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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00063600 ID=TCONS_00063600|Name=TCONS_00063600|organism=Clytia hemisphaerica|type=transcript|length=2786bp
CTGCCTCAGAAAAAGCTGAAGTGAAAATGAAGGGATGCAACTTTTTTCGA
ACAAGATTGTTGTTCTGTGTGATCGTTGGAAGGATATTACTGAGTTATTG
TAAATAAGATGAAAAATATCGACCCCTATTACACATCAGTGaatcttcaa
tatttattcTGATAAAACATATCGagcaaaattttcaaccagCAATGATT
TTTGCAGATTGTTGTGAGACTTGATTCATTATCTGGAAATATCAAATCAA
TGGAGcactaaaatactaaaaaaacataaaattttatcaatttctATTAC
AAATTCAATATATTCCTTGTACAAGCTAGTATTTATCTTTCAATAGAATA
ATCTATAAATTCATTTAAATAAAGGGTTAAATTTTATAACAATAAGTTTT
TAGAACGATtatactttgaaaaattacagcATACTTACTGTAATATTATT
TTTAACACTAAGACCCTGTTCAGACGCTACGGTTTCGTATCGTTCCAGTA
TGGTTTTCGTTACGGATCAaaagtgttcatattggtttcagaacgttttg
gagcaagaaaacggagcagttccgttccgatgaaaaaatgtggagcgaaa
ccgtttcgatctgttttcctttgacgtcttcttttttgacgtttcgaatt
ttggcgttcacacttgtttcggaaccgtttcgttttggAACAATACGGAA
TCGTAACGTCTGAATATGGTCTAAAGACCACGATAGAATTGGCCTGAATA
TTGTACAATACGAGAAATAATTTTACTAATGTTGAATACAATAATACTCT
AGAACATTATAAAGGTCCTCAAACGCCTAGCCGAAGGTTTGCAATACATT
AAATTCAAATGATAAGAACTTAGATTGTTCTTTTTTGAGAACTGCCACTT
TAACAAGAACCAGAGGCTGCAAGAGGGTCTAACTTACTATAGCGTGCTGA
CGAGGGACAAATTGATTGAATATTTTTGCCAAAGTTTGCCAAAATTGACC
TGAATTTTGCTAAGCTGTGCCCTAAAGCATGTGgttaaaagttacatttt
gaaAAGTACTATtgatttataattgaaaatgaacTTAAAGTTTGATTTTC
GGTTTACAATTTCTattaaataaaagaagaacaagACAAATGCAgaatag
aaaattttgaaagctgaaaaaatatggaaaaattgCTACATAAAAATACA
GTATAAAAGCTCTCCATCAAAACATGCTGTTCACGAATTAGTAAAAATCT
CATTGACAGCTCTCTCAATATTCCATTTACAACGAGTGAGTGTTTTAAAA
CAAACATTCTCAGGTTTACTGGTGATTTCAGCTACGCGAACAATTTTCGC
CATTTCTAAAGCTTTCGTAACATCTTCTTTATTCTCGTTAAAAAGTGATC
TCGCTTTAGGTTCCTCAATTCCAAACCCGCCACATTTCTGTATGAAAATT
GTCTTCAAAGTCAAAGTCACATCCCATTGGCAGAAACTTAAAGTATCCTG
AACTTGGGTACGATCCAGGGATTGAAATTTACCACAAACATGACAAGTCT
TCAGCTCGCATTCTGCTTTCTTAAAATCGAACCCATTCTTCTCCAAAAGT
TTTTCACAATCTTCAAATGAATAACCATAATTGAACCGATATAACTTGAG
GATCTGAATGTATCGAACAGCTCTATTGACATCATTACCAGAGCTTCTCA
AACCTTCCAAGCATTCACCAACTGAAGCATCGGGTAATATAGATCTGATA
GTTTTGAATTTCTCACTAAATTCACCTTTCTGGTCCTCAGTTTCTTCATG
AGTAATGTCGACCAAGCCACCGCTGTTATTCTTAGGCCAACTAATGCGTT
TCCCTTGTGACTTTTTACGGTCCTTATCCACTTTTTTCGAGCCTTTAACA
CAATCTTCAAACAAGTCCCATTGGTTATCGGTAAAATTCGTAGCATTTTG
CCGTAATTTTTCTTTCGCCGAGGGCGGAGAGGGAGTCTGTTTTGGTTTCG
CCTTTGGATCATATGTAAAATGATTCATGGTTTTTTGGTCTGCtaagaag
tttttaaaatagTCTGGTGACTTTTCAGCCGTTAAATTACCCGTTGTGGG
CGGCTGTTGAGGCGGCTGGTGGGACGGGCCTACCAACCTAGTGTTTGCTT
GCTGGGGCGGAAACATATTTTGATTAACTTGGCTAACAGGTATGACACTC
CCAAACCGTTGAAGATATTGAGTGTTTTGCACGGACGGATAATTTTTGAC
GTCGTTCACAGACACATTCAGTGAACTGATACTTTCGGGTAGGTTGTCAC
ATGAAGCTGTCTCACGCCTAGGCCCCAGTTGTTGTGAAAGTAGATCGAAG
TCTTTTCTTATAGATTGTGCGTAAGCGTCTAAGCTAGTTTTACGATAAGC
TGCATTCGTTTCTTGAGGAATTGGTTTCAACATCGCAGCTtggccgccat
ctttgtttacacTTGTTGTTGCTATGGGTTGCAAAGGTGGTGCATCCAGG
TTAACGTAGCTGACCTCTTTGTGTTGATATGCTGGTGATTGATGCTGTTG
GTGTGATTCTAAAAGAACAGACCATTGTTGTCCTGAAATTACATCAATAA
AAACTGTTAGTAAAGAATGAAAAGTGCAGAGAAAAAAAGTCTCGTGTAAC
TACTTCTTCACCAGGTTATCAGAGATTTTTCACTTGAACATCTttatcaa
atctgtgttttttCCAGCGATTCCatattgaaaagataagaaATGGTTGA
ATATGTTCTAAAAGTTTATTTAGAAGAACAGCTGGT Run BLAST on NCBI transcript from alignment at scaffold_394:126630..129922- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00063600 ID=TCONS_00063600|Name=TCONS_00063600|organism=Clytia hemisphaerica|type=transcript|length=3293bp|location=Sequence derived from alignment at scaffold_394:126630..129922- (Clytia hemisphaerica)
CTGCCTCAGAAAAAGCTGAAGTGAAAATGAAGGGATGCAACTTTTTTCGA
ACAAGATTGTTGTTCTGTGTGATCGTTGGAAGGATATTACTGAGTTATTG
TAAATAAGATGAAAAATATCGACCCCTATTACACATCAGTGAATCTTCAA
TATTTATTCTGATAAAACATATCGAGCAAAATTTTCAACCAGCAATGATT
TTTGCAGATTGTTGTGAGACTTGATTCATTATCTGGAAATATCAAATCAA
TGGAGCACTAAAATACTAAAAAAACATAAAATTTTATCAATTTCTATTAC
AAATTCAATATATTCCTTGTACAAGCTAGTATTTATCTTTCAATAGAATA
ATCTATAAATTCATTTAAATAAAGGGTTAAATTTTATAACAATAAGTTTT
TAGAACGATTATACTTTGAAAAATTACAGCATACTTACTGTAATATTATT
TTTAACACTAAGACCCTGTTCAGACGCTACGGTTTCGTATCGTTCCAGTA
TGGTTTTCGTTACGGATCAAAAGTGTTCATATTGGTTTCAGAACGTTTTG
GAGCAAGAAAACGGAGCAGTTCCGTTCCGATGAAAAAATGTGGAGCGAAA
CCGTTTCGATCTGTTTTCCTTTGACGTCTTCTTTTTTGACGTTTCGAATT
TTGGCGTTCACACTTGTTTCGGAACCGTTTCGTTTTGGAACAATACGGAA
TCGTAACGTCTGAATATGGTCTAAAGACCACGATAGAATTGGCCTGAATA
TTGTACAATACGAGAAATAATTTTACTAATGTTGAATACAATAATACTCT
AGAACATTATAAAGGTCCTCAAACGCCTAGCCGAAGGTTTGCAATACATT
AAATTCAAATGATAAGAACTTAGATTGTTCTTTTTTGAGAACTGCCACTT
TAACAAGAACCAGAGGCTGCAAGAGGGTCTAACTTACTATAGCGTGCTGA
CGAGGGACAAATTGATTGAATATTTTTGCCAAAGTTTGCCAAAATTGACC
TGAATTTTGCTAAGCTGTGCCCTAAAGCATGTGGTTAAAAGTTACATTTT
GAAAAGTACTATTGATTTATAATTGAAAATGAACTTAAAGTTTGATTTTC
GGTTTACAATTTCTATTAAATAAAAGAAGAACAAGACAAATGCAGAATAG
AAAATTTTGAAAGCTGAAAAAATATGGAAAAATTGCTACATAAAAATACA
GTATAAAAGCTCTCCATCAAAACATGCTGTTCACGAATTAGTAAAAATCT
CATTGACAGCTCTCTCAATATTCCATTTACAACGAGTGAGTGTTTTAAAA
CAAACATTCTCAGGTTTACTGGTGATTTCAGCTACGCGAACAATTTTCGC
CATTTCTAAAGCTTTCGTAACATCTTCTTTATTCTCGTTAAAAAGTGATC
TCGCTTTAGGTTCCTCAATTCCAAACCCGCCACATTTCTGTATGAAAATT
GTCTTCAAAGTCAAAGTCACATCCCATTGGCAGAAACTTAAAGTATCCTG
AACTTGGGTACGATCCAGGGATTGAAATTTACCACAAACATGACAAGTCT
TCAGCTCGCATTCTGCTTTCTTAAAATCGAACCCATTCTTCTCCAAAAGT
TTTTCACAATCTTCAAATGAATAACCATAATTGAACCGATATAACTTGAG
GATCTGAATGTATCGAACAGCTCTATTGACATCATTACCAGAGCTTCTCA
AACCTTCCAAGCATTCACCAACTGAAGCATCGGGTAATATAGATCTGATA
GTTTTGAATTTCTCACTAAATTCACCTTTCTGGTCCTCAGTTTCTTCATG
AGTAATGTCGACCAAGCCACCGCTGTTATTCTTAGGCCAACTAATGCGTT
TCCCTTGTGACTTTTTACGGTCCTTATCCACTTTTTTCGAGCCTTTAACA
CAATCTTCAAACAAGTCCCATTGGTTATCGGTAAAATTCGTAGCATTTTG
CCGTAATTTTTCTTTCGCCGAGGGCGGAGAGGGAGTCTGTTTTGGTTTCG
CCTTTGGATCATATGTAAAATGATTCATGGTTTTTTGGTCTGCTAAGAAG
TTTTTAAAATAGTCTGGTGACTTTTCAGCCGTTAAATTACCCGTTGTGGG
CGGCTGTTGAGGCGGCTGGTGGGACGGGCCTACCAACCTAGTGTTTGCTT
GCTGGGGCGGAAACATATTTTGATTAACTTGGCTAACAGGTATGACACTC
CCAAACCGTTGAAGATATTGAGTGTTTTGCACGGACGGATAATTTTTGAC
GTCGTTCACAGACACATTCAGTGAACTGATACTTTCGGGTAGGTTGTCAC
ATGAAGCTGTCTCACGCCTAGGCCCCAGTTGTTGTGAAAGTAGATCAAAG
TCTTTTCTANATGAAGCTGTCTCACGCCTAGGCCCCAGTTGTTGTGAAAG
TAGATCGAAGTCTTTTCTTATAGATTGTGCGTAAGCGTCTAAGCTAGTTT
TACGATAAGCTGCATTCGTTTCTTGAGGAATTGGTAGGTTAGCTTTAGGT
CTAGGACGCAAAGTTTGTGTATTTCGACCACTTCGATATTGTTCATTGTC
GATTTCTTCGTACAGATTCTCACAGGATGCTGCCTTGGTACTCGATAATG
GATCAATACTGCTCCAATTTCTATTTTGACGAGCAGAAGTTGGTGGATTA
GAAACGTTGACTGGATTCAACAGTCCTGATTGTAGACTAACATCTTCGCT
TGATAAAGGGTTCGTGAAAGATAAAAATGCTGTCATGTTTTTAGTTATTC
GGTCATTTACTGTGTCTTGGACTTCAGGATTTGTGTCTTTGAATCCGAGG
TTTGAATCAGAGCCAGATTTCAGATTGTTCGTTGTTAGATCGAAGAAATC
TTCTCGCATCGAAACAACCTCAGCTGAATGAGGCCTCGATCTAAATTGTT
GTTTAAGGTCCGTCAAACTTTTATTCTCAGGTTTCAACATCGCAGCTTGG
CCGCCATCTTTGTTTACACTTGTTGTTGCTATGGGTTGCAAAGGTGGTGC
ATCCAGGTTAACGTAGCTGACCTCTTTGTGTTGATATGCTGGTGATTGAT
GCTGTTGGTGTGATTCTAAAAGAACAGACCATTGTTGTCCTGAAATTACA
TCAATAAAAACTGTTAGTAAAGAATGAAAAGTGCAGAGAAAAAAAGTCTC
GTGTAACTACTTCTTCACCAGGTTATCAGAGATTTTTCACTTGAACATCT
TTATCAAATCTGTGTTTTTTCCAGCGATTCCATATTGAAAAGATAAGAAA
TGGTTGAATATGTTCTAAAAGTTTATTTAGAAGAACAGCTGGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00063600-exon-scaffold_394-1575043694:127602..129922 | TCONS_00063600-exon-scaffold_394-1575043694:127602..129922 | Clytia hemisphaerica | exon |
| TCONS_00063600-exon-scaffold_394-1575043694:127440..127541 | TCONS_00063600-exon-scaffold_394-1575043694:127440..127541 | Clytia hemisphaerica | exon |
| TCONS_00063600-exon-scaffold_394-1575043694:126630..126992 | TCONS_00063600-exon-scaffold_394-1575043694:126630..126992 | Clytia hemisphaerica | exon |
| TCONS_00063600-exon-scaffold_394-1510915933:127602..129922 | TCONS_00063600-exon-scaffold_394-1510915933:127602..129922 | Clytia hemisphaerica | exon |
| TCONS_00063600-exon-scaffold_394-1510915933:127440..127541 | TCONS_00063600-exon-scaffold_394-1510915933:127440..127541 | Clytia hemisphaerica | exon |
| TCONS_00063600-exon-scaffold_394-1510915933:126630..126992 | TCONS_00063600-exon-scaffold_394-1510915933:126630..126992 | Clytia hemisphaerica | exon |
| TCONS_00063600-exon-scaffold_394-1491911889:127602..129922 | TCONS_00063600-exon-scaffold_394-1491911889:127602..129922 | Clytia hemisphaerica | exon |
| TCONS_00063600-exon-scaffold_394-1491911889:127440..127541 | TCONS_00063600-exon-scaffold_394-1491911889:127440..127541 | Clytia hemisphaerica | exon |
| TCONS_00063600-exon-scaffold_394-1491911889:126630..126992 | TCONS_00063600-exon-scaffold_394-1491911889:126630..126992 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_394 | supercontig | scaffold_394:126630..129922 - |
Blast
The following BLAST results are available for this feature:
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