TCONS_00063594 (transcript) - C. hemisphaerica

Overview
NameTCONS_00063594
Unique NameTCONS_00063594
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length820

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00063594 ID=TCONS_00063594|Name=TCONS_00063594|organism=Clytia hemisphaerica|type=transcript|length=820bp
CTTCTACTACGTAACTTCATTGAAGATTTTTCTacgataaaactccaata
aatTTCATCATGAGAGAGTGTATTTCTATCCACGTCGGACAAGCCGGTGT
CCAAATCGGAAACGCTTGTTGGGAATTGTACTGTTTGGAACATGGAATCC
AACCTGACGGTCAGATGCCATCAGACAAAACCATTGGAGGTGGTGATGAT
TCATTCAATACTTTCTTCAGTGAAACTGGTGCTGGTAAACACGTCCCAAG
AGCTGTCTTCGTTGATTTGGAACCAACCGTTGTTGGTAAGAAAAATCTTT
TCGGCAATCTACTTATCAGTCTAGTCGAATTccaaaaactgagaaaaatt
tTGNtgattcagcatttcatcgttgaaaaaattgccgttttcggcaataa
tttccgtaaagagcaataattgcagtttttatcttaaacacccgactggt
cTAGTCGAATTccaaaaactgagaaaaatttttgttccGAAAATGGAACT
CTTTCatctctttttttaaatctttgaaaCCATGAAAttaaatgttctca
acttttctaTGTTTGATCGACGACACGCGATCTAAAATTTGTAAAGTTAT
TTCTCACAAAGCtacagattttcaaaaaaccgtaccgtttcacttttttt
tcatggttcaaaagaagaaagattgaattttaaggcatttttccaaaatt
ctatTGAAATGGCCTAATAAGTTAAGTTGAAGCAAGACGAGgcaaaattc
agtggggataagaaaaatagcataatattttgcagcgaggatagctttat
ttgattattttcagttgggA
Run BLAST on NCBI

protein sequence of TCONS_00063594-protein

>TCONS_00063594-protein ID=TCONS_00063594-protein|Name=TCONS_00063594-protein|organism=Clytia hemisphaerica|type=polypeptide|length=119bp
MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFN
TFFSETGAGKHVPRAVFVDLEPTVVGKKNLFGNLLISLVEFQKLRKILXI
QHFIVEKIAVFGNNFRKEQ
Run BLAST on NCBI

transcript from alignment at scaffold_394:174317..177128+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00063594 ID=TCONS_00063594|Name=TCONS_00063594|organism=Clytia hemisphaerica|type=transcript|length=2812bp|location=Sequence derived from alignment at scaffold_394:174317..177128+ (Clytia hemisphaerica)
CTTCTACTACGTAACTTCATTGAAGATTTTTCTacgataaaactccaata
aatTTCATCATGGTAAGCATTTGGACTtctttattttaaaaacattgggA
GAAGATTTGTTATAGTGATACTGTTGGGTTCTACCTTTTATTTCCTAACT
TTTACAAAAGGTAAAGCGAATATCAAAGGTTGGTTCTTAAGGGGATTAAG
caaatcttgatttttgttttgctgAAGATTTTCTGTGGATATCCCGTACA
AGGATTCAGCAAGTTCGAGGCTTTGACTTCATTCTTTTCATTCTTTAGAG
AGAGTGTATTTCTATCCACGTCGGACAAGCCGGTGTCCAAATCGGAAACG
CTTGTTGGGAATTGTACTGTTTGGAACATGGAATCCAACCTGACGGTCAG
ATGCCATCAGACAAAACCATTGGAGGTGGTGATGATTCATTCAACACTTT
CTTCAGTGAAACTGGTGCTGGTAAACACGTCCCAAGAGCTGTCTTCGTTG
ATTTGGAACCAACCGTTGTTGGTAAGAAAAATCTTTTCGGCAATCTACTT
ATCAGTCTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNaaataattacatatttctcatttatgatttttagcgt
ttcatcacttttttggccaaaaatgggtcatttttaggccgaaatccaaa
aaaaccggAATATGAACTTGAAAATAACCctatcatgttatatatcagtg
gaagcggaattttgagtagattttgaatatccaaGTTTCATCTCCTGAAA
AAGAACCCAActcaaattattatgctttaacagctaaaaatagacatggg
tacgagctttttgcttatggcTACCAGAAGGTTTCTTAGAAATGGTTCTA
TAGagataatgaaaatagaaattattCTCATTGTTTCTAGATTCCCATTA
TGCTTTACAGGCTTACGCACCTTTTGTTGCTAAGTTCGTTTCAATTTTGA
AAGCCTTTTTTTTCttagccagacggtgtcaatcgaacaaatcgaacgcc
gaatcaattgaacgcaatcgaatattacccaggatttgccgttcgattgc
ttcgattacgttcgataatcgaattgcaattattcgatcgcgttcgatta
cgttcgattggttcgattgcaatttttgttcgaagttgttcgattgacac
cgtctggtctTGGTGAATTGCACCAGATTTGTACCGTGTCCCGTCCGTCA
CACTTTTTCTTACATAGCCAAGTACAAGAGTGATACAGTTAGatacaaac
tttaaacattCATTTCTGGTCAAATATCACTTTAAAAATCCTGGTTGAAG
GAGCATCTTTTCcgttttttcggaaaaaaatgaaaaaccgtgTAATTTCA
AGGCAAAATAATTTCTAACGGGTACACCTTTAGATGACACTGGTTTTCTT
TTTAGAAAGTATAGACTTCAATATGGTTTTGGGAAGTTTTATGCGTGACA
AGGTTTTTTTACatcaatttttgcaaaaatcttgTTTTGTATACAAAATT
TGTCCCGTCCGTCACACAAGTACTTAATGGGTCTTTTGGGAGTGTTTAAT
GCAACTGTAAagttatttttacataattcaagGTCTTACACTGAACCTGT
TTTTTTGTGGTTGCGAATGTTGATGCttaagaaattttttgtttgagCTT
CTATGTTTGGCTGGTTCATTTAATTCGGATCTCTTTTTGTTCTTTAGACG
AAGTCCNACTTTTACAAAAGGTAAAGCGAATATCAAAGGTTGGTTCTTAA
GGGGATTAAGcaaatcttgatttttgttttgctgAAGATTTTCTGTGGGT
ATCCCGTACATTCAGCAAGTTCGAGGCTTTGACTTCATTCTTTTCATTCT
TTAGAGAGAGTGTATTTCTATCCACGTCGGACAAGCCGGTGTCCAAATCG
GAAACGCTTGTTGGGAATTGTACTGTTTGGAACATGGAATCCAACCTGAC
GGTCAGATGCCATCAGACAAAACCATTGGAGGTGGTGATGATTCATTCAA
TACTTTCTTCAGTGAAACTGGTGCTGGTAAACACGTCCCAAGAGCTGTCT
TCGTTGATTTGGAACCAACCGTTGTTGGTAAGAAAAATCTTTTCGGCAAT
CTACTTATCAGTCTAGTCGAATTccaaaaactgagaaaaatttTGNtgat
tcagcatttcatcgttgaaaaaattgccgttttcggcaataatttccgta
aagagcaataattgcagtttttatcttaaacacccgactggtcTAGTCGA
ATTccaaaaactgagaaaaatttttgttccGAAAATGGAACTCTTTCatc
tctttttttaaatctttgaaaCCATGAAAttaaatgttctcaacttttct
aTGTTTGATCGACGACACGCGATCTAAAATTTGTAAAGTTATTTCTCACA
AAGCtacagattttcaaaaaaccgtaccgtttcacttttttttcatggtt
caaaagaagaaagattgaattttaaggcatttttccaaaattctatTGAA
ATGGCCTAATAAGTTAAGTTGAAGCAAGACGAGgcaaaattcagtgggga
taagaaaaatagcataatattttgcagcgaggatagctttatttgattat
tttcagttgggA

Coding sequence (CDS) from alignment at scaffold_394:174317..177128+

>TCONS_00063594 ID=TCONS_00063594|Name=TCONS_00063594|organism=Clytia hemisphaerica|type=CDS|length=720bp|location=Sequence derived from alignment at scaffold_394:174317..177128+ (Clytia hemisphaerica)
ATGAGAGAGTGTATTTCTATCCACGTCGGACAAGCCGGTGTCCAAATCGG
AAACGCTTGTTGGGAATTGTACTGTTTGGAACATGGAATCCAACCTGACG
GTCAGATGCCATCAGACAAAACCATTGGAGGTGGTGATGATTCATTCAAT
ACTTTCTTCAGTGAAACTGGTGCTGGTAAACACGTCCCAAGAGCTGTCTT
CGTTGATTTGGAACCAACCGTTGTTGGTAAGAAAAATCTTTTCGGCAATC
TACTTATCAGTCTAGTCGAATTccaaaaactgagaaaaatttTGNtgatt
cagcatttcatcgttgaaaaaattgccgttttcggcaataatttccgtaa
agagcaataaATGAGAGAGTGTATTTCTATCCACGTCGGACAAGCCGGTG
TCCAAATCGGAAACGCTTGTTGGGAATTGTACTGTTTGGAACATGGAATC
CAACCTGACGGTCAGATGCCATCAGACAAAACCATTGGAGGTGGTGATGA
TTCATTCAATACTTTCTTCAGTGAAACTGGTGCTGGTAAACACGTCCCAA
GAGCTGTCTTCGTTGATTTGGAACCAACCGTTGTTGGTAAGAAAAATCTT
TTCGGCAATCTACTTATCAGTCTAGTCGAATTccaaaaactgagaaaaat
ttTGNtgattcagcatttcatcgttgaaaaaattgccgttttcggcaata
atttccgtaaagagcaataa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039857XLOC_039857Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063594-proteinTCONS_00063594-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063594-exon-scaffold_394-1491911889:174317..174378TCONS_00063594-exon-scaffold_394-1491911889:174317..174378Clytia hemisphaericaexon
TCONS_00063594-exon-scaffold_394-1510915933:174317..174378TCONS_00063594-exon-scaffold_394-1510915933:174317..174378Clytia hemisphaericaexon
TCONS_00063594-exon-scaffold_394-1575043694:174317..174378TCONS_00063594-exon-scaffold_394-1575043694:174317..174378Clytia hemisphaericaexon
TCONS_00063594-exon-scaffold_394-1491911889:176371..177128TCONS_00063594-exon-scaffold_394-1491911889:176371..177128Clytia hemisphaericaexon
TCONS_00063594-exon-scaffold_394-1510915933:176371..177128TCONS_00063594-exon-scaffold_394-1510915933:176371..177128Clytia hemisphaericaexon
TCONS_00063594-exon-scaffold_394-1575043694:176371..177128TCONS_00063594-exon-scaffold_394-1575043694:176371..177128Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_394supercontigscaffold_394:174317..177128 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.41399	0.425004	0.991225	0.718235	0.328379	0.320669	0.154556	0.225029	0.982558	1.62742	0.890012	1.58971	0.966697	1.01662	1.33101	1.67922	4.13818	3.81463	1.24546	1.81253	2.23939	1.60401	0.870143	0.873716	778.66	607.042	0.813909	1.30036	1.0193	0.713631
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000217Tubulin
IPR002452Alpha_tubulin
IPR003008Tubulin_FtsZ_GTPase
Vocabulary: Biological Process
TermDefinition
GO:0007017microtubule-based process
Vocabulary: Cellular Component
TermDefinition
GO:0005874microtubule
Vocabulary: Molecular Function
TermDefinition
GO:0005525GTP binding
GO:0005200structural constituent of cytoskeleton
GO:0003924GTPase activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007017 microtubule-based process
cellular_component GO:0005874 microtubule
molecular_function GO:0003924 GTPase activity
molecular_function GO:0005525 GTP binding
molecular_function GO:0005200 structural constituent of cytoskeleton
Blast
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BLAST of TCONS_00063594 vs. Swiss-Prot (Human)
Match: TBA3E (Tubulin alpha-3E chain OS=Homo sapiens GN=TUBA3E PE=1 SV=2)

HSP 1 Score: 164.466 bits (415), Expect = 9.508e-47
Identity = 75/77 (97.40%), Postives = 76/77 (98.70%), Query Frame = 3 
Query:   60 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVVGK 290
            MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVV +
Sbjct:    1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVVDE 77
The following BLAST results are available for this feature:
BLAST of TCONS_00063594 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TBA3E9.508e-4797.40Tubulin alpha-3E chain OS=Homo sapiens GN=TUBA3E P... [more]
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