|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00063605 ID=TCONS_00063605|Name=TCONS_00063605|organism=Clytia hemisphaerica|type=transcript|length=4228bp TATTTCTTGTCCAACATTGCCAATGGGGCAGGGGGGACGGATTTCTAAGG TAAAAATGTTGTTGGTCTCAACATATTTATTGGGAGATTGTCTGAAAAGT TTGGGCCCTGGACTTAGTCTAATTCAGGTTGGGGGAGATTCATGTCCCGA TCAAATGTTTTTTGTTACAGTTTGAGACATTAGAAGTGTTCAGGGGGATG TGATTATTGTGTTTCAACTAGCCAAGGCCAAGTGGCGGTCACTTTGTATG TACGTAAACAATAggggaaaataaataaacaaacaaacaagacGTTCATT ATAATTCCGCTTTGAGTCTGTTGTAATTTCACGTCAATAAGTTATAATAT TCCACGATAAAGTATGTTTCTATTAAGCAAATTCTgatatattttctctt ttctacTTTACAGAAAGAAACAATTACATATAGaaagataataaaaaata acacTGACAATTATGGCCCGATCACGTAAATATGTACCACATGGGGTATC AATCCACTGGCGGCATTTACACCAGGACTGTGGAAAGACGCTGGATGAAA TCAGACTACTGCCACAATACCGTCACCGTTATTCCCGAGCTACAGTGGCG CGCCACATGAAACGACCCATCGGTGAAGAAATTCTAGACAGGCGCACACT TAATAAAGGACGCCCCAGAGCTCTAACCTCAAGGGACGAACGCAGGATCC TACGGATTGCTGAGCAGCTGCGCGAAAGCCAAGGTCACTTCACTATCAAA CGCGTCAAGACTGCAGCCGGTGTACAAAACGTTTGTGATGAGACAGTTCG AAAAGTTTTTCGCAAGGCCGGCTTACGGTACACTCATTCGAGGAAAAAAG GTGTCCTTAAACGAAAAGATCTGCGCGCTCGATTGGAATTTGCTCGAAGA ATCAGACGCCTCGGCCAAGAAGGACAGCTTCAACTCTGGCTGAGAGACAT TGCGTTCTACCTGGACGGTGTTGGTTTTGCTCATAAATACAACCCCTTTG ATCAGGCAAAGGCACCCCGGACCATGGCATGGCGCAGACCACAAGACGGA TTAGATTTTAAACGGACCGCTCGAGGGTCCCACGAAGGTACCGGCGGACG GGTTGCCCACTTCATATGTGCTGTTTCCCACCAAGATGGAATGATTTGCG CTGAACAGTATGAGGGCCGGCTGAATGGCAACAAATTTGCTGATTTCGTG AAAACCACTCTGGACGCATTGTTCACCGGAAGCTCTAACCCGGACGGGAA AATGTTCTTGCAGGATAACTGTCCCACCCAAAATTCAAAACGATCAAGGG AAGCTTTTGTGTCGATTGGCGCAGAAGTGTTCAAGATCCCTCCCAGATCA CCCGATCTTAACCCAATAGAGAACGTATTCAAAGGAGTGAAGGAAGCATT GCGCGACGAGGCTCTGCACCAAAGAATCACCCGTGAAAATTTTGCAGAGT TTTCCGCCCGGTGTAAGCGTACCCTTCTCAACTACAACAAGGATGTCATC CGGCGCACTATAGAGTCAATGCCGCGAAGAATGGAGAGGATTATCAAGCG CAGAGGTCAACGTACAAAGTATTAGTTTTTATTTCCTATCCATTTGTATA TACTTTAGGACTATGTTACAACAATGTTACACTGTCCCTATATCGTCTCT GTCTGTCGGGGGTCAATGTTACAAGTGTTACATTGTGTTACAGTGTTaca agaaagttaaaaaaaagttttgagaataattttattttcttgtaACACTT GTAACACTATGTAACACCTGTAACACAAGCAACTAAGTATGTATTCTGTG ACCCAACCCTCGATAACTCCCTGTAACTCTATTGTAACATTACTCTGGGC TACCTTTGCAGATGCCTATAAACACCAGAcattctaaaattaaaaaataa caatGGTCCTTTTCGTATTCAAATTATGCGTGGTGCAAAACAAACTCAGC AAAACATCTTGGGCAGGGTGGGATACTGTCGTTTACTTCCTCATCCGTCA ACCTCCTGTAGAACTCGAAGTATCTCCACCTGACATCCATCATTCGGTTC TCCCGTGCCTCTGGTGGCTCCTTGTTATTCCTGAGGCGGTACGGTCCAGT GGCAAAAATTGGGGTGTCTTTGTCTATCAACACGTCCTTGGCAAAGTGGT TCTTGGGGGCTGGCAATTTGGTGGGCTCCCCTTCAAGAAGTCTTAGAAAG TCATCCCATGAGATTTGCTCCCCTGGGTGCTTCCAACGAAGGTCGTTAAT CAAAATAACTTCTGCGGCGTCCGCCCCAACCCAACAGTACTTATCACGGG CCGGGTTCTCAAAAGTCTTGTAGATGTGGGTGAGCGGCTTAAGTAGAAAA GTTTTTGCACAGTTTACGTCCCCGTAAAGCATGACGTTTCTGTACTTACC CCTCCCACGTCGAAGCAAAAGTTTTACAGCATCTGCAAAGGTGGCCCAAT CAATGTTGTTGTATTCCAGGATCTGCAAGGCGGATCTTTTCCACAGCTCG TCTTCACATCCTGGAACACAAGGGGAGTTGGACAAATCATACAGCACATG CATCCGGTCACGTGCCCCCCTTTCAATATCCATGTCGACAGAATTTTTCA TCTCCCAAACATTGTCGATCAGGTCTTCCACAAGTTGTTTGCGCCGAGCC AAAATGAAATGATACAAGTCCAGTTTCCCGTCCCTTTTCTGCAGCTCCGC TTGCCTTTGGAGCTCCTTCCGGGTCTTGATCGACTGTTGGATGCAAAAGT CTGCAACCTCGACCAAAGTGAGTCTGTGACATGACTTCTCTCCTTCAGCG CGCGGGTCATGTCCTTCAACGACCATGTCAGCAAAACCTGTATCGTCTGC CCCCAAGGCATCAGCAGCCCTCTCAGCAACACGTTTGCGGCGACGTTTGG CATAGGAGTTCATTGCCGCTCGGGTCCCCGGGGTTCCTACTGGCAGAGTG TGTGGGTGGTTTTCGCTGTGGTAGACATCCCCATCAGCCTTGGTGACATA GGCGTAGGCGGAATCATAACCGTTGTCATTCTGAACAAAGTTTACAACAA CATCATGCCTTTTTGTCAGAAAGTCTTTGACAGCCCCCCAGCGCTGAGTC CCATTCAAAAGCACGCTGACGTGATAGTGGTACCCACTGGTGTTGGGGTG GGGTTCCTTACCGCATGCCCAGTAGAGGGGTTGAACTTTACCCGGAACAG CCCGAAATGCCTCTGCAACCACATCCCCAAATGACTGTCTGGTGGGAAAG CGGCGGAGATCACATTGTGAATATGTGACAAGGTAGGCACGTCTGATGGA ATTTTTCGATAGTTCTTTCAATGTGCTCTCCGTCGTCTCAAACTCAACGC CAGCCATCTTCGTTGCAGGGTTGGTCTGAAAAAAAGGATAGCGCTGATGT TTACATACTTGGTAGTTCCCTCCCCAATGCAACGGGGCCCCTGTTAATAT GTATTATATTGAAGTAGATCTTGTGAATAGTACTTCACTTGCTTTTAAAC TGTACATAGACTTAAAACGAAAGCACCATTTTTAGTGTAaatatttctta gtttttgcAACATACCTTTTGTTATTGATTGATGTTTATAGTCTTTTTAG TCTTTTGTAGTTTGGATTTGCCAAGAAGTCATTCCTTGTGGGTGTCAGAG ACCCAACTAAGAGCATGCATCCCCCTTTTAAAGCATAACATCCAGAGCCA CCCAAGTAAACACCCCCTCCCCTGAATTCCCCACCAACATTTTTCCCGCC ATTTTCTATTTGTTTTGGTGTGGTGTAAAATGCACGAAATATCACGAATT TTCGTCTGAGAGGTTTGGGAAGCAATTAGGCCTGGTGACGAAAGTTATTT TCGCATGTGCTTTGCAAGAGTGAAAGTATTTTCtagatttttcgaaattc aagatggcggccgTTTTGCAGGGAAATCTGAAGTGAAAAAGCTCCCTGTT TGGGTCTGAAATGGGCAGAAGACACCTTTTGGAATGACTGGCTTAGTAAT TTATGATATCTTTGATGTACATAGggacaaaaattttgatttctgaCCAC TGTTATTGTGTTTACAGCTTACTTTCTGGACCTCGGTATGCCCTGTGTCC CCCTGtccctttcatttttttttcttgaaaatcagACAATCCCCCAATAA ATACATGAGACGCGGTCCCCCTTACCCCACTAGCAGTGTTGGGAACTCTA ACGGCCGGTATTTCTTGTCCAACATTNN Run BLAST on NCBI protein sequence of TCONS_00063605-protein >TCONS_00063605-protein ID=TCONS_00063605-protein|Name=TCONS_00063605-protein|organism=Clytia hemisphaerica|type=polypeptide|length=477bp
MAGVEFETTESTLKELSKNSIRRAYLVTYSQCDLRRFPTRQSFGDVVAEA FRAVPGKVQPLYWACGKEPHPNTSGYHYHVSVLLNGTQRWGAVKDFLTKR HDVVVNFVQNDNGYDSAYAYVTKADGDVYHSENHPHTLPVGTPGTRAAMN SYAKRRRKRVAERAADALGADDTGFADMVVEGHDPRAEGEKSCHRLTLVE VADFCIQQSIKTRKELQRQAELQKRDGKLDLYHFILARRKQLVEDLIDNV WEMKNSVDMDIERGARDRMHVLYDLSNSPCVPGCEDELWKRSALQILEYN NIDWATFADAVKLLLRRGRGKYRNVMLYGDVNCAKTFLLKPLTHIYKTFE NPARDKYCWVGADAAEVILINDLRWKHPGEQISWDDFLRLLEGEPTKLPA PKNHFAKDVLIDKDTPIFATGPYRLRNNKEPPEARENRMMDVRWRYFEFY RRLTDEEVNDSIPPCPRCFAEFVLHHA Run BLAST on NCBI transcript from alignment at scaffold_394:177237..181464 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00063605 ID=TCONS_00063605|Name=TCONS_00063605|organism=Clytia hemisphaerica|type=transcript|length=4228bp|location=Sequence derived from alignment at scaffold_394:177237..181464 (Clytia hemisphaerica) NNAATGTTGGACAAGAAATACCGGCCGTTAGAGTTCCCAACACTGCTAGT
GGGGTAAGGGGGACCGCGTCTCATGTATTTATTGGGGGATTGTctgattt
tcaagaaaaaaaaatgaaagggaCAGGGGGACACAGGGCATACCGAGGTC
CAGAAAGTAAGCTGTAAACACAATAACAGTGGtcagaaatcaaaattttt
gtccCTATGTACATCAAAGATATCATAAATTACTAAGCCAGTCATTCCAA
AAGGTGTCTTCTGCCCATTTCAGACCCAAACAGGGAGCTTTTTCACTTCA
GATTTCCCTGCAAAAcggccgccatcttgaatttcgaaaaatctaGAAAA
TACTTTCACTCTTGCAAAGCACATGCGAAAATAACTTTCGTCACCAGGCC
TAATTGCTTCCCAAACCTCTCAGACGAAAATTCGTGATATTTCGTGCATT
TTACACCACACCAAAACAAATAGAAAATGGCGGGAAAAATGTTGGTGGGG
AATTCAGGGGAGGGGGTGTTTACTTGGGTGGCTCTGGATGTTATGCTTTA
AAAGGGGGATGCATGCTCTTAGTTGGGTCTCTGACACCCACAAGGAATGA
CTTCTTGGCAAATCCAAACTACAAAAGACTAAAAAGACTATAAACATCAA
TCAATAACAAAAGGTATGTTgcaaaaactaagaaatattTACACTAAAAA
TGGTGCTTTCGTTTTAAGTCTATGTACAGTTTAAAAGCAAGTGAAGTACT
ATTCACAAGATCTACTTCAATATAATACATATTAACAGGGGCCCCGTTGC
ATTGGGGAGGGAACTACCAAGTATGTAAACATCAGCGCTATCCTTTTTTT
CAGACCAACCCTGCAACGAAGATGGCTGGCGTTGAGTTTGAGACGACGGA
GAGCACATTGAAAGAACTATCGAAAAATTCCATCAGACGTGCCTACCTTG
TCACATATTCACAATGTGATCTCCGCCGCTTTCCCACCAGACAGTCATTT
GGGGATGTGGTTGCAGAGGCATTTCGGGCTGTTCCGGGTAAAGTTCAACC
CCTCTACTGGGCATGCGGTAAGGAACCCCACCCCAACACCAGTGGGTACC
ACTATCACGTCAGCGTGCTTTTGAATGGGACTCAGCGCTGGGGGGCTGTC
AAAGACTTTCTGACAAAAAGGCATGATGTTGTTGTAAACTTTGTTCAGAA
TGACAACGGTTATGATTCCGCCTACGCCTATGTCACCAAGGCTGATGGGG
ATGTCTACCACAGCGAAAACCACCCACACACTCTGCCAGTAGGAACCCCG
GGGACCCGAGCGGCAATGAACTCCTATGCCAAACGTCGCCGCAAACGTGT
TGCTGAGAGGGCTGCTGATGCCTTGGGGGCAGACGATACAGGTTTTGCTG
ACATGGTCGTTGAAGGACATGACCCGCGCGCTGAAGGAGAGAAGTCATGT
CACAGACTCACTTTGGTCGAGGTTGCAGACTTTTGCATCCAACAGTCGAT
CAAGACCCGGAAGGAGCTCCAAAGGCAAGCGGAGCTGCAGAAAAGGGACG
GGAAACTGGACTTGTATCATTTCATTTTGGCTCGGCGCAAACAACTTGTG
GAAGACCTGATCGACAATGTTTGGGAGATGAAAAATTCTGTCGACATGGA
TATTGAAAGGGGGGCACGTGACCGGATGCATGTGCTGTATGATTTGTCCA
ACTCCCCTTGTGTTCCAGGATGTGAAGACGAGCTGTGGAAAAGATCCGCC
TTGCAGATCCTGGAATACAACAACATTGATTGGGCCACCTTTGCAGATGC
TGTAAAACTTTTGCTTCGACGTGGGAGGGGTAAGTACAGAAACGTCATGC
TTTACGGGGACGTAAACTGTGCAAAAACTTTTCTACTTAAGCCGCTCACC
CACATCTACAAGACTTTTGAGAACCCGGCCCGTGATAAGTACTGTTGGGT
TGGGGCGGACGCCGCAGAAGTTATTTTGATTAACGACCTTCGTTGGAAGC
ACCCAGGGGAGCAAATCTCATGGGATGACTTTCTAAGACTTCTTGAAGGG
GAGCCCACCAAATTGCCAGCCCCCAAGAACCACTTTGCCAAGGACGTGTT
GATAGACAAAGACACCCCAATTTTTGCCACTGGACCGTACCGCCTCAGGA
ATAACAAGGAGCCACCAGAGGCACGGGAGAACCGAATGATGGATGTCAGG
TGGAGATACTTCGAGTTCTACAGGAGGTTGACGGATGAGGAAGTAAACGA
CAGTATCCCACCCTGCCCAAGATGTTTTGCTGAGTTTGTTTTGCACCACG
CATAATTTGAATACGAAAAGGACCattgttattttttaattttagaatgT
CTGGTGTTTATAGGCATCTGCAAAGGTAGCCCAGAGTAATGTTACAATAG
AGTTACAGGGAGTTATCGAGGGTTGGGTCACAGAATACATACTTAGTTGC
TTGTGTTACAGGTGTTACATAGTGTTACAAGTGTtacaagaaaataaaat
tattctcaaaacttttttttaactttcttgtAACACTGTAACACAATGTA
ACACTTGTAACATTGACCCCCGACAGACAGAGACGATATAGGGACAGTGT
AACATTGTTGTAACATAGTCCTAAAGTATATACAAATGGATAGGAAATAA
AAACTAATACTTTGTACGTTGACCTCTGCGCTTGATAATCCTCTCCATTC
TTCGCGGCATTGACTCTATAGTGCGCCGGATGACATCCTTGTTGTAGTTG
AGAAGGGTACGCTTACACCGGGCGGAAAACTCTGCAAAATTTTCACGGGT
GATTCTTTGGTGCAGAGCCTCGTCGCGCAATGCTTCCTTCACTCCTTTGA
ATACGTTCTCTATTGGGTTAAGATCGGGTGATCTGGGAGGGATCTTGAAC
ACTTCTGCGCCAATCGACACAAAAGCTTCCCTTGATCGTTTTGAATTTTG
GGTGGGACAGTTATCCTGCAAGAACATTTTCCCGTCCGGGTTAGAGCTTC
CGGTGAACAATGCGTCCAGAGTGGTTTTCACGAAATCAGCAAATTTGTTG
CCATTCAGCCGGCCCTCATACTGTTCAGCGCAAATCATTCCATCTTGGTG
GGAAACAGCACATATGAAGTGGGCAACCCGTCCGCCGGTACCTTCGTGGG
ACCCTCGAGCGGTCCGTTTAAAATCTAATCCGTCTTGTGGTCTGCGCCAT
GCCATGGTCCGGGGTGCCTTTGCCTGATCAAAGGGGTTGTATTTATGAGC
AAAACCAACACCGTCCAGGTAGAACGCAATGTCTCTCAGCCAGAGTTGAA
GCTGTCCTTCTTGGCCGAGGCGTCTGATTCTTCGAGCAAATTCCAATCGA
GCGCGCAGATCTTTTCGTTTAAGGACACCTTTTTTCCTCGAATGAGTGTA
CCGTAAGCCGGCCTTGCGAAAAACTTTTCGAACTGTCTCATCACAAACGT
TTTGTACACCGGCTGCAGTCTTGACGCGTTTGATAGTGAAGTGACCTTGG
CTTTCGCGCAGCTGCTCAGCAATCCGTAGGATCCTGCGTTCGTCCCTTGA
GGTTAGAGCTCTGGGGCGTCCTTTATTAAGTGTGCGCCTGTCTAGAATTT
CTTCACCGATGGGTCGTTTCATGTGGCGCGCCACTGTAGCTCGGGAATAA
CGGTGACGGTATTGTGGCAGTAGTCTGATTTCATCCAGCGTCTTTCCACA
GTCCTGGTGTAAATGCCGCCAGTGGATTGATACCCCATGTGGTACATATT
TACGTGATCGGGCCATAATTGTCAgtgttattttttattatctttCTATA
TGTAATTGTTTCTTTCTGTAAAgtagaaaagagaaaatatatcAGAATTT
GCTTAATAGAAACATACTTTATCGTGGAATATTATAACTTATTGACGTGA
AATTACAACAGACTCAAAGCGGAATTATAATGAACgtcttgtttgtttgt
ttatttattttccccTATTGTTTACGTACATACAAAGTGACCGCCACTTG
GCCTTGGCTAGTTGAAACACAATAATCACATCCCCCTGAACACTTCTAAT
GTCTCAAACTGTAACAAAAAACATTTGATCGGGACATGAATCTCCCCCAA
CCTGAATTAGACTAAGTCCAGGGCCCAAACTTTTCAGACAATCTCCCAAT
AAATATGTTGAGACCAACAACATTTTTACCTTAGAAATCCGTCCCCCCTG
CCCCATTGGCAATGTTGGACAAGAAATA Coding sequence (CDS) from alignment at scaffold_394:177237..181464 >TCONS_00063605 ID=TCONS_00063605|Name=TCONS_00063605|organism=Clytia hemisphaerica|type=CDS|length=1434bp|location=Sequence derived from alignment at scaffold_394:177237..181464 (Clytia hemisphaerica) ATGGCTGGCGTTGAGTTTGAGACGACGGAGAGCACATTGAAAGAACTATC GAAAAATTCCATCAGACGTGCCTACCTTGTCACATATTCACAATGTGATC TCCGCCGCTTTCCCACCAGACAGTCATTTGGGGATGTGGTTGCAGAGGCA TTTCGGGCTGTTCCGGGTAAAGTTCAACCCCTCTACTGGGCATGCGGTAA GGAACCCCACCCCAACACCAGTGGGTACCACTATCACGTCAGCGTGCTTT TGAATGGGACTCAGCGCTGGGGGGCTGTCAAAGACTTTCTGACAAAAAGG CATGATGTTGTTGTAAACTTTGTTCAGAATGACAACGGTTATGATTCCGC CTACGCCTATGTCACCAAGGCTGATGGGGATGTCTACCACAGCGAAAACC ACCCACACACTCTGCCAGTAGGAACCCCGGGGACCCGAGCGGCAATGAAC TCCTATGCCAAACGTCGCCGCAAACGTGTTGCTGAGAGGGCTGCTGATGC CTTGGGGGCAGACGATACAGGTTTTGCTGACATGGTCGTTGAAGGACATG ACCCGCGCGCTGAAGGAGAGAAGTCATGTCACAGACTCACTTTGGTCGAG GTTGCAGACTTTTGCATCCAACAGTCGATCAAGACCCGGAAGGAGCTCCA AAGGCAAGCGGAGCTGCAGAAAAGGGACGGGAAACTGGACTTGTATCATT TCATTTTGGCTCGGCGCAAACAACTTGTGGAAGACCTGATCGACAATGTT TGGGAGATGAAAAATTCTGTCGACATGGATATTGAAAGGGGGGCACGTGA CCGGATGCATGTGCTGTATGATTTGTCCAACTCCCCTTGTGTTCCAGGAT GTGAAGACGAGCTGTGGAAAAGATCCGCCTTGCAGATCCTGGAATACAAC AACATTGATTGGGCCACCTTTGCAGATGCTGTAAAACTTTTGCTTCGACG TGGGAGGGGTAAGTACAGAAACGTCATGCTTTACGGGGACGTAAACTGTG CAAAAACTTTTCTACTTAAGCCGCTCACCCACATCTACAAGACTTTTGAG AACCCGGCCCGTGATAAGTACTGTTGGGTTGGGGCGGACGCCGCAGAAGT TATTTTGATTAACGACCTTCGTTGGAAGCACCCAGGGGAGCAAATCTCAT GGGATGACTTTCTAAGACTTCTTGAAGGGGAGCCCACCAAATTGCCAGCC CCCAAGAACCACTTTGCCAAGGACGTGTTGATAGACAAAGACACCCCAAT TTTTGCCACTGGACCGTACCGCCTCAGGAATAACAAGGAGCCACCAGAGG CACGGGAGAACCGAATGATGGATGTCAGGTGGAGATACTTCGAGTTCTAC AGGAGGTTGACGGATGAGGAAGTAAACGACAGTATCCCACCCTGCCCAAG ATGTTTTGCTGAGTTTGTTTTGCACCACGCATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00063605-exon-scaffold_394-1491911889:177237..181464 | TCONS_00063605-exon-scaffold_394-1491911889:177237..181464 | Clytia hemisphaerica | exon |
TCONS_00063605-exon-scaffold_394-1510915933:177237..181464 | TCONS_00063605-exon-scaffold_394-1510915933:177237..181464 | Clytia hemisphaerica | exon |
TCONS_00063605-exon-scaffold_394-1575043694:177237..181464 | TCONS_00063605-exon-scaffold_394-1575043694:177237..181464 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_394 | supercontig | scaffold_394:177237..181464 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
Term | Definition |
IPR027417 | P-loop_NTPase |
Blast
The following BLAST results are available for this feature:
|