TCONS_00063633 (transcript) - C. hemisphaerica

Overview
NameTCONS_00063633
Unique NameTCONS_00063633
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length510

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00063633 ID=TCONS_00063633|Name=TCONS_00063633|organism=Clytia hemisphaerica|type=transcript|length=510bp
ATTATTATATTGAAGAATAAATAAGAcagaaaaatgaagattgaaatttt
gattttgttgatgttGCTATGAGGAAATATCGACAgtgatgttttgtttt
tgaagaatatgaGTGATGGCTGTGTGTTGTGAGAAATTGGAAAGAATCAA
CGAGCGAAGATAAATGATGTATCCCAGGTTAAGAGCTTAAAGCGATCTAT
TTTGCTTGTTTAACCAAGCAAAGTCAAAGACGTACAAATACAGATTCCTT
AGCTATGTATACACATGGAAAGGGGGAGGATTTTTCATGTTTGAATATGA
ACAAGTTTCTCGTGAAATAACTTATTGATTAAAAGGGTTAACACTATCTC
GCGAGAATTTTCACTttgatttaggaccattgtttGAATAACTGCTTAAG
ACTTTAACTGGTGATTTTGTTGTAAAATTGAGAGACGCTAATGGCTATGC
TAATTTCTAATGTTTACTTTGTTTTCATGTCAGTGTTGACAAGACGATTT
TTTGTTTTGG
Run BLAST on NCBI

transcript from alignment at scaffold_397:51291..51800+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00063633 ID=TCONS_00063633|Name=TCONS_00063633|organism=Clytia hemisphaerica|type=transcript|length=510bp|location=Sequence derived from alignment at scaffold_397:51291..51800+ (Clytia hemisphaerica)
ATTATTATATTGAAGAATAAATAAGAcagaaaaatgaagattgaaatttt
gattttgttgatgttGCTATGAGGAAATATCGACAgtgatgttttgtttt
tgaagaatatgaGTGATGGCTGTGTGTTGTGAGAAATTGGAAAGAATCAA
CGAGCGAAGATAAATGATGTATCCCAGGTTAAGAGCTTAAAGCGATCTAT
TTTGCTTGTTTAACCAAGCAAAGTCAAAGACGTACAAATACAGATTCCTT
AGCTATGTATACACATGGAAAGGGGGAGGATTTTTCATGTTTGAATATGA
ACAAGTTTCTCGTGAAATAACTTATTGATTAAAAGGGTTAACACTATCTC
GCGAGAATTTTCACTttgatttaggaccattgtttGAATAACTGCTTAAG
ACTTTAACTGGTGATTTTGTTGTAAAATTGAGAGACGCTAATGGCTATGC
TAATTTCTAATGTTTACTTTGTTTTCATGTCAGTGTTGACAAGACGATTT
TTTGTTTTGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039886XLOC_039886Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063633-exon-scaffold_397-1491911889:51291..51800TCONS_00063633-exon-scaffold_397-1491911889:51291..51800Clytia hemisphaericaexon
TCONS_00063633-exon-scaffold_397-1510915933:51291..51800TCONS_00063633-exon-scaffold_397-1510915933:51291..51800Clytia hemisphaericaexon
TCONS_00063633-exon-scaffold_397-1575043694:51291..51800TCONS_00063633-exon-scaffold_397-1575043694:51291..51800Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_397supercontigscaffold_397:51291..51800 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	1.58949	1.13043	0.454607	0.709329	1.38458	0.615142	0	2.57389	0.235167	0	0.450296	0	0.0884818	0.362764	0.570922	0.393335	0.683759	0.50027	0.135143	0.122865	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00063633 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top