCTcataattaaatatttcccgttttccaaaag
ggaaatatttattaaaacgggctttctccgtcataataataatttcccgt
gtcaaaacgccttccgtacgcccNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTgtcgaaaaagatga
gcatatttatttttattataagcatctactttataagaatcaaatcaata
actcttgattgaaggcaatatatctttcggtgattagttattagaaagta
aacaaaggatggcgaaaaagatgagcatacttatttttattataaagcat
ctactttataagaatcaaatcaataactcttgattgaaggcaatatatct
tttggtaattagtccttacaaagtaaacaaagtatggcgaaaaagatgag
catatttatttttattataagtgtctactttataagaatcaaatcaattt
cacaattttcggcgttttcactgtgataacatgtgagcgacaacttctct
ttttgagacgtgagcgaccgtctatcccatgtcatctcaaaagtaaagtt
gaaaccaagctttcttcaaacttaaattttatcgataaaacgaatttaaa
atctacacatgcgtaattttgctCACTTAGTAATataggaagctctgcgg
ggcattcttagcgacagctacttgctaatatatgtcaataatgaccttca
tttttaaggaaatatttagtcgcatttttgcgaatcttgttgctattaat
tcgattttcattaCACCTTAGATACTGCTGATGCGATTATTAATTAAGCT
aatttaaactcaaatttcGTGCTATACTGATTCATGTGAGGTATTTTAAT
GAAGTGAATGCTCATTTAGTAAGTTTTGACTAAATTTTAGTTTAGCTAAG
TTTTTCtggtttgaaatttaaaaaatatgtagttttttttttttgcttgc
atCTTATTTATTCCTGATATTATTAGTAAAAAACCTTCATTTCAGAGCTG
AGAAATTCCATGCGAATTTCATGTGgaatctctttaactcgaatgtctcc
ttaagtcgaacaagttttatgatcCCTTCCGACAACAATGCCTAATAAAC
CTCACTCCATATCTCAAAGAAATTATATTCCTGAtatgtgttcgagttat
ggagactccactgtcgATACGTAGTAGAAGTTGAATATTCACGTTTAATT
TTTATGGTCTTCAAAAGAGATTGATTCGTTGTTCATGTAGTTTCTCTTTT
TATACTTCTTGGCGACTCGTTATTTTCTAAATGAAACATTGTCCTGCAGT
GTCCAACTTGGTGCAGACTGTTTTAAAGGAAAAGCTTAGGAGGAGCATGT
TAAATCTGTATTTTCTTTCTCCTAATGAGAGAACTGTGCTTTTTATTTCC
CCCAACTGAGATTCGTTTTCTTGTAGCTAATTTAGTACATTCTAGAAAAC
GGGAACTGTTATTTCATTTATTCTAGTACAACAGTGTAAAGGGAAACCAC
TGAATTTTAACTCGAATgataacatttttaggttttttgaaCCCCCTTTG
ATTTCTATTGCATCGCTATATTTTATTGTAAATGGAAATGGTAACTTGAA
GCTTAGACTGAAATTTAAGagggtttttttttgctttttatcagCAAACT
TCGACCTTTTGACCAAAGAAGACATgttcttgttttcattttgcaatttt
ttgttcTATATTTGATATATTCACCCCAAGTTTTTTCGTTGCTGTAAAGG
AAAGTCATAACAAAGTTTTGAAGGAATGATTCTGAAGGCTTTttcattga
gatttcaatattCCATCGAGCTGAGAAAGGACGGAAATGATTCAACGTTT
CAACTTTTCCCTTGATAATCAAGTTCAACAATATTACAGAACGATTCAAG
TTGTATGAAAATTATCATTCCTTCTTTTCGTCTTTTTTAGACATACAAAG
ATTTCACTAGACGGCATCATTCAAAAGATCACATGCGAAACCACCGTTTA
ACAATAACTGAACCACGTCATGAACTTAGCTTTGAAACTCTTGACAACCT
ATGTCCTTTGCTTCACTACCCTAACCACGTTTTTCATCGTGTATAATTTA
CGGAACATACCGAACAACAATGGAAATCTCATTCTGCAAAATATAATTTG
TAATGATGACCATGGTAGACGcttctcaaagaaaatgagaaagaaaTTTG
ATTCGGCTTCATGGGGAGAAGCTAGACCAGCAGATAAGTTTACTAATTTG
AAAGACGGTAGAGATGAGGTACCATCTTTAATCAAGCTTGCAACTCGGCT
ACCATCTTCAAAAGAGAAAGAGAGCACTGAACCGGAAGGCTTaaacgaaa
tcatcaaaacaatcaaGAGAGATATATTTTCGCTTATTTACAAAGATCCT
AGACTACGTTACGATAAAGAACTACAGCCAGATTTAAGTAAATTTAAAGA
ACCCTTTTCTTTGTTTAGTGAAGACCAGATATTACTGCGATCCATTTTTC
GTGCGCGAGAAGGTTCAATCGATTTCGATAATGATCGAATTCAAaagcaa
atttctttgaaaataaaacgaACGGACCCGTCAAAAAAACTGATACTTTT
GATGTTTAAAAGTAATGATTTGAACGAACATGGACTGGTAACGAATAAAT
GTCATCATAAAGATTGTATATTCACCAATGATGTTTCAGAAGctgaaaat
gctgacgtcattgtttttaaTGGTCCATCAAAACAAATGATAGATCACAC
ACGAAATCGAAAGAATCAAATTTGGATTTATCATACTATTGAGTCGCCTG
TGCATAACCTAAACTTTGATACACCTGTTCAAATAAATTGGACTGCTACG
TACAGGTCTGATAGTACCATTCCAACACCATATGCTAAATTTGTCCCCTT
TGAGCATATTGAACGTTTACCTTATGTGGCTGATAAGAATTATGCGACAG
GAAAAATTAAATTAGCAGCTTTTGTGGTTTCAAACTGTGATGCAGAAAAT
GGCCGATTGGATTATATTTGGGAACTAAAAAAATTTGCGTCGGTAGATAT
TTACGGTGCTTGTGGTGATTTGAAATGCAACAGGGATGAATGTTTCGAGG
TCATcaaaaaagattataaattttACATGGCATTTGAGAATTCCAATTGC
AGAGAATATATCACAGAGAAATTCTTTCGCAATGCCCTACAGTAAGTAGC
TCGATCATTTGCGAATTTAGTTTACATGCCTCACTCGGAATTTTTGTGTA
CTAACAATTTAGTACCTTGAAGAAACCTTTTTGGGCGAGAATGCAACATA
GCGAATTTAGGTTTGATGGAGGTTAAAACAAATTTCGGCATAGATGAAAA
TACACATTTTCTAATAAGCAACCCAGTTGCTAAGACTCGAGCTCTCAAAT
TAGCCAttttttcactatctcgtaaagtaaaagctttttagataatctaa
gcacgacaaacgatagcccttaacccaataagcataaatatggtataata
tcaagTTTGGTGGTTAGAAAATGAGCTAAGCAGCCCCAGTAGCCCTCATC
CGAAAAATGGAGTTACTTATAAAAGTGCGTAACTGATGTATACCTTGGCA
ttcgtcaaaattaaaaatcttcACATTGATTTGTTTCTCCCAAAAGATAA
GGTTCTCACCTCCTATTTGAGTCACTCTAACTGTCAAATGAACAAACGTG
TCAAAAGGAACACTTTTACCCTTCTTGCCTTCTTACACCCTTTTCTCACA
GAACCGGTAGAATCTTTTCAGTCAGTGGagttaaaaataacggactggaA
ATCAATGGgggttgatattcccatgtttcttatggctggggattttaatt
ccattgttttcgagcccGAAAGTTCAGTGGGGATTGAAAAGATAGCACAA
TAtattgcagtgaggatttgcttatctgattattttcagcgggggcaaaa
atttgagtatATTTTTCACTGTGGACTATATTCTAGCCAAACAATCTAGA
GGGAaggggttccagtgggtctgtgagaagggggtgtcttctTTTAGTTG
TTTCAAATCTTAACTTCATTAAGATTAATAAAATTTCCTTTTAGAAGGGC
TTGAagtaatttgatttttcaaatctttcccAAACGTATATACTTTGCAG
CCTTTACTTTGGGTGTCTGGAATATCAGCCGAACTTATCTGAGGGGTTCC
CAAACAAAACTTTCATGTTTACCTTCTATCTTGCAGGCATGACGTCATAC
CAATTGTAATGGGAGCACATCCAGATGATTACAAACGAGTTGCTCCACCC
AATAGTTTCATACATGTGGATGAGTTCAACTCGCCAAGACAACTCGCCGA
ATACATGCACATACTAGATAATAATGACGATTTATATAATGAATATTTTC
GTTGGAAGGGTACTGGAGAGTTCATCAATTCGAAATTTGTTTGTAGAGTC
TGTGCAATGGTTCAAGCCACTCCTTCTTTGCCGTTCGCTTCGTATGATAt
caataaaatgctgacgtcagcaaaacacCAATGTTTATCTAATGATCCTA
CCAATAATAAATGGTTTTCgtggaaaagaaagaaactaaAATAGTTTATA
TGATATTAGATGTATAAGATAGCGTTTTGCGTATGATATATttgtttagt
ttttacaaaagaaTAAACCAGTCAATCCTGCGGTAGTGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00063638-exon-scaffold_397-1491911889:126497..126559 | TCONS_00063638-exon-scaffold_397-1491911889:126497..126559 | Clytia hemisphaerica | exon |
| TCONS_00063638-exon-scaffold_397-1510915933:126497..126559 | TCONS_00063638-exon-scaffold_397-1510915933:126497..126559 | Clytia hemisphaerica | exon |
| TCONS_00063638-exon-scaffold_397-1575043694:126497..126559 | TCONS_00063638-exon-scaffold_397-1575043694:126497..126559 | Clytia hemisphaerica | exon |
| TCONS_00063638-exon-scaffold_397-1491911889:131137..132387 | TCONS_00063638-exon-scaffold_397-1491911889:131137..132387 | Clytia hemisphaerica | exon |
| TCONS_00063638-exon-scaffold_397-1510915933:131137..132387 | TCONS_00063638-exon-scaffold_397-1510915933:131137..132387 | Clytia hemisphaerica | exon |
| TCONS_00063638-exon-scaffold_397-1575043694:131137..132387 | TCONS_00063638-exon-scaffold_397-1575043694:131137..132387 | Clytia hemisphaerica | exon |
| TCONS_00063638-exon-scaffold_397-1491911889:133433..133886 | TCONS_00063638-exon-scaffold_397-1491911889:133433..133886 | Clytia hemisphaerica | exon |
| TCONS_00063638-exon-scaffold_397-1510915933:133433..133886 | TCONS_00063638-exon-scaffold_397-1510915933:133433..133886 | Clytia hemisphaerica | exon |
| TCONS_00063638-exon-scaffold_397-1575043694:133433..133886 | TCONS_00063638-exon-scaffold_397-1575043694:133433..133886 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_397 | supercontig | scaffold_397:126497..133886 + |
Blast
BLAST of TCONS_00063638 vs. Swiss-Prot (Human)
Match: FUT6 (Alpha-(1,3)-fucosyltransferase 6 OS=Homo sapiens GN=FUT6 PE=1 SV=1) HSP 1 Score: 147.902 bits (372), Expect = 3.859e-39 Identity = 97/296 (32.77%), Postives = 145/296 (48.99%), Query Frame = 2
Query: 701 PSKKLILLMFKSNDLNEHGLVTNKCHH-----KDCIFTNDVSEAENADVIVFN------GPSKQMIDHTRNRKNQIWIYHTIESPVHNLNFDTP-VQINWTATYRSDSTIPTPYAKFVPFEHIERLPYVADKNYATGKIKLAAFVVSNCDAENGRLDYIWELKKFASVDIYGACGDLKCNRDECFEVIKKDYKFYMAFENSNCREYITEKFFRNALQHDVIPIVMGAHPDDYKRVAPPNSFIHVDEFNSPRQLAEYMHILDNNDDLYNEYFRWKGT---GEFINSKFVCRVCAMVQ 1543
P+ + L++ + N+ + +C DC T D AD ++ + PS Q+ R R+ Q WI+ ++ESP H N T +YRSDS I TPY P+ P + + K +L A+ VSN + R+ Y L+ VD+YG + E + + YKFY+AFENS +YITEK +RNAL+ +P+V+G +Y+R PP++FIHVD+F SP+ LA Y+ LD + Y YFRW+ T F + C+ C +Q
Sbjct: 57 PAHSIPLILLWTWPFNK-PIALPRCSEMVPGTADCNITADRKVYPQADAVIVHHREVMYNPSAQLPRSPR-RQGQRWIWFSMESPSHCWQLKAMDGYFNLTMSYRSDSDIFTPYGWLEPWSGQPAHPPLN----LSAKTELVAWAVSNWGPNSARVRYYQSLQAHLKVDVYGRSHK-PLPQGTMMETLSR-YKFYLAFENSLHPDYITEKLWRNALEAWAVPVVLGPSRSNYERFLPPDAFIHVDDFQSPKDLARYLQELDKDHARYLSYFRWRETLRPRSFSWALAFCKACWKLQ 344
The following BLAST results are available for this feature:
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