|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00063590 ID=TCONS_00063590|Name=TCONS_00063590|organism=Clytia hemisphaerica|type=transcript|length=4549bpRun BLAST on NCBI transcript from alignment at scaffold_394:110319..129914+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00063590 ID=TCONS_00063590|Name=TCONS_00063590|organism=Clytia hemisphaerica|type=transcript|length=19596bp|location=Sequence derived from alignment at scaffold_394:110319..129914+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00063590 vs. Swiss-Prot (Human)
Match: ACK1 (Activated CDC42 kinase 1 OS=Homo sapiens GN=TNK2 PE=1 SV=3) HSP 1 Score: 227.254 bits (578), Expect = 1.307e-60 Identity = 145/443 (32.73%), Postives = 215/443 (48.53%), Query Frame = 1
Query: 142 DDKTLQVYQLLAENDLQSFYSSFNQTLKVYQKRDFIILCREDLQKVGL------------TTRSSFGHYEKLLESVKSNSQVGLPTFDFSDHYIHTLLPNQEPV---------------IISENDISQQDILGTGHFGKVYKGSWQRRLHDGKMVKVPVAI---KTITDGKEMS-WKTEVSIFTALNQNHSNIIKFLGLLIGGTEVRMVTEFAPYGSLLDRLRSKEIS-CIATLSQFAAQISSGMVYLHSRNLVHRDLSARNILVTGKKQVKISDFGLSKVLNDTQTEWVMDSSESLPMRWLAPESLTSGVFTSASDVWSYAVVLWEMFTFGDSPWGDLNNEQVKQKI-QNGECLPEPRFCPDEIYEVIKMCMTFDQCSRPPFHIIHQEVLHRQPRPLEAIVVSNGPYDLNFAPGDFITSIKILRDQEWWLGQHEKTLQFGRF 1371
++ T + +LL+E LQ ++ L V + F + EDL+K+G+ R + + + V S ++ +F H+ + P +I E D+ + LG G FG V +G W GK V V V ++ + M + EV+ +L+ H N+I+ G+++ ++MVTE AP GSLLDRLR + + TLS++A Q++ GM YL S+ +HRDL+ARN+L+ + VKI DFGL + L +VM +P W APESL + F+ ASD W + V LWEMFT+G PW LN Q+ KI + GE LP P CP +IY V+ C RP F + +L QP + A+ P L+ D IT I+ + WW GQ+ +TL G F
Sbjct: 4 EEGTGWLLELLSEVQLQQYFLRLRDDLNVTRLSHFEYVKNEDLEKIGMGRPGQRRLWEAVKRRKALCKRKSWMSKVFSGKRL---EAEFPPHHSQSTFRKTSPAPGGPAGEGPLQSLTCLIGEKDLRLLEKLGDGSFGVVRRGEWD--APSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLD--HRNLIRLYGVVLT-PPMKMVTELAPLGSLLDRLRKHQGHFLLGTLSRYAVQVAEGMGYLESKRFIHRDLAARNLLLATRDLVKIGDFGLMRALPQNDDHYVMQEHRKVPFAWCAPESLKTRTFSHASDTWMFGVTLWEMFTYGQEPWIGLNGSQILHKIDKEGERLPRPEDCPQDIYNVMVQCWAHKPEDRPTFVALRDFLLEAQPTDMRALQDFEEPDKLHIQMNDVITVIEGRAENYWWRGQNTRTLCVGPF 438 The following BLAST results are available for this feature:
BLAST of TCONS_00063590 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.