TCONS_00063610 (transcript) - C. hemisphaerica

Overview
NameTCONS_00063610
Unique NameTCONS_00063610
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length642

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00063610 ID=TCONS_00063610|Name=TCONS_00063610|organism=Clytia hemisphaerica|type=transcript|length=642bp
AGAAAGGGTGTGTAGGTGTAATCTGGCTCGAAAGAGCCATCATTTCTTTA
CATGAActccttttttataaaaacttattacaaaaatgattttgattttt
agtaaaTCATGCAACAAGATGCTTCATTGACCTTTCACCGAAAGACACCT
TCGAACGAATCGTTAATGAACCTGACAGAAATATCCTCATGGTTAAAATA
GGAGCAATTGAGGTGAAAGACGTCCCTTGGTAAAGGGAAACTTAAGGACA
ATTTTATACAAGGCTTCATTCCGCATTTACTGAGCATTTATGATGGCGAA
AGTAAAGTTGGTTCAATTGATTGGACCGTGTTGGGTCAAGCCTTGTCGTT
TCCATCCACCTATGAATTGCCGGATAGTGTCAAGAATGCTCTTCGTGAAA
AAGAAACTGTCTTCGGCATCTACAACACAAACGATCATTGGAATCTATTA
CTTATATTTCCAAAAAAGCAAAAGCAGCTTTGGTTGGCAAACCCAACCAG
TGAAGGAACAATGGAAACAGAAAATGTCGTCAGGACATGGGAATCGGTAA
TGGCTTCAAACTTTAACGAATACACTTCTTGGACAATGTATTCACAGCAA
CATGCGGTTCAAGAGGATGCTGTCTCGTGTGGTGTTTTCTGT
Run BLAST on NCBI

transcript from alignment at scaffold_396:54287..67672-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00063610 ID=TCONS_00063610|Name=TCONS_00063610|organism=Clytia hemisphaerica|type=transcript|length=13386bp|location=Sequence derived from alignment at scaffold_396:54287..67672- (Clytia hemisphaerica)
AGAAAGGGTGTGTAGGTGTAATCTGGCTCGAAAGAGCCATCATTTCTTTA
CATGAACTCCTTTTTTATAAAAACTTATTACAAAAATGATTTTGATTTTT
AGTAAATCATGCAACAAGATGCTTCATTGACCTTTCACCGAAAGACAGTA
AGTGCGATATTTGGTTTAGGTAATAGAGTATAATGCTTAGGATAGGGTTG
GGATCATACTCTTACAGGAAACATGGTGATAGACACTCTACTTTCACTGA
TAAACAGTTCTGCCTGTTATATTGAGGGTTAAACTGTAATATTTTATCTT
GAAAACTCTATTATATCGCATCCGATTTCACATGATAGTTGTTGCGATCC
TTGAAAGATTACGTGGATCATAATTGATCATTTTGAAAGCAGACGGGGCG
ATAGTTATTCAATTTACAGTAAATATTAATAGAGTAATTCCTAGCAACGT
CAATTTTACCCACGATCAGAAATTCTTTATAAAATTGCACGAAGAATATG
TATACGAGTCACACCTTCCTCCAGGCTGTGTGTTATCACCCTCGACTCCA
TGGCTTATCTAACCCCCTTACGCTATTGATGATTCTGATGGACGCGTTGA
CGGGGGATATAAGCCCTGGTGCACTTTAAAAACGNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATCCCGCCATTTT
ACAAATTCCGAGAATTTGAAAAAATCAAAACAAGATAAATATGTAATGAA
TGGCTGATGTAAATAGTAAATTCAAAAGTCAAAGACAGATTCTCAACATG
AAGAAGTTGAAGTATGAAGAACTCTTGGCAAACCAATCACACAAAATTGC
AAAATGTCATTTAAATGAAACTTGATTGGCAGAGAAAGATACTACGAGAC
CTTGATAAGCAGTCTATCCCTGCACTGAGCGAACTGGAACTGCTTGTNNN
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NNNNNNNNNNNNNNNCATAGGACCAGTAAATATTTCTAACTTTTTTTGTT
AATCGAATAAAACGAAATGTTCCAAGTTTATTAAAGTTTCATGTAAAATG
TATTCCTGCAGACTTATTACGCCATGTTTTTATTATCAAAACCCTGAGTT
GAAAATCGGTGAATGAAAAAAGTACGTACTCACCAGGGGGTATAGCTATT
TGCATCTGCTTGCCTATCGGGGGAGGGGTATATATATTTTAGTGGGTACG
TACTATATGGACGGCGCCTAAGTAACAACAAAGTTCTATTTGAAACACTA
ATTTTTTAGCATAAAAGAACCACTTTATTCTGTGCTATTTGCCCAAATTA
GTTTTTGCCAAAATTAAAAATTGGATTTCTCTTCAAAACCACATTTATAA
AAAATTCTATTTTATTTAGCTCCTTGCCNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNTCGAAAAATATCAAGATTCTTGATATTTTCTCTTCTAAAGTACC
AGGGCCCTAAACGATTCCTCCAATTATACGGTACTGGCCTCTTTAAGTCG
CAGAATCGTTTCGGCCCTGGCTCGCGAGGGTGGTGTGTTATTCCTGTTTT
CTTAAACAGAGTAATACATAACTAAAGCAAAAATCGTCTTTGCGTGTATT
GCTTACTTTAAGGTATATCTTTAAGGTTAAATTTTTTTTCTTAGAATCTT
ATTTAGTTCCTGATATATTAATCGCCTCATTATATTTTAATTTGCAATTT
AGTAGAAAAAAGAGAAAATTGTAGCAACTTTTCGGCTTTTTTGATGTTTC
ATTGAATAACTTGGGAATTGACCAATTAGAAAAATAATCCTGAGAACTTT
TTTTAGACCAACCTTCTCTGAATCATATAAAAAATAATCATCTCGATAGC
TCAAAGCTATGGGCGACTTTAGGTATTTTGAATGTAACTAGGTCTTTTAA
TAATTACTCTTGTTCAGCATACTAAATAAGATTTTAATGAACATTTAGGG
AATTCTATGGGCTATCAGAAAATGCCTAGTACATCAGGATGCCTGGTGTC
TAGTGCAGTCGGCTCCAAAGGAGTCTAAGGTGTTTACACCTTTGTTGATT
CATGTTTTGTTTTCTTCTCCTGTCAGTCTACCTAGAGTTTGTTGTCATCT
TGTACAGGCCGCCGGGGTAATGTCGCCTGACTGTCTTAAATGATAGTCCA
AAGCCAGGATAAAGACAGAGGGACCCAGAAAGGACTAATTACCCTTTCAT
TGTAACATCGTCTCTCTAAGAGGAAAAAGAATTCGGCCACTCTTTGTTGT
TTGAAGTTCTTACAGGAGAAAACATTTTAATTTTTCATACTATATATATT
ATATATATGCATATTTTTCATACTATATATAATATAGTGAAGATATGTAA
TATCTGTCATTTTAGAAAAAGAAAAGTATTGATATATAAATAACTCAAAC
TGATAAAAACGAAAAAAAAGTTAAGAATATTTTTGTTAATTGTGTATATT
TACGATTTTTTTGTTATTTTTAATTTTTTAATAATTCCGAAACAGAGGGT
AATTTAGCAAAAAGTTAAAGGGAATTTAAATAGTGGTATGTGAAAGAAAA
ACCTAATCCAAATGAAGATAGAAGAAAAGTAATAGTGGANNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNATTCTTTAGGGTAAATCTGTTTGT
AGCAATTATGAAACTCATCTCTGTCATTTAAGGCACACAAATCATCAATA
AATCTACCTACAGAGTGGAAGTTATTGGCACTAGGCGAACTAGCAGAAAT
GAGACCTTTGACATACTCAGATTCAAAATGGTACAAAAACAGATTTGCCC
AAAAAGGAGCAATGCACTGTTTAAGAATAGAATTGCCAACTTTGAAAAAG
CAATTTTTTATCAGAAAGGACACACACTCAGACAGTGAAGTATATGCATA
TGCATTTTTGCTTTTGAGATACTTCCGAAGAATACACCATTGTCCCATTT
CTTTTTTCTGCTCCATCAGAATTATGTACAAATAGTTTAGATCTTTTGTC
ATCATTTGATATCACATACCTGGTTTCCATTTTATGAATATTCATCCTGA
GCATGTTGTGTTGTTGTGTCCTCTTGTTGGTATTGTTTCGTCTCTTTTTG
TTTGTTACATTTTTTGAATAGTTGAAGGTTCAATACTTCTTTGACTATAT
ATATCGGTATATTTCTCGTATCAGCCTATTCACCTATTGGAGTGAATATT
TTAATAAACTGGCTATCATTAAGAGTAGAAAGCGTAACTCGGACGTTCTT
ATCATCGGATGCGATTGCAACTCAAGTTTGGGAACTTCTTATCGAGACAG
TGAATCTATGTATAAAAACTCAATTGGGAAGTTCGGTTTAACACACAGAA
ATCTCTCGGGAATACGTTTCATGACCTTCTTAGAATCTCGTAACCTTCTT
GCGTTATCTACCTACTACCGTAAGAAATCATATACAACATGGACCAACCC
GCGTTCGAAGCTTCCTCATCAAATAGACCATGTGTTAATTCAAAAAGACA
GTTCAAAACGTTTTACAGACTGTGGAGTTTTTACACCTCTTGTCGATAGT
GACCACAAAGCAGTCATTTGCAAAATAGGATTGATTTCACGCTTTAAAAT
CCAGTCATCCATCCGGCAAAGTATGATCCGACTTAATAACAACTCGCTTC
TCGATCAACAGATTGCTAAACACTTTGCTCAGACTGTAGTACAGAATTAC
GACAACACAGCTGATGGTCCCACCTACTGTAAATTTGCCTCAGCTATTGA
AAAAACTGCTTTTGAGAATCTTCCCAAATCATCTCGTCCACAGCCAGACT
GGTTTGAAGCTGATGAGGAGAACCTTTTCAGTTTGATTGACAAGCGTAAC
CGTCTCTTGAAAGCACACATCAATCGTTCTACCCGATCGTCATCACAAAA
ACTCCGTACTGCTAGAAAAGAGTTGACTTAAGCAATCTCACGAGAAAAGG
AGAACTGGATCTTACTGAAACTTAACTTTTTGAATTCGACAGCTGCGTCT
GTTAAAGGAACTAAACTATGCTGGGATTCAATAAAATCACTTAAGAACGG
TTTCCAGAAACCCGCCCCAGTCCAAGAGAAAATTATGACAAAACCGAACG
GAACAAAATGTACAACATCTGAAGAAAATGCCGAAGTATTTAAAAATCAC
TTCGAAAAATTGTACAACAATCAAGCTGCCTTCAATCCTGAAGTATTAAC
GTTTCTCGACCAGTGCCCTATATTGACGCAATGCGAGCAACGTCCAACAG
ATATCGATATCAAAAAAGCTTTACATCGTCTCAAAAACAAAGCCCCTGGT
GACTCTGGAATCACACCACTCATGCTAAAATTTTGTATCCACAACCAGCA
ATGTTTCGTTTTACTTCGCGACATCATTCTTGAGGTTTGGGACAATGAAT
CTCCACCCGAATCCTGGGATACCGGTCTGCTGAAAATTTTGCCAAAAAAA
AGGAGACCTTAGTCTACCCGGCAACTATCGTGGCATCATGCTTTTGGAAG
TTGCTTACAAAATCCTTGCCATACTTATCCATGATCGTTTACCGCCACTT
GTTGAATGAATATCTAGACCATGAAGCACAATGTGGCTTCCGCTCAGGAA
GGGGTTGTTTAGACTCTATTTTTGCTGTGAATATGGCTATGAAAAAGCGT
AGAGAACATAGTAAAGAAACATTGATTTTGTTCCTCGACTTAGTAATTCG
ACTGATAAAATCAGTTCATGATAATTTCAAAGTAGATTTTGAAATAGAAA
ATTGCAAGCATTCAATCAACTGCACCATCGGAGTTAAACAAGGGGACATT
CTTGGGCCTGTACTCTTCGTTGTTTACATAGCGGCTATAATGATCACCTG
GCGTAAACTGCACGATCGACCTCTTTGTATGTTCAGAACCAAGAAGGATT
TCTGTACGACAGGGAGACGAGTTACTGCCTCCGGAATCGATTTCGACTTC
CCTGACTCAAAGTACGCAGATGATACAGCCGTGTTGTTCGAATCCCGCAT
CGATCTCGTCACCTTCATTCCTCTGCTGCTTGACCATTTCAATCGCTTCG
GAATGGAAGTTCATGTTAGTGATATATCTTTACCCAATAACCATCAAAAA
CTGAAATATTGTTTGTTTCTGCTTCGGTCAAATCGTATCACGATTCTAAT
ACGTTTGACAATACGAATCTAACATCAATCGACTTGGGAGATGGGAAATT
TATACCCGTAACCGACCGTTTTTGCTATCTTGGTAGAATCATGTCACGCG
ATTGTACAGACAATCTTGATATTACAAACCGTATCAAAAGAGCTAGCAAT
GCTTTTGGCGCTCTAAGAAAATCGATTTTCTCCAATGCAAATGTCTCCAA
TAAAGTCAAGGCATCTGTTTACGAAAGCTTAGTGCTTCCGATTGCTCTTT
ACGGATCAGAATCATGGTCTCTTACAGAGAAATTATTCAATCTTTTACGT
ATGTTCCATCGTAATTGTCTCAGAGCAATGTGTAGAGTTAATCTGTTACA
TGTCAGGCGATATAGAATCTCAAATGAGAGTTGTTGAATCGTATTGGCTT
GTTGTCTGTTGATAGTTACATCACGAAAAGGCAGCTTTCATGGGCAGGGC
ATGTTGCTAGAATGAATTTTGATCGTCTTCCACAGAAAATATTATCGTCA
TGGGTAAGGTGTAACCGCCCAAGTGGTTCACCTGAATTTACTTATGGCCG
TGGTTTGAAAAAGTGTATGAATAAGGCTAATGTGCCTGTAATTAATTGGT
TTGATTTGGCGCAAGATAGAATTGGCTGGAAAAGANTGCCTGTAATTAAT
TGGTTTTATTTGGCACAAGATAGAATTGACTGGAATAGAATGGTGAATGG
TATTGTTGTAATATGATTTTATCTTGGTTGTTTTACTAATCTAATATTTA
TTATGCTACTAGTACTTTTCTTCCTTTGGCTAGCGCTATATATGATTTCC
CAGCGCTATGATTTCCAAATTTAAATTCCCGCCAAGAAAATCTTTTAGCT
GATTCGCGAAAATCGATTCCCACGAGACACAGTTTTCAGATCTTAGAGGT
GACTTTTTGGTTATTAGAACATAAAAACATGCTTTTAGCTTAGTGTTTTT
GTCTGGGAAAATCAAATTTCGCGAAAATTAATTCCCGCGAAATGAATTAG
TCTTGCTGATTTGGGAAATTAAATTCCATCAAAACACGCGAAAATTCGCG
AATGACCTGATTCGCGAAATTTTTTAGACGCGAAATTTTCTGACATTAAA
GTATTTGAATACTTGGTAATTTTTCTCTTGGTTTCACTATTTAGCCTTCG
AACGAATCGTTAATGAACCTGACAGAAATATCCTCATGGTTAAAATAGGA
GCAATTGAGGTGAAAGACGTCCCTTGGTAAAGGGAAACTTAAGGACAATT
TTATACAAGGCTTCATTCCGCATTTACTGAGCATTTATGATGTAAGTTTT
TGATATCTACTCATAAATATTTAGTAATGATTGAATCCAATGTTGCCAGT
ACTGTTGTCATAAGCTCCAAAGCCACGATCCAGTATACATAGAACAGTAT
ACATTTCGTATTCACAGGGCGAAAGTAAAGTTGGTTCAATTGATTGGACC
GTGTTGGGTCAAGCCTTGTCGTTTCCATCCACCTATGAATTGCCGGATAG
TGTCAAGGTACGTTNGACCGTGTTGGGTCAAGCCTTTTCGTTTCCATCCA
CCTATGAATTGCCGGATAGTGTCAAGGTACGTTGACTTTTAAAAGTAATT
CCTCAACTTCCTCAATTCCTCAAAATTTTATGTTCTCAATTGCAAAGGGA
TTGTTAATGGATTCTCTCTTACTGATGTAAACCCACCCATATACAAAAGG
TTGATTGATTTACATTATGAAAATATGTTTTTATGTGAAAATAGGAATTA
ATTAATTAATTAAAACAAAATTATATTTTCTACCATAGCTGAAGGGGGGT
AGCTTTTTTATAGGACACTTTGTGTCAAAAGAATGCAAAACGGAGCAGCT
TCTAATAAATAATTTTCATCCATATATTTTCAGAATGCTCTTCGTGAAAA
AGAAACTGTCTTCGGCATCTACAACACAAACGATCATTGGAATCTATTAG
TAAGAATGAGATAAAACTAAAATTTATGGTGATGAAACTTTGGAGCTAAA
TGTTAACAATTTGTTCCAATTAGAAGTTATTCTTTCAAAATCTCTATCTT
TATCTTTGTAGCTTATATTTCCAAAAAAGCAAAAGCAGCTTTGGTTGGCA
AACCCAACCAGTGAAGGAACAATGGAAACAGAAAATGTCGTCAGGACATG
GGAGTAGGTTTCGTTTGTTAACCCTTCGTGCATCTTCTTATTTTTTATAT
GCGGAGCATCTTGAGGGGCATGTTAGCCCCCCCCCCCCCCGGGCTCNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNGCCCCCCCCCCCCTCGGATCTCAGGATTGACAA
GTGCTATGAACTTGAAATTTTCACCAATGACAGATATTGACAAAAGACGA
TTTACAAATTTTCAGGTCGGCCCCCTGTTTACTTGGTATTTTACAGACCA
GAATGTTAAGTTAGTGCGATTAATGCGATTGCATCCTTTGGCTGAAAAGA
TTACGTCATAAAAAGTAGCGCGCACATGAAAAGAAGTTGAATGCTTTTCA
ACCGTTGCGTCAAGTTGTGCCATTGGAAAAGCTTCATTTTACTTTTGACC
AATAGCGTGGAAGCTTTTGTTGAAAAGAAGCGATCGTAGAGCGCGCAAAT
GAAGAAAATCTTTGATAGGAGTTATTTTGAAAATTGTACCCTGAGTACTA
CTAAAAACAAAACCGTTTCACTGTAAAGATTGAGACTTACTTATTATTTG
CTACGTGTTGGTAATAGAGAGTTACTTTTTCTTCAGATCGGTAATGGCTT
CAAACTTTAACGAATACACTTCTTGGACAATGTATTCACAGCAACATGCG
GTTCAAGAGGATGCTGTCTCGTGTGGTGTTTTCTGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039869XLOC_039869Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063610-exon-scaffold_396-1575043694:67526..67672TCONS_00063610-exon-scaffold_396-1575043694:67526..67672Clytia hemisphaericaexon
TCONS_00063610-exon-scaffold_396-1575043694:55882..56028TCONS_00063610-exon-scaffold_396-1575043694:55882..56028Clytia hemisphaericaexon
TCONS_00063610-exon-scaffold_396-1575043694:55666..55755TCONS_00063610-exon-scaffold_396-1575043694:55666..55755Clytia hemisphaericaexon
TCONS_00063610-exon-scaffold_396-1575043694:55224..55289TCONS_00063610-exon-scaffold_396-1575043694:55224..55289Clytia hemisphaericaexon
TCONS_00063610-exon-scaffold_396-1575043694:55020..55111TCONS_00063610-exon-scaffold_396-1575043694:55020..55111Clytia hemisphaericaexon
TCONS_00063610-exon-scaffold_396-1575043694:54287..54386TCONS_00063610-exon-scaffold_396-1575043694:54287..54386Clytia hemisphaericaexon
TCONS_00063610-exon-scaffold_396-1510915933:67526..67672TCONS_00063610-exon-scaffold_396-1510915933:67526..67672Clytia hemisphaericaexon
TCONS_00063610-exon-scaffold_396-1510915933:55882..56028TCONS_00063610-exon-scaffold_396-1510915933:55882..56028Clytia hemisphaericaexon
TCONS_00063610-exon-scaffold_396-1510915933:55666..55755TCONS_00063610-exon-scaffold_396-1510915933:55666..55755Clytia hemisphaericaexon
TCONS_00063610-exon-scaffold_396-1510915933:55224..55289TCONS_00063610-exon-scaffold_396-1510915933:55224..55289Clytia hemisphaericaexon
TCONS_00063610-exon-scaffold_396-1510915933:55020..55111TCONS_00063610-exon-scaffold_396-1510915933:55020..55111Clytia hemisphaericaexon
TCONS_00063610-exon-scaffold_396-1510915933:54287..54386TCONS_00063610-exon-scaffold_396-1510915933:54287..54386Clytia hemisphaericaexon
TCONS_00063610-exon-scaffold_396-1491911889:67526..67672TCONS_00063610-exon-scaffold_396-1491911889:67526..67672Clytia hemisphaericaexon
TCONS_00063610-exon-scaffold_396-1491911889:55882..56028TCONS_00063610-exon-scaffold_396-1491911889:55882..56028Clytia hemisphaericaexon
TCONS_00063610-exon-scaffold_396-1491911889:55666..55755TCONS_00063610-exon-scaffold_396-1491911889:55666..55755Clytia hemisphaericaexon
TCONS_00063610-exon-scaffold_396-1491911889:55224..55289TCONS_00063610-exon-scaffold_396-1491911889:55224..55289Clytia hemisphaericaexon
TCONS_00063610-exon-scaffold_396-1491911889:55020..55111TCONS_00063610-exon-scaffold_396-1491911889:55020..55111Clytia hemisphaericaexon
TCONS_00063610-exon-scaffold_396-1491911889:54287..54386TCONS_00063610-exon-scaffold_396-1491911889:54287..54386Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_396supercontigscaffold_396:54287..67672 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0819347	0	0	0	22.4237	26.3989	30.6195	47.6325	43.2187	34.4212	25.972	32.7449	17.4217	15.1421	0	0.0499287	3.99803	3.78263	0.609689	0.729138	0.0792192	0	0	0.0854094	1.61552	2.98341	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00063610 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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