TCONS_00063623 (transcript) - C. hemisphaerica

Overview
NameTCONS_00063623
Unique NameTCONS_00063623
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length708

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00063623 ID=TCONS_00063623|Name=TCONS_00063623|organism=Clytia hemisphaerica|type=transcript|length=708bp
AAGAGTAGAAAGCGTAACTCGGACGTTCTTATCATCGGATGCGATTGCAA
CTCAAGTTTGGGAACTTCTTATCGAGACAGTGAATCTATGTATAAAAACT
CAATTGGGAAGTTCGGTTTAACACACAGAAATCTCTCGGGAATACGTTTC
ATGACCTTCTTAGAATCTCGTAACCTTCTTGCGTTATCTACCTACTACCG
TAAGAAATCATATACAACATGGACCAACCCGCGTTCGAAGCTTCCTCATC
AAATAGACCATGTGTTAATTCAAAAAGACAGTTCAAAACGTTTTACAGAC
TGTGGAGTTTTTACACCTCTTGTCGATAGTGACCACAAAGCAGTCATTTG
CAAAATAGGATTGATTTCACGCTTTAAAATCCAGTCATCCATCCGGCAAA
GTATGATCCGACTTAATAACAACTCGCTTCTCGATCAACAGATTGCTAAA
CACTTTGCTCAGACTGTAGTACAGAATTACGACAACACAGCTGATGGTCC
CACCTACTGTAAATTTGCCTCAGCTATTGAAAAAACTGCTTTTGAGAATC
TTCCCAAATCATCTCGTCCACAGCCAGACTGGTTTGAAGCTGATGAGGAG
AACCTTTTCAGTTTGATTGACAAGCGTAACCGTCTCTTGAAAGCACACAT
CAATCGTTCTACCCGATCGTCATCACAAAAACTCCGTACTGCTAGAAAAG
AGTTGACT
Run BLAST on NCBI

protein sequence of TCONS_00063623-protein

>TCONS_00063623-protein ID=TCONS_00063623-protein|Name=TCONS_00063623-protein|organism=Clytia hemisphaerica|type=polypeptide|length=236bp
KSRKRNSDVLIIGCDCNSSLGTSYRDSESMYKNSIGKFGLTHRNLSGIRF
MTFLESRNLLALSTYYRKKSYTTWTNPRSKLPHQIDHVLIQKDSSKRFTD
CGVFTPLVDSDHKAVICKIGLISRFKIQSSIRQSMIRLNNNSLLDQQIAK
HFAQTVVQNYDNTADGPTYCKFASAIEKTAFENLPKSSRPQPDWFEADEE
NLFSLIDKRNRLLKAHINRSTRSSSQKLRTARKELT
Run BLAST on NCBI

transcript from alignment at scaffold_396:58395..59102

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00063623 ID=TCONS_00063623|Name=TCONS_00063623|organism=Clytia hemisphaerica|type=transcript|length=708bp|location=Sequence derived from alignment at scaffold_396:58395..59102 (Clytia hemisphaerica)
AGTCAACTCTTTTCTAGCAGTACGGAGTTTTTGTGATGACGATCGGGTAG AACGATTGATGTGTGCTTTCAAGAGACGGTTACGCTTGTCAATCAAACTG AAAAGGTTCTCCTCATCAGCTTCAAACCAGTCTGGCTGTGGACGAGATGA TTTGGGAAGATTCTCAAAAGCAGTTTTTTCAATAGCTGAGGCAAATTTAC AGTAGGTGGGACCATCAGCTGTGTTGTCGTAATTCTGTACTACAGTCTGA GCAAAGTGTTTAGCAATCTGTTGATCGAGAAGCGAGTTGTTATTAAGTCG GATCATACTTTGCCGGATGGATGACTGGATTTTAAAGCGTGAAATCAATC CTATTTTGCAAATGACTGCTTTGTGGTCACTATCGACAAGAGGTGTAAAA ACTCCACAGTCTGTAAAACGTTTTGAACTGTCTTTTTGAATTAACACATG GTCTATTTGATGAGGAAGCTTCGAACGCGGGTTGGTCCATGTTGTATATG ATTTCTTACGGTAGTAGGTAGATAACGCAAGAAGGTTACGAGATTCTAAG AAGGTCATGAAACGTATTCCCGAGAGATTTCTGTGTGTTAAACCGAACTT CCCAATTGAGTTTTTATACATAGATTCACTGTCTCGATAAGAAGTTCCCA AACTTGAGTTGCAATCGCATCCGATGATAAGAACGTCCGAGTTACGCTTT CTACTCTT

Coding sequence (CDS) from alignment at scaffold_396:58395..59102

>TCONS_00063623 ID=TCONS_00063623|Name=TCONS_00063623|organism=Clytia hemisphaerica|type=CDS|length=708bp|location=Sequence derived from alignment at scaffold_396:58395..59102 (Clytia hemisphaerica)
AGTCAACTCTTTTCTAGCAGTACGGAGTTTTTGTGATGACGATCGGGTAG
AACGATTGATGTGTGCTTTCAAGAGACGGTTACGCTTGTCAATCAAACTG
AAAAGGTTCTCCTCATCAGCTTCAAACCAGTCTGGCTGTGGACGAGATGA
TTTGGGAAGATTCTCAAAAGCAGTTTTTTCAATAGCTGAGGCAAATTTAC
AGTAGGTGGGACCATCAGCTGTGTTGTCGTAATTCTGTACTACAGTCTGA
GCAAAGTGTTTAGCAATCTGTTGATCGAGAAGCGAGTTGTTATTAAGTCG
GATCATACTTTGCCGGATGGATGACTGGATTTTAAAGCGTGAAATCAATC
CTATTTTGCAAATGACTGCTTTGTGGTCACTATCGACAAGAGGTGTAAAA
ACTCCACAGTCTGTAAAACGTTTTGAACTGTCTTTTTGAATTAACACATG
GTCTATTTGATGAGGAAGCTTCGAACGCGGGTTGGTCCATGTTGTATATG
ATTTCTTACGGTAGTAGGTAGATAACGCAAGAAGGTTACGAGATTCTAAG
AAGGTCATGAAACGTATTCCCGAGAGATTTCTGTGTGTTAAACCGAACTT
CCCAATTGAGTTTTTATACATAGATTCACTGTCTCGATAAGAAGTTCCCA
AACTTGAGTTGCAATCGCATCCGATGATAAGAACGTCCGAGTTACGCTTT
CTACTCTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039879XLOC_039879Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063623-exon-scaffold_396-1491911889:58395..59102TCONS_00063623-exon-scaffold_396-1491911889:58395..59102Clytia hemisphaericaexon
TCONS_00063623-exon-scaffold_396-1510915933:58395..59102TCONS_00063623-exon-scaffold_396-1510915933:58395..59102Clytia hemisphaericaexon
TCONS_00063623-exon-scaffold_396-1575043694:58395..59102TCONS_00063623-exon-scaffold_396-1575043694:58395..59102Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063623-proteinTCONS_00063623-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_396supercontigscaffold_396:58395..59102 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.809373 0.748476 0.725021 0.907702 0.880024 0.833415 0.616931 1.03609 0.224744 0.979583 0.921268 0.791176 0.767079 0.962359 0.716282 0.531116 0.250272 0.452632 0.226735 0.789044 0.10994 0.131378 0.291223 0.264888 1.89848 1.53271 0.097489 0 0 0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR005135Endo/exonuclease/phosphatase
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00063623 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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