XLOC_039888 (gene) - C. hemisphaerica

Overview
NameXLOC_039888
Unique NameXLOC_039888
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at scaffold_397:123641..133886+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_039888 ID=XLOC_039888|Name=XLOC_039888|organism=Clytia hemisphaerica|type=gene|length=10246bp|location=Sequence derived from alignment at scaffold_397:123641..133886+ (Clytia hemisphaerica)
CCAGCTATAATTCTTCATTATGATCTCGAACAAGAGAGGAATGAGATTAA
TGGTTCTTTACGTAATCATATTCGCGCTAACATCCACATTTTTCATGTGG
TACAGTATCGACCATCTGCGCATGCGTCAGATCCCGCATCAATCAATGAC
TCAGATCCAACCCTCTTGTAACTGTACCACCtgttcaaaagataaaaatc
ttgGAAACGCAAAGTCCGATTTTCAAAGTGTTCGTGAAGTTGCTAAATCT
CTCAAAGTTGTCACGAATGAGATAGATTATTTCACACAATCAAAAAGCAC
AATGTTTGATCGTTCACTTTCTATTTACGATCCAGAGGACCAGAATATAC
TTCAAACGTTATTTCCAATCGATGAAAATGGTGTCGAAACATATTCTAAA
AATCGTCTCCTAAATCAATTAAATGTACGTTTAAAACACGCAGAACCGAA
ACTCATATTAGTAAATTTCTATGATAACCATTTAACAGCTAGTGCAATAC
ATAATAATGTATGCCCTGTTGACAATTGTCAACTGACCTCAGACAAGAAA
CAATTTCGTAATGCTGATGCAGTCATTTCTCATCAGATTCCTAAACGCAT
CCGAAGACCTGTACAAAAACCAGACCAGATTTGGATATATCACCAACTAG
AATCGCCAGCTACAATACCGTATATTACTGGGAATAAAGGGTCTGTGAAT
TGGACTGCCACTTTTCGTTCAGATAGTGTTTTGCCAACACCTTACGGACT
GTTTATTCGTCATGACCATGTTAACGAAATGCCTCTAAAAGCGGATAAAA
ATTATGCGTTTGGGAAAACTAAAATAGCAGCTTGGTTTGTCTCGAATTGT
GGAGGTTTTAACGGCCGTATGGCGTATGTAAAAGAACTACAGAAATATAT
AAAGATTGATATTTATGGGTTTTGTGGGCCGTTGACATGCAAACGAGGCT
TGGGTGGTGATAAATGTTTAGAAATTTTGAGAAGTGACTACAAATTTTAT
TTATCGTTCGAAAATTCCAATTGTCGGGATTACATTACGGAGAAATTCTT
CCACAATGCTTTGCAGTAAGTATCTTTACTCCAAAACTCATCAACATCAA
ATAGAAACTTGGGAGTCATACGAAATTTCGACAAGATTTCAATATGTTCT
AGAAGTAAAATGTGAAAGCTTTCTTTGCTTTACTTTTTCTTCTCTGCTTT
TTCTTAAGATTAAAACTTTTGTGAACAGGGGGTCAATAAAAACACTTTAC
GAAATCATGACTGCTTTTTGACATAAAAGTATCGACACCACCCACTGGCC
TTTTTCACGAAAGTATTCAAATTCAAAATCTTTTTCAAAACCAATTTGAC
ATTCGTTCTTTCTTGATAAGTTCCTGGGGAATTTTCCATTTAAATGAATC
TCTTCTATAGAGAAACTATAAACATGTCATCGCGATGTCCAGAATAACTT
CTTGACTTGCGCCTtccccccccccccccttttgatTCGAACTTTTTCTC
CAAgcgtttttgacatttttgttaaCTTAGTATTTCTTTACTTTCAATCT
TCCAGGCATGACGTCATACCAATAGTAATGGGAGCACATCCAGATGATTA
CAAGCGAGTTGCTCCACCCAATAGTTTCATACACGTGGACGAGTTCAACT
CGCCAAGACAACTCGCCGAATACATGCACATACTAGATAATAATGATGAT
TTATATAATGAATATTTTCGTTGGAAGGGTACTGGAGAGTTCATCAATAC
TAAATTTGTTTGTAGAGTCTGTGCAATGGTTCAGATTGCATCTATCTTTC
CTATGTGGTATCGAGACATAAGCCAATGGTGGACTGAGGAACAATGTGTT
CGCCCTGATCAATTCAAATGGTCCACTTGGAGATAAAAATGGATTGGTAA
GTTCGTTTCATAGTTCACGTTTGTTCATCAGAAAACTTCAAAGCCTTTAT
AACCTTCTTTTCCTACCGTATTTTCAACTTAAGttttttaaggattttgt
ttttacgaagaaattgagtgagaaattttgttttgaagagcaTTGAACTG
TTGCAGATTTGCTAAATCTTTTCAAACAGTGTGTACACAAGACCACCATG
ACCaaattgttaagaacattttaaggctttgcagaccctaaaatacccaa
tttcttaagaaaatggtgaaaataagaacatgttaagaacatttttaggc
ttaaaactcgaaaagttaagaacatccgaagcctttaaaattttggatgt
tcttattaaaaacgtgtataagCGGATTTAAGAcgtttaactttttgaga
ttttgctttATCACGGAAAGTTTGTGCTCTTTCtatagactgggaatcca
gtcgtttataacgtttttgttgaaagcgggaaatttttatgtcgggatat
ggttaaaataaattgatgctcctgtcaagttttctacttcctatttttta
ctgagttaagtcgtcaAGCATGCTAGACTACTCTTTCTACAATAATGTAC
CAACTTCGAAGATCTTTGGGAACTTAGAGGATAAATGACCTTTCTGAATA
TAACTTAAGtttgaataaagtttttttgcttgagTACGGTAAGTACATCC
TAAAAGAAAAGCCATCTAACTTTGAAAAACCAGAAATTTCGGACGTTCTT
TAGAATCCGCAAAGATTTAGAATATTCTACAATCTGTGGAAAAATTTGGC
CTTGATACCGTATTCCCAAGCCGTGGTTTTCGAGTCTGTCCTGCTTATTT
TTAAACGAGATTGTTTAAATATTTTATACTGAAGATGTGTTAcagtgttt
ttcttttgaaatctcATTAGAAGGATTCTGTATAGATACTTTGCTGAGAA
AGAAATGTTTTGCTCAAGAAATAAAATTACGTCTTTACTGTGAAGTTGCT
GAAGTTGTTAAATGTTTAGGTAGTGTGTTATgttgtgatttttcagcttg
tgTGTGTAATATAAAATATTATTTCGGCGATctaaaaaatatctgcaatc
tgattggttaaaaagtacaatatatcttgtattttacatgtaaaaatata
aattgacgaaaagatgttgttgcattgtagcggtagcagcaatctaacgt
cactttacGTCACGCTACAAactgccctgcgcttttttccaacacaaaag
tgtattttttgggtcaccgataaaccagttatcagacatttgctcgctcg
tacaatatggaagtATTGGGCCTAAAATTTCTTCagaaattacacgtttt
tagagtctgcaaagccttagaatgtttttaaattattttggaCTCGAAGA
CCTTGTGCTCTTATACTAAAAACGTGTACCTGAATGAtaaaaaagcaaga
taaaagTGTACATTAAGTTTACTCATTTACGCGTTTCTTTTAacaacatc
caaaatttctCAAGCGCTcagatatttttaactttttgagctttagaGCC
TACTAacaatattcttaaaatgttcttatattcaccattttgaaagtatt
ttcgTGCAATTCCCTTAGAAATTTGGCATTCAAAGTCcaccaagccttaa
aatgtttaacttgttcttgatattttggcaaTCGAATTCATGTTCTTATG
AgatttgttctcataaaaaatgttgttctcaATTTGTTCTCAAGCACATG
aagtttgaattttaaaaataaaaatcaagccTGAGGTATATCCACTCTCA
CGAGCATAACTTGTTATAATTCCTCTcataattaaatatttcccgttttc
caaaagggaaatatttattaaaacgggctttctccgtcataataataatt
tcccgtgtcaaaacgccttccgtacgcccNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTgtcgaaaa
agatgagcatatttatttttattataagcatctactttataagaatcaaa
tcaataactcttgattgaaggcaatatatctttcggtgattagttattag
aaagtaaacaaaggatggcgaaaaagatgagcatacttatttttattata
aagcatctactttataagaatcaaatcaataactcttgattgaaggcaat
atatcttttggtaattagtccttacaaagtaaacaaagtatggcgaaaaa
gatgagcatatttatttttattataagtgtctactttataagaatcaaat
caatttcacaattttcggcgttttcactgtgataacatgtgagcgacaac
ttctctttttgagacgtgagcgaccgtctatcccatgtcatctcaaaagt
aaagttgaaaccaagctttcttcaaacttaaattttatcgataaaacgaa
tttaaaatctacacatgcgtaattttgctCACTTAGTAATataggaagct
ctgcggggcattcttagcgacagctacttgctaatatatgtcaataatga
ccttcatttttaaggaaatatttagtcgcatttttgcgaatcttgttgct
attaattcgattttcattaCACCTTAGATACTGCTGATGCGATTATTAAT
TAAGCTaatttaaactcaaatttcGTGCTATACTGATTCATGTGAGGTAT
TTTAATGAAGTGAATGCTCATTTAGTAAGTTTTGACTAAATTTTAGTTTA
GCTAAGTTTTTCtggtttgaaatttaaaaaatatgtagtttttttttttt
gcttgcatCTTATTTATTCCTGATATTATTAGTAAAAAACCTTCATTTCA
GAGCTGAGAAATTCCATGCGAATTTCATGTGgaatctctttaactcgaat
gtctccttaagtcgaacaagttttatgatcCCTTCCGACAACAATGCCTA
ATAAACCTCACTCCATATCTCAAAGAAATTATATTCCTGAtatgtgttcg
agttatggagactccactgtcgATACGTAGTAGAAGTTGAATATTCACGT
TTAATTTTTATGGTCTTCAAAAGAGATTGATTCGTTGTTCATGTAGTTTC
TCTTTTTATACTTCTTGGCGACTCGTTATTTTCTAAATGAAACATTGTCC
TGCAGTGTCCAACTTGGTGCAGACTGTTTTAAAGGAAAAGCTTAGGAGGA
GCATGTTAAATCTGTATTTTCTTTCTCCTAATGAGAGAACTGTGCTTTTT
ATTTCCCCCAACTGAGATTCGTTTTCTTGTAGCTAATTTAGTACATTCTA
GAAAACGGGAACTGTTATTTCATTTATTCTAGTACAACAGTGTAAAGGGA
AACCACTGAATTTTAACTCGAATgataacatttttaggttttttgaaCCC
CCTTTGATTTCTATTGCATCGCTATATTTTATTGTAAATGGAAATGGTAA
CTTGAAGCTTAGACTGAAATTTAAGagggtttttttttgctttttatcag
CAAACTTCGACCTTTTGACCAAAGAAGACATgttcttgttttcattttgc
aattttttgttcTATATTTGATATATTCACCCCAAGTTTTTTCGTTGCTG
TAAAGGAAAGTCATAACAAAGTTTTGAAGGAATGATTCTGAAGGCTTTtt
cattgagatttcaatattCCATCGAGCTGAGAAAGGACGGAAATGATTCA
ACGTTTCAACTTTTCCCTTGATAATCAAGTTCAACAATATTACAGAACGA
TTCAAGTTGTATGAAAATTATCATTCCTTCTTTTCGTCTTTTTTAGACAT
ACAAAGATTTCACTAGACGGCATCATTCAAAAGATCACATGCGAAACCAC
CGTTTAACAATAACTGAACCACGTCATGAACTTAGCTTTGAAACTCTTGA
CAACCTATGTCCTTTGCTTCACTACCCTAACCACGTTTTTCATCGTGTAT
AATTTACGGAACATACCGAACAACAATGGAAATCTCATTCTGCAAAATAT
AATTTGTAATGATGACCATGGTAGACGcttctcaaagaaaatgagaaaga
aaTTTGATTCGGCTTCATGGGGAGAAGCTAGACCAGCAGATAAGTTTACT
AATTTGAAAGACGGTAGAGATGAGGTACCATCTTTAATCAAGCTTGCAAC
TCGGCTACCATCTTCAAAAGAGAAAGAGAGCACTGAACCGGAAGGCTTaa
acgaaatcatcaaaacaatcaaGAGAGATATATTTTCGCTTATTTACAAA
GATCCTAGACTACGTTACGATAAAGAACTACAGCCAGATTTAAGTAAATT
TAAAGAACCCTTTTCTTTGTTTAGTGAAGACCAGATATTACTGCGATCCA
TTTTTCGTGCGCGAGAAGGTTCAATCGATTTCGATAATGATCGAATTCAA
aagcaaatttctttgaaaataaaacgaACGGACCCGTCAAAAAAACTGAT
ACTTTTGATGTTTAAAAGTAATGATTTGAACGAACATGGACTGGTAACGA
ATAAATGTCATCATAAAGATTGTATATTCACCAATGATGTTTCAGAAGct
gaaaatgctgacgtcattgtttttaaTGGTCCATCAAAACAAATGATAGA
TCACACACGAAATCGAAAGAATCAAATTTGGATTTATCATACTATTGAGT
CGCCTGTGCATAACCTAAACTTTGATACACCTGTTCAAATAAATTGGACT
GCTACGTACAGGTCTGATAGTACCATTCCAACACCATATGCTAAATTTGT
CCCCTTTGAGCATATTGAACGTTTACCTTATGTGGCTGATAAGAATTATG
CGACAGGAAAAATTAAATTAGCAGCTTTTGTGGTTTCAAACTGTGATGCA
GAAAATGGCCGATTGGATTATATTTGGGAACTAAAAAAATTTGCGTCGGT
AGATATTTACGGTGCTTGTGGTGATTTGAAATGCAACAGGGATGAATGTT
TCGAGGTCATcaaaaaagattataaattttACATGGCATTTGAGAATTCC
AATTGCAGAGAATATATCACAGAGAAATTCTTTCGCAATGCCCTACAGTA
AGTAGCTCGATCATTTGCGAATTTAGTTTACATGCCTCACTCGGAATTTT
TGTGTACTAACAATTTAGTACCTTGAAGAAACCTTTTTGGGCGAGAATGC
AACATAGCGAATTTAGGTTTGATGGAGGTTAAAACAAATTTCGGCATAGA
TGAAAATACACATTTTCTAATAAGCAACCCAGTTGCTAAGACTCGAGCTC
TCAAATTAGCCAttttttcactatctcgtaaagtaaaagctttttagata
atctaagcacgacaaacgatagcccttaacccaataagcataaatatggt
ataatatcaagTTTGGTGGTTAGAAAATGAGCTAAGCAGCCCCAGTAGCC
CTCATCCGAAAAATGGAGTTACTTATAAAAGTGCGTAACTGATGTATACC
TTGGCAttcgtcaaaattaaaaatcttcACATTGATTTGTTTCTCCCAAA
AGATAAGGTTCTCACCTCCTATTTGAGTCACTCTAACTGTCAAATGAACA
AACGTGTCAAAAGGAACACTTTTACCCTTCTTGCCTTCTTACACCCTTTT
CTCACAGAACCGGTAGAATCTTTTCAGTCAGTGGagttaaaaataacgga
ctggaAATCAATGGgggttgatattcccatgtttcttatggctggggatt
ttaattccattgttttcgagcccGAAAGTTCAGTGGGGATTGAAAAGATA
GCACAATAtattgcagtgaggatttgcttatctgattattttcagcgggg
gcaaaaatttgagtatATTTTTCACTGTGGACTATATTCTAGCCAAACAA
TCTAGAGGGAaggggttccagtgggtctgtgagaagggggtgtcttctTT
TAGTTGTTTCAAATCTTAACTTCATTAAGATTAATAAAATTTCCTTTTAG
AAGGGCTTGAagtaatttgatttttcaaatctttcccAAACGTATATACT
TTGCAGCCTTTACTTTGGGTGTCTGGAATATCAGCCGAACTTATCTGAGG
GGTTCCCAAACAAAACTTTCATGTTTACCTTCTATCTTGCAGGCATGACG
TCATACCAATTGTAATGGGAGCACATCCAGATGATTACAAACGAGTTGCT
CCACCCAATAGTTTCATACATGTGGATGAGTTCAACTCGCCAAGACAACT
CGCCGAATACATGCACATACTAGATAATAATGACGATTTATATAATGAAT
ATTTTCGTTGGAAGGGTACTGGAGAGTTCATCAATTCGAAATTTGTTTGT
AGAGTCTGTGCAATGGTTCAAGCCACTCCTTCTTTGCCGTTCGCTTCGTA
TGATAtcaataaaatgctgacgtcagcaaaacacCAATGTTTATCTAATG
ATCCTACCAATAATAAATGGTTTTCgtggaaaagaaagaaactaaAATAG
TTTATATGATATTAGATGTATAAGATAGCGTTTTGCGTATGATATATttg
tttagtttttacaaaagaaTAAACCAGTCAATCCTGCGGTAGTGAT
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00063637TCONS_00063637Clytia hemisphaericatranscript
TCONS_00063638TCONS_00063638Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00063637-proteinTCONS_00063637-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_397supercontigscaffold_397:123641..133886 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
7.03	7.99	3.3	1.21	3.9	2.89	5.12	5.45	3.21	2.52	3.86	2.73	4.03	3.92	3.95	5.7	5.67	5.5	1.04	1.57	6.51	5.44	13.67	11.53	3.13	6.11	2.65	1.47	6.74	6.41