Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00063636 ID=TCONS_00063636|Name=TCONS_00063636|organism=Clytia hemisphaerica|type=transcript|length=1260bpRun BLAST on NCBI protein sequence of TCONS_00063636-protein >TCONS_00063636-protein ID=TCONS_00063636-protein|Name=TCONS_00063636-protein|organism=Clytia hemisphaerica|type=polypeptide|length=311bp MPKKKTGARKKAEKQKQRQKDIQSGSKTISITKYPCNFIMECDKCGRMQKRun BLAST on NCBI transcript from alignment at scaffold_397:98994..121366+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00063636 ID=TCONS_00063636|Name=TCONS_00063636|organism=Clytia hemisphaerica|type=transcript|length=22373bp|location=Sequence derived from alignment at scaffold_397:98994..121366+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_397:98994..121366+ >TCONS_00063636 ID=TCONS_00063636|Name=TCONS_00063636|organism=Clytia hemisphaerica|type=CDS|length=8424bp|location=Sequence derived from alignment at scaffold_397:98994..121366+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2 Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00063636 vs. Swiss-Prot (Human)
Match: ZN330 (Zinc finger protein 330 OS=Homo sapiens GN=ZNF330 PE=1 SV=1) HSP 1 Score: 331.257 bits (848), Expect = 2.208e-110 Identity = 150/217 (69.12%), Postives = 176/217 (81.11%), Query Frame = 3 Query: 225 IQSGSKTISITKYPCNFIMECDKCGRMQKNRAYCYFCYYIQKLPVCGQCGKQKCMMKSGDCVVKHAGVHTTGMQMVGAICDFCEAWICHGRKCLQSHACVCPLTDAICLECDRGVEGQGGRIFVCAFCDKFLCEDDQFEHQAKCQIIESETLKCASCNKNGQHSCLRCKVCYCDDHVWRKGFKYTKGQLPPCPKCGFEMKETKNLSMSTRQHDYGRQ 875 +++ TI + K+PCN MECDKC R QKNRA+CYFC +QKLP+C QCGK KCMMKS DCV+KHAGV++TG+ MVGAICDFCEAW+CHGRKCL +HAC CPLTDA C+EC+RGV GGRIF C+FC FLCEDDQFEHQA CQ++E+ET KC SCN+ GQHSCLRCK C+CDDH K FK KG+ PPCPKCG E +ETK+LSMSTR +GRQ Sbjct: 22 LRASRSTIDLAKHPCNASMECDKCQRRQKNRAFCYFCNSVQKLPICAQCGKTKCMMKSSDCVIKHAGVYSTGLAMVGAICDFCEAWVCHGRKCLSTHACACPLTDAECVECERGVWDHGGRIFSCSFCHNFLCEDDQFEHQASCQVLEAETFKCVSCNRLGQHSCLRCKACFCDDHTRSKVFKQEKGKQPPCPKCGHETQETKDLSMSTRSLKFGRQ 238 The following BLAST results are available for this feature:
BLAST of TCONS_00063636 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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