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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00063615 ID=TCONS_00063615|Name=TCONS_00063615|organism=Clytia hemisphaerica|type=transcript|length=4054bp
CTTCTAGAACATTGTCTCAGGAGCAAATTCTTCAATACCGCCAACATctg
gaatttctcaaaagtcAGGAAGCTGAGGTTCTTGAATCCATTAGGGTAGA
CCAAGAGAAGTTATTAAATGAAGAGGAGTCGCTCAGACAAGAAATACGAc
ggcaaacagaaaagttggATCGCTTGAAAGCCTCAAGAAGCCATGCCGCT
CGTTCCGCCTTTCCGCCCGAACCTCAAAGCAACCACTCAGGGGGAAACCG
TTCCGCCATTTTTAATCGTTCCCGACCCGACCTCTCCTTTCCtcgcaaca
acaacaacaatcatCTCGTTCTTCGTTCAATTTTGCTGGTTCTGCTGCTG
CTCCATTGTTGAATTTTGGTTTGTCAAACTCACATTCCCAAGAATCATCT
TTAATTAATCGTCATATCTCGCAAAGTGAACTGTTTTTTCGTCCGACCCG
TGCAAATGATGTTACTAGAGGTAAAGCATTACGAATTATAGACTTTGTTT
CCCGAATTCGTCCAGCTGAAGATGAGAAAATCCTCTCTTACGATAATAAC
TGTAAACTTGCTCTGATCTTACAGGACACAAAACCTAAGCTTAATAGTGT
CACTATGGAACAGTTTAACATTGCCAATCTTAGAATTTTTTACGAATTAT
TATTTTCTGGGAAGCTCTCCACCCTTCTTCATGTGCAGGAATACCTCTCC
TATGCGATTAAGGTCTTGGAACTGGCGACTAAGTATACATGGCAATCCGT
GCTGCACTACGATGATGAGTTTCGTATCTTGAAGCATACTTATGGATTCT
CATGGAGTACTGACCACAGTCACCTATATGAGGTTGTTCTCATACCTCGC
TGGGCTGCGAAGCTACCTCGTGGGCTTGGGCAAAGCACTGATACTTCCTC
ATCCAAAAGTGATTCTTCTTTGTTTGGTCTTGCGGGTAACAATAAGGGTT
TTGGTCCTGCCATTATGACACACCTCTCTTCTGGATCAGAAATTTGTAGA
ATGTTTAATTCCAGGAAAGGATGTCAGAAGTCCCCCTGCAGGTTTGCACA
TGCCTGTAACCGTAAGGTTGGCTCACAGGCTTGTGGGAAATCTCACCAGG
GTTTCCTACATCCTGTGGGCGAGGGTGACCCTCAATGACTCCTTTCCATA
GAGCCTTCTCCATCTCCGCTTGACTCTGCTATTTGGGACAAGGAGTTACT
GAATGACCCTGACCGTCAGTTTTTATTTGATGGGGTGGTTAACGGTTTTC
AATTGCTCCCAGCAGATGCAAAAATTAGCCCTGCGGAAATGGAGAATTAT
AACTCTGCAGTTGGCCCTGGTTCTAAAGAAAAAGTTGAAGCCACTATTTT
GGAAGAACTGTCGGCCGGAAATTATATTGTTACTTCTGAAAAGCCTGTTA
TTGTCAGTGCCCTTGGAGCAGTTCCAAAGCCTGATTCAGAGGATCTCCGT
TTGATCCATGACTGTTCTATGCCCCACGGTTTGGGCGTCAATTCTTACAT
AGATATTGAGAAGCAATCTTTTCAGACTCTAAATGATGCCTGTAGGCTGA
TAGGGAAAGGTTTCTTCATCGCTAAGATAGATTTGAGACACGCGTACAGA
TCTGTCTCAGTCCACCCAGCCAACCGAGATGCTCTCGGGTTGAAGTGGAA
ATTTAGTGGGGACAAACACTACACGTATCTAAAAGACACACGTCTCCCCT
TTGGCGCACGTAGTGCACCAGGAATTTTTCACCGTTTGACTCAGAGTGTA
AGGCGTATGATGCAGAGAAGAGGCTTTCCTTTGATCATAGTATATCTTGA
CGATTTCTTGATCATTGGTAGGTCTCAGCATGAATGCCAGGCTGCTTTTG
TTGCACTCANTTGTTTGACTCAGAGTGTAAGGCATATGATGCAGAGAAGA
GGCTTTCCTTTGATCATAGTATATCTTGACGATTTCTTGATCATTGGTAG
GTCTCAGCATGAATGCCAGGCTGCTTTTGTTGCACTCAGCTCCCTGCTAG
TTTCTCTAGGATTCACAATCAGCCCTTCCAAGGTTGTTCCACCATGTCAA
AAATTAGTGTTTCTAGGGGTTGAGATTGATACCACAACATTGACTCTCTC
ACTCCCTGATAAGAAGCTAGGTGATCTGAAAGATGTCTTAATGTCTTTTC
AATCCCGAACTCGTGCCTCAAAGAGACAGCTCCAGCAGCTTGCCGGGCGT
CTCAACTGGGCCTGTAAAGTCATTTATGGTGGAAGAACCTTTCTACGTCG
CATTTTGGACCTTATGGGCTCCTTACAAAAACAGTCATCCAAGTGTCTGT
TGAGTGAGGAGTTCTTTAAAGATATTTCTTGGTGGTTGGACTTTCTTGAT
ATTTTTAATGGCCAGTGTTCATTCCATGACACTAGGCCTGTTACTAACAT
CCACACAGATGCCTGTTCTTCAGGTATTGGTGCAGTGTTTGGAAATGACT
GGTTCTACTCTAACTTGTGGGTTGATGCGCCTGCCTTGGCAGGTTTGCAC
ATCAACTACAAAGAGGCTCTTTGCATTGTGTTTGCCTTAGAACGTTGGGC
TCCTTTTCTCAGTAATAAGGTAGTCCATATCTATTGCGACAACACTGCTG
CAGTGGGCATGTTGAATAAGGGATCATCTCGCAACCCACTCATGATGACT
TACCTCAGGCGTCTGTTCTGGTGCTCTGCCACATACAACTTTCGCCTCAA
AGTTTACCATGTTCCGGGGGTCCTGAATGTTGTTGCTGATCATGTCTCTC
GATTGCATGAACACAAACATCTTGCAGCTTTTCTTGAGTATCTTTGTGAC
AATTTTGATCTGTTTGATCCTTCTGATGACATTGCCTGGCACATGTCTGA
GAACTGTTTCTTTTTCCTTCTTGGTTTATATGGGTCTGGCTCATGCCTTC
GCTCTGCCTTTTAGAGTTTGCGTCCTCGCTACTGGCAGAAGTGCAGTTAT
ATCGTGAAGCCACCTATGCTGTCAATACCCGCAAGGCCTACCGTACTCAC
CGTAAGGTCTATCTCCAGTTTTGCAATATGCTTGATATTCCGCCTGCTCC
TGTTCAATGTTCTCACCTCTGTATGTATGCTGCCTATTTGGCGCGGTTCC
TGTTGCCGCAGTCTGTTTGTATTTATTTGAATTTTGTTGGTCTTCTTCAC
CGGGAAATGGGTTTCCCCAACCCTCTCCTTGACAACTGGTTCCTGTCCTC
TGTGCTCAAGGGTATTAAGCGTTCTAAGGGTGTCCCACCTGTCCCCAAGC
TTCCCATCACCGTGGATATCCTCTCCTTCATTCATTCCCAACTCAACCTC
CTGGATAGCAAGCAGGCTTCTTTTTGGGCATTGTGTCTTGTTTCCTTTTT
TGGTCTTTTCCGGAAGAGCCACCTTTTGCCCGTTTCCCAGAGGGACTTTT
CACCGAGCACCTTTCTCACTAGGTCTGATTTTTCATTTGTTGGTTCTGGG
GTTCATATCAGAGTGAGGTGGAGTAAAACCATCCAGTTTGGTCAGCGTAC
TGTTACCATACCACTGGTGGCCATACCCTCTTCTCATCTCTGTCCAGTTT
TGGCTGTGTCTCGTGCTTTTTCCCTCACCCCAGGGGCCCTACCTTGTGAT
CAAGCCTTTTGTTGGAGGGATTCCCACCTTGCATCCAATCGGGTTTTTGT
GTACCGGGATTTCATGTGCATTCTCCAGGCTCACCTCTCTCGGTCTGGGC
TCTCTCCTCGTCAATATGGGTCACACTCATTCAGACGTGGTGGGGCCACT
TTTGCGTTGGAGGCCGGGGTTCCACTTGACTCCATTGCAGTCATGGGTGA
TTGGAAGTCTGATGCAATGTACCTTTATTTACATATGCCCTTGTCCCAGC
GCCTGCACGCCCAGCATTCAATTTCTTCATATATTTCGTCTCTACCTAAC
TAACTACCACACATTGGATTTGGACATTTATTTTATATTCTAGTTTTTAT
TCCTGTACATATTTGCCATGTCACTGTCTTCatttcaagaactgaaaata
ccatgtagaATATACTGTGTGCCTTCCTGCCTAGTCCCCCCTTTCGACCA
CTTG Run BLAST on NCBI transcript from alignment at scaffold_396:145376..149429- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00063615 ID=TCONS_00063615|Name=TCONS_00063615|organism=Clytia hemisphaerica|type=transcript|length=4054bp|location=Sequence derived from alignment at scaffold_396:145376..149429- (Clytia hemisphaerica)
CTTCTAGAACATTGTCTCAGGAGCAAATTCTTCAATACCGCCAACATCTG
GAATTTCTCAAAAGTCAGGAAGCTGAGGTTCTTGAATCCATTAGGGTAGA
CCAAGAGAAGTTATTAAATGAAGAGGAGTCGCTCAGACAAGAAATACGAC
GGCAAACAGAAAAGTTGGATCGCTTGAAAGCCTCAAGAAGCCATGCCGCT
CGTTCCGCCTTTCCGCCCGAACCTCAAAGCAACCACTCAGGGGGAAACCG
TTCCGCCATTTTTAATCGTTCCCGACCCGACCTCTCCTTTCCTCGCAACA
ACAACAACAATCATCTCGTTCTTCGTTCAATTTTGCTGGTTCTGCTGCTG
CTCCATTGTTGAATTTTGGTTTGTCAAACTCACATTCCCAAGAATCATCT
TTAATTAATCGTCATATCTCGCAAAGTGAACTGTTTTTTCGTCCGACCCG
TGCAAATGATGTTACTAGAGGTAAAGCATTACGAATTATAGACTTTGTTT
CCCGAATTCGTCCAGCTGAAGATGAGAAAATCCTCTCTTACGATAATAAC
TGTAAACTTGCTCTGATCTTACAGGACACAAAACCTAAGCTTAATAGTGT
CACTATGGAACAGTTTAACATTGCCAATCTTAGAATTTTTTACGAATTAT
TATTTTCTGGGAAGCTCTCCACCCTTCTTCATGTGCAGGAATACCTCTCC
TATGCGATTAAGGTCTTGGAACTGGCGACTAAGTATACATGGCAATCCGT
GCTGCACTACGATGATGAGTTTCGTATCTTGAAGCATACTTATGGATTCT
CATGGAGTACTGACCACAGTCACCTATATGAGGTTGTTCTCATACCTCGC
TGGGCTGCGAAGCTACCTCGTGGGCTTGGGCAAAGCACTGATACTTCCTC
ATCCAAAAGTGATTCTTCTTTGTTTGGTCTTGCGGGTAACAATAAGGGTT
TTGGTCCTGCCATTATGACACACCTCTCTTCTGGATCAGAAATTTGTAGA
ATGTTTAATTCCAGGAAAGGATGTCAGAAGTCCCCCTGCAGGTTTGCACA
TGCCTGTAACCGTAAGGTTGGCTCACAGGCTTGTGGGAAATCTCACCAGG
GTTTCCTACATCCTGTGGGCGAGGGTGACCCTCAATGACTCCTTTCCATA
GAGCCTTCTCCATCTCCGCTTGACTCTGCTATTTGGGACAAGGAGTTACT
GAATGACCCTGACCGTCAGTTTTTATTTGATGGGGTGGTTAACGGTTTTC
AATTGCTCCCAGCAGATGCAAAAATTAGCCCTGCGGAAATGGAGAATTAT
AACTCTGCAGTTGGCCCTGGTTCTAAAGAAAAAGTTGAAGCCACTATTTT
GGAAGAACTGTCGGCCGGAAATTATATTGTTACTTCTGAAAAGCCTGTTA
TTGTCAGTGCCCTTGGAGCAGTTCCAAAGCCTGATTCAGAGGATCTCCGT
TTGATCCATGACTGTTCTATGCCCCACGGTTTGGGCGTCAATTCTTACAT
AGATATTGAGAAGCAATCTTTTCAGACTCTAAATGATGCCTGTAGGCTGA
TAGGGAAAGGTTTCTTCATCGCTAAGATAGATTTGAGACACGCGTACAGA
TCTGTCTCAGTCCACCCAGCCAACCGAGATGCTCTCGGGTTGAAGTGGAA
ATTTAGTGGGGACAAACACTACACGTATCTAAAAGACACACGTCTCCCCT
TTGGCGCACGTAGTGCACCAGGAATTTTTCACCGTTTGACTCAGAGTGTA
AGGCGTATGATGCAGAGAAGAGGCTTTCCTTTGATCATAGTATATCTTGA
CGATTTCTTGATCATTGGTAGGTCTCAGCATGAATGCCAGGCTGCTTTTG
TTGCACTCANTTGTTTGACTCAGAGTGTAAGGCATATGATGCAGAGAAGA
GGCTTTCCTTTGATCATAGTATATCTTGACGATTTCTTGATCATTGGTAG
GTCTCAGCATGAATGCCAGGCTGCTTTTGTTGCACTCAGCTCCCTGCTAG
TTTCTCTAGGATTCACAATCAGCCCTTCCAAGGTTGTTCCACCATGTCAA
AAATTAGTGTTTCTAGGGGTTGAGATTGATACCACAACATTGACTCTCTC
ACTCCCTGATAAGAAGCTAGGTGATCTGAAAGATGTCTTAATGTCTTTTC
AATCCCGAACTCGTGCCTCAAAGAGACAGCTCCAGCAGCTTGCCGGGCGT
CTCAACTGGGCCTGTAAAGTCATTTATGGTGGAAGAACCTTTCTACGTCG
CATTTTGGACCTTATGGGCTCCTTACAAAAACAGTCATCCAAGTGTCTGT
TGAGTGAGGAGTTCTTTAAAGATATTTCTTGGTGGTTGGACTTTCTTGAT
ATTTTTAATGGCCAGTGTTCATTCCATGACACTAGGCCTGTTACTAACAT
CCACACAGATGCCTGTTCTTCAGGTATTGGTGCAGTGTTTGGAAATGACT
GGTTCTACTCTAACTTGTGGGTTGATGCGCCTGCCTTGGCAGGTTTGCAC
ATCAACTACAAAGAGGCTCTTTGCATTGTGTTTGCCTTAGAACGTTGGGC
TCCTTTTCTCAGTAATAAGGTAGTCCATATCTATTGCGACAACACTGCTG
CAGTGGGCATGTTGAATAAGGGATCATCTCGCAACCCACTCATGATGACT
TACCTCAGGCGTCTGTTCTGGTGCTCTGCCACATACAACTTTCGCCTCAA
AGTTTACCATGTTCCGGGGGTCCTGAATGTTGTTGCTGATCATGTCTCTC
GATTGCATGAACACAAACATCTTGCAGCTTTTCTTGAGTATCTTTGTGAC
AATTTTGATCTGTTTGATCCTTCTGATGACATTGCCTGGCACATGTCTGA
GAACTGTTTCTTTTTCCTTCTTGGTTTATATGGGTCTGGCTCATGCCTTC
GCTCTGCCTTTTAGAGTTTGCGTCCTCGCTACTGGCAGAAGTGCAGTTAT
ATCGTGAAGCCACCTATGCTGTCAATACCCGCAAGGCCTACCGTACTCAC
CGTAAGGTCTATCTCCAGTTTTGCAATATGCTTGATATTCCGCCTGCTCC
TGTTCAATGTTCTCACCTCTGTATGTATGCTGCCTATTTGGCGCGGTTCC
TGTTGCCGCAGTCTGTTTGTATTTATTTGAATTTTGTTGGTCTTCTTCAC
CGGGAAATGGGTTTCCCCAACCCTCTCCTTGACAACTGGTTCCTGTCCTC
TGTGCTCAAGGGTATTAAGCGTTCTAAGGGTGTCCCACCTGTCCCCAAGC
TTCCCATCACCGTGGATATCCTCTCCTTCATTCATTCCCAACTCAACCTC
CTGGATAGCAAGCAGGCTTCTTTTTGGGCATTGTGTCTTGTTTCCTTTTT
TGGTCTTTTCCGGAAGAGCCACCTTTTGCCCGTTTCCCAGAGGGACTTTT
CACCGAGCACCTTTCTCACTAGGTCTGATTTTTCATTTGTTGGTTCTGGG
GTTCATATCAGAGTGAGGTGGAGTAAAACCATCCAGTTTGGTCAGCGTAC
TGTTACCATACCACTGGTGGCCATACCCTCTTCTCATCTCTGTCCAGTTT
TGGCTGTGTCTCGTGCTTTTTCCCTCACCCCAGGGGCCCTACCTTGTGAT
CAAGCCTTTTGTTGGAGGGATTCCCACCTTGCATCCAATCGGGTTTTTGT
GTACCGGGATTTCATGTGCATTCTCCAGGCTCACCTCTCTCGGTCTGGGC
TCTCTCCTCGTCAATATGGGTCACACTCATTCAGACGTGGTGGGGCCACT
TTTGCGTTGGAGGCCGGGGTTCCACTTGACTCCATTGCAGTCATGGGTGA
TTGGAAGTCTGATGCAATGTACCTTTATTTACATATGCCCTTGTCCCAGC
GCCTGCACGCCCAGCATTCAATTTCTTCATATATTTCGTCTCTACCTAAC
TAACTACCACACATTGGATTTGGACATTTATTTTATATTCTAGTTTTTAT
TCCTGTACATATTTGCCATGTCACTGTCTTCATTTCAAGAACTGAAAATA
CCATGTAGAATATACTGTGTGCCTTCCTGCCTAGTCCCCCCTTTCGACCA
CTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00063615-exon-scaffold_396-1575043694:145376..149429 | TCONS_00063615-exon-scaffold_396-1575043694:145376..149429 | Clytia hemisphaerica | exon |
| TCONS_00063615-exon-scaffold_396-1510915933:145376..149429 | TCONS_00063615-exon-scaffold_396-1510915933:145376..149429 | Clytia hemisphaerica | exon |
| TCONS_00063615-exon-scaffold_396-1491911889:145376..149429 | TCONS_00063615-exon-scaffold_396-1491911889:145376..149429 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_396 | supercontig | scaffold_396:145376..149429 - |
Blast
The following BLAST results are available for this feature:
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