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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00063623 ID=TCONS_00063623|Name=TCONS_00063623|organism=Clytia hemisphaerica|type=transcript|length=708bp
AAGAGTAGAAAGCGTAACTCGGACGTTCTTATCATCGGATGCGATTGCAA
CTCAAGTTTGGGAACTTCTTATCGAGACAGTGAATCTATGTATAAAAACT
CAATTGGGAAGTTCGGTTTAACACACAGAAATCTCTCGGGAATACGTTTC
ATGACCTTCTTAGAATCTCGTAACCTTCTTGCGTTATCTACCTACTACCG
TAAGAAATCATATACAACATGGACCAACCCGCGTTCGAAGCTTCCTCATC
AAATAGACCATGTGTTAATTCAAAAAGACAGTTCAAAACGTTTTACAGAC
TGTGGAGTTTTTACACCTCTTGTCGATAGTGACCACAAAGCAGTCATTTG
CAAAATAGGATTGATTTCACGCTTTAAAATCCAGTCATCCATCCGGCAAA
GTATGATCCGACTTAATAACAACTCGCTTCTCGATCAACAGATTGCTAAA
CACTTTGCTCAGACTGTAGTACAGAATTACGACAACACAGCTGATGGTCC
CACCTACTGTAAATTTGCCTCAGCTATTGAAAAAACTGCTTTTGAGAATC
TTCCCAAATCATCTCGTCCACAGCCAGACTGGTTTGAAGCTGATGAGGAG
AACCTTTTCAGTTTGATTGACAAGCGTAACCGTCTCTTGAAAGCACACAT
CAATCGTTCTACCCGATCGTCATCACAAAAACTCCGTACTGCTAGAAAAG
AGTTGACT Run BLAST on NCBI protein sequence of TCONS_00063623-protein >TCONS_00063623-protein ID=TCONS_00063623-protein|Name=TCONS_00063623-protein|organism=Clytia hemisphaerica|type=polypeptide|length=236bp
KSRKRNSDVLIIGCDCNSSLGTSYRDSESMYKNSIGKFGLTHRNLSGIRF
MTFLESRNLLALSTYYRKKSYTTWTNPRSKLPHQIDHVLIQKDSSKRFTD
CGVFTPLVDSDHKAVICKIGLISRFKIQSSIRQSMIRLNNNSLLDQQIAK
HFAQTVVQNYDNTADGPTYCKFASAIEKTAFENLPKSSRPQPDWFEADEE
NLFSLIDKRNRLLKAHINRSTRSSSQKLRTARKELT Run BLAST on NCBI transcript from alignment at scaffold_396:58395..59102 Legend: exonCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00063623 ID=TCONS_00063623|Name=TCONS_00063623|organism=Clytia hemisphaerica|type=transcript|length=708bp|location=Sequence derived from alignment at scaffold_396:58395..59102 (Clytia hemisphaerica)
AGTCAACTCTTTTCTAGCAGTACGGAGTTTTTGTGATGACGATCGGGTAG
AACGATTGATGTGTGCTTTCAAGAGACGGTTACGCTTGTCAATCAAACTG
AAAAGGTTCTCCTCATCAGCTTCAAACCAGTCTGGCTGTGGACGAGATGA
TTTGGGAAGATTCTCAAAAGCAGTTTTTTCAATAGCTGAGGCAAATTTAC
AGTAGGTGGGACCATCAGCTGTGTTGTCGTAATTCTGTACTACAGTCTGA
GCAAAGTGTTTAGCAATCTGTTGATCGAGAAGCGAGTTGTTATTAAGTCG
GATCATACTTTGCCGGATGGATGACTGGATTTTAAAGCGTGAAATCAATC
CTATTTTGCAAATGACTGCTTTGTGGTCACTATCGACAAGAGGTGTAAAA
ACTCCACAGTCTGTAAAACGTTTTGAACTGTCTTTTTGAATTAACACATG
GTCTATTTGATGAGGAAGCTTCGAACGCGGGTTGGTCCATGTTGTATATG
ATTTCTTACGGTAGTAGGTAGATAACGCAAGAAGGTTACGAGATTCTAAG
AAGGTCATGAAACGTATTCCCGAGAGATTTCTGTGTGTTAAACCGAACTT
CCCAATTGAGTTTTTATACATAGATTCACTGTCTCGATAAGAAGTTCCCA
AACTTGAGTTGCAATCGCATCCGATGATAAGAACGTCCGAGTTACGCTTT
CTACTCTT Coding sequence (CDS) from alignment at scaffold_396:58395..59102 >TCONS_00063623 ID=TCONS_00063623|Name=TCONS_00063623|organism=Clytia hemisphaerica|type=CDS|length=708bp|location=Sequence derived from alignment at scaffold_396:58395..59102 (Clytia hemisphaerica)
AGTCAACTCTTTTCTAGCAGTACGGAGTTTTTGTGATGACGATCGGGTAG
AACGATTGATGTGTGCTTTCAAGAGACGGTTACGCTTGTCAATCAAACTG
AAAAGGTTCTCCTCATCAGCTTCAAACCAGTCTGGCTGTGGACGAGATGA
TTTGGGAAGATTCTCAAAAGCAGTTTTTTCAATAGCTGAGGCAAATTTAC
AGTAGGTGGGACCATCAGCTGTGTTGTCGTAATTCTGTACTACAGTCTGA
GCAAAGTGTTTAGCAATCTGTTGATCGAGAAGCGAGTTGTTATTAAGTCG
GATCATACTTTGCCGGATGGATGACTGGATTTTAAAGCGTGAAATCAATC
CTATTTTGCAAATGACTGCTTTGTGGTCACTATCGACAAGAGGTGTAAAA
ACTCCACAGTCTGTAAAACGTTTTGAACTGTCTTTTTGAATTAACACATG
GTCTATTTGATGAGGAAGCTTCGAACGCGGGTTGGTCCATGTTGTATATG
ATTTCTTACGGTAGTAGGTAGATAACGCAAGAAGGTTACGAGATTCTAAG
AAGGTCATGAAACGTATTCCCGAGAGATTTCTGTGTGTTAAACCGAACTT
CCCAATTGAGTTTTTATACATAGATTCACTGTCTCGATAAGAAGTTCCCA
AACTTGAGTTGCAATCGCATCCGATGATAAGAACGTCCGAGTTACGCTTT
CTACTCTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00063623-exon-scaffold_396-1491911889:58395..59102 | TCONS_00063623-exon-scaffold_396-1491911889:58395..59102 | Clytia hemisphaerica | exon |
| TCONS_00063623-exon-scaffold_396-1510915933:58395..59102 | TCONS_00063623-exon-scaffold_396-1510915933:58395..59102 | Clytia hemisphaerica | exon |
| TCONS_00063623-exon-scaffold_396-1575043694:58395..59102 | TCONS_00063623-exon-scaffold_396-1575043694:58395..59102 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_396 | supercontig | scaffold_396:58395..59102 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR005135 | Endo/exonuclease/phosphatase |
Blast
The following BLAST results are available for this feature:
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