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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00063630 ID=TCONS_00063630|Name=TCONS_00063630|organism=Clytia hemisphaerica|type=transcript|length=1129bp
CCATATTATAACTACAAATACGTAGATGACAAAATAGTAGACATAAacat
ttataaacaaaaacacaGCCACTTGGCAACGGtagtaaaatttagaaaaa
gtgaAAGTTTTGTTCGATAAACTTGTGGTGATTAAAAAGGTTAAGGTTGG
AGATGACTTTACTCCTAAATATATGAGAAAAGAATATATTACAACTTTTT
CAGGCAGtCTTTGACATCATCAGACACCAGCTCCTCATCGACCtcatcat
caccatcatcagTGAGTGAACCACCACGCAACGATATGACCGTCATTGGA
TCTTCCTACCACTATTCATTCGGGGTACCAATCCATACTGGTCCTGACTC
CATTAGGCCGTACCGACGCACACGACTCGACGCCACATACACGGGGTTCT
CTAAATCACAAACAAATGTTGGTTCCTTAGATACAGGTCACGTGACACAT
GATTCCCCGATTAACCCGTTTCCTAGAAGACGCTCCGATCGGGTTGGTGG
TATCGGATGGGGATTGAGTAAGCCGGGCGCCTATGATGCGGGACTGTTAA
AAAGCGGACATCAGATTCAACGAAAACACTTCCGTGACCAGAAAGAGAAT
GAGTTATCTCGGAGGCCACCTTTTCCTTAATTATGGACCTAAATTGGTTT
ATGTGGCACGTATGTAAGTCCGTGATGAACACCTACTCAGCTGCAGTTGG
AGATTTTTTTTGAGGAAATAATTCAAGACTTTGGGCTAAAGGCTTTACTG
TGGAGTGTGGAGAAATTTTGTACTTAGATGATTGATaaaggccttttcat
aaattacgtcacttgcctcgtattcatacaattaccatggtgatcatatc
ccttgagacaATAAATGATTtctgaataggaagtagttttaataaaatcc
gctggaagTTAATCTAACCTTGGCAATaacttcaaaacgaggcaagtgat
gttcttgacgtaatttatgaaaaggtctaatATTGATAGAGGTAGAatgt
atttgtattttttgtgtatTAAAGATTCTATTTCTACAGCAAATGCATGC
AACTCGACAATTATTCCCGTAtaaaaagtggacaaaaaatTGTTCccgtt
tgaaaaaatatccGGAATTTCAACTCATC Run BLAST on NCBI transcript from alignment at scaffold_397:2557..5018+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00063630 ID=TCONS_00063630|Name=TCONS_00063630|organism=Clytia hemisphaerica|type=transcript|length=2462bp|location=Sequence derived from alignment at scaffold_397:2557..5018+ (Clytia hemisphaerica)
CCATATTATAACTACAAATACGTAGATGACAAAATAGTAGACATAAacat
ttataaacaaaaacacaGCCACTTGGCAACGGtagtaaaatttagaaaaa
gtgaAAGTTTTGTTCGATAAACTTGTGGTGATTAAAAAGGTTAAGGTTGG
AGATGACTTTACTCCTAAATATATGAGAAAAGAATATATTACAACTTTTT
CAGGCAGGTAAGGTattgtgattttttattttgaaaaaactgttttgaat
ttttaagatCAGACAATCGATCCAAACGAAccgaattttgaataaatata
tTACCCAAATCTTGTTCCATagggcgagaccaatttgattagttgtttta
cgggcccgactgaccctgaaattccaaagatcgaaataaaaatgaaattg
ctTTTGGTAGTatgcttttattttcatttctttataaagactttcaaatt
ctttaatttaaactaaaatttggtagtttttccaaggttttgagattttt
atgttcaatttttcattataTCCTtgaattcgagctttttgtgttatttt
attttctatttcgcatttttgtcaagatgtagtagtttttgctgcctttt
taggagattttgtAGGTGAAANtatttttattttctatttcgcatttttg
tcgagatgtagtagtttttgctccctttttaggagattttttaggtaaat
ttctacttttatttttattttttcaccgaccgaccaaccctctatttttg
gtagcttggcccgtaaaacaacaaattaaattgaccTCGCCTAATAAAGG
AATCAATCAAAGCAGCTAATCCATATATTAAATCCACatattaaatattt
ttgtgaaaactttGGTGATTTCGATTTTAAATAagtatttcaaatttatt
ttcttttgatcaaaTGTTACATTCCTCTAAATATATCGAGAACGGCTGAA
AAAGAGTGAATTTAAGCGAAGTACTACTGCACTATAAAATatgagataat
tttaaattgaaaatatttgtaaTGGTAAAGCAATCGTTTCATCTATTTTC
AGAACAGAAAGTCATACAtttaaaaatcaacattttgttCGATGTTCTCG
TTTCAAAGTAATAAATCTTTTTCGATAGTTTTTACTTGAACGTTGAATCT
actcttgtgtgcttaattgtagggggggtggaataagcaaGGGGTGGGTA
CTCCAGATAAAAATCAACATAATTAAGTGCTATTGAcctgattttcctaa
aaatccctagaaaaattaaggtttttggccaattttggcactttgtAGCA
TAAAGgccataaaatgggggggggggggNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNcccccccccccccctac
aatCAAGCACACAAGAgtacaactttttttttggttttagtCTTTGACAT
CATCAGACACCAGCTCCTCATCGACCtcatcatcaccatcatcagTGAGT
GAACCACCACGCAACGATATGACCGTCATTGGATCTTCCTACCACTATTC
ATTCGGGGTACCAATCCATACTGGTCCTGACTCCATTAGGCCGTACCGAC
GCACACGACTCGACGCCACATACACGGGGTTCTCTAAATCACAAACAAAT
GTTGGTTCCTTAGATACAGGTCACGTGACACATGATTCCCCGATTAACCC
GTTTCCTAGAAGACGCTCCGATCGGGTTGGTGGTATCGGATGGGGATTGA
GTAAGCCGGGCGCCTATGATGCGGGACTGTTAAAAAGCGGACATCAGATT
CAACGAAAACACTTCCGTGACCAGAAAGAGAATGAGTTATCTCGGAGGCC
ACCTTTTCCTTAATTATGGACCTAAATTGGTTTATGTGGCACGTATGTAA
GTCCGTGATGAACACCTACTCAGCTGCAGTTGGAGATTTTTTTTGAGGAA
ATAATTCAAGACTTTGGGCTAAAGGCTTTACTGTGGAGTGTGGAGAAATT
TTGTACTTAGATGATTGATaaaggccttttcataaattacgtcacttgcc
tcgtattcatacaattaccatggtgatcatatcccttgagacaATAAATG
ATTtctgaataggaagtagttttaataaaatccgctggaagTTAATCTAA
CCTTGGCAATaacttcaaaacgaggcaagtgatgttcttgacgtaattta
tgaaaaggtctaatATTGATAGAGGTAGAatgtatttgtattttttgtgt
atTAAAGATTCTATTTCTACAGCAAATGCATGCAACTCGACAATTATTCC
CGTAtaaaaagtggacaaaaaatTGTTCccgtttgaaaaaatatccGGAA
TTTCAACTCATC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00063630-exon-scaffold_397-1491911889:2557..2763 | TCONS_00063630-exon-scaffold_397-1491911889:2557..2763 | Clytia hemisphaerica | exon |
| TCONS_00063630-exon-scaffold_397-1510915933:2557..2763 | TCONS_00063630-exon-scaffold_397-1510915933:2557..2763 | Clytia hemisphaerica | exon |
| TCONS_00063630-exon-scaffold_397-1575043694:2557..2763 | TCONS_00063630-exon-scaffold_397-1575043694:2557..2763 | Clytia hemisphaerica | exon |
| TCONS_00063630-exon-scaffold_397-1491911889:4097..5018 | TCONS_00063630-exon-scaffold_397-1491911889:4097..5018 | Clytia hemisphaerica | exon |
| TCONS_00063630-exon-scaffold_397-1510915933:4097..5018 | TCONS_00063630-exon-scaffold_397-1510915933:4097..5018 | Clytia hemisphaerica | exon |
| TCONS_00063630-exon-scaffold_397-1575043694:4097..5018 | TCONS_00063630-exon-scaffold_397-1575043694:4097..5018 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_397 | supercontig | scaffold_397:2557..5018 + |
Blast
The following BLAST results are available for this feature:
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