TCONS_00063564 (transcript) - C. hemisphaerica

Overview
NameTCONS_00063564
Unique NameTCONS_00063564
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length890

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00063564 ID=TCONS_00063564|Name=TCONS_00063564|organism=Clytia hemisphaerica|type=transcript|length=890bp
GCCTTATCTTGGCCCAAAgtttatcaacattttcttatATATAGGTGCac
taaaattaataaaagaacGACCCTGTTTGTTTAAAGATAGCTAGATAGAT
AGataaggagtaggaatcacagccaGTGTGTAAAATATCCAATAGCAGGA
CTGTGGAAGTGTCCGAGCCAGTGTGTAAATATCTGAGAGCAGGACTGTGG
AAAGCATCCAAGTCAGTGTGTAAAATTAATAATAGCACAACTGTGGATAG
TGTACGAGCCAATGTGTAAAATAACTGATAGCACGACTGGTGATAGCGTT
CCGAATCTGTACAGTATAGTGTTAAAATTGCATTTGCCAGAAATTGATTA
AACATTTCaacaatctttttaatttaacatGAGCTTTTTGTTTTATTCAA
GTTGAGTACAGTATTTTACGTACAGTATCATATATTCTGTTTTGattcca
ttaaaaaattccacaaagACGGGGTACACACACCACACTTTCAAATCACA
CAAATTGAAAGCAgataattatgacgtcatcctTTCTTTCTGGTGCAAGA
AAGTAATCCCCTGGTTTTAATACATTAGTAAAAACAAGTATTTTTGTCTC
TATTAATCAGGGGGTTCagatcaatattttgatttgaaacatGGCGTCAT
TTTGCTGcgctattcccaggagaataatttgctgTCAGCCGAATAAGGGT
TATACAATTGtttttttcagcttgagtttatgtctaatgttatgggtTTT
TGAAGTTCTAAGAGGTGAGAGGAGATAATTATTTTCAGTACAGTACACAG
CACTATTTTTGATTCCATGATCTTAGCTTGTCTTAGATGTCCTGTGCGTG
CATTGTCCGGTGTTGAAAATTATTTGATCTTAACATCAGC
Run BLAST on NCBI

transcript from alignment at scaffold_393:5..894

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00063564 ID=TCONS_00063564|Name=TCONS_00063564|organism=Clytia hemisphaerica|type=transcript|length=890bp|location=Sequence derived from alignment at scaffold_393:5..894 (Clytia hemisphaerica)
GCTGATGTTAAGATCAAATAATTTTCAACACCGGACAATGCACGCACAGG
ACATCTAAGACAAGCTAAGATCATGGAATCAAAAATAGTGCTGTGTACTG
TACTGAAAATAATTATCTCCTCTCACCTCTTAGAACTTCAAAAacccata
acattagacataaactcaagctgaaaaaaaCAATTGTATAACCCTTATTC
GGCTGAcagcaaattattctcctgggaatagcgCAGCAAAATGACGCCat
gtttcaaatcaaaatattgatctGAACCCCCTGATTAATAGAGACAAAAA
TACTTGTTTTTACTAATGTATTAAAACCAGGGGATTACTTTCTTGCACCA
GAAAGAAaggatgacgtcataattatcTGCTTTCAATTTGTGTGATTTGA
AAGTGTGGTGTGTGTACCCCGTctttgtggaattttttaatggaatCAAA
ACAGAATATATGATACTGTACGTAAAATACTGTACTCAACTTGAATAAAA
CAAAAAGCTCatgttaaattaaaaagattgttGAAATGTTTAATCAATTT
CTGGCAAATGCAATTTTAACACTATACTGTACAGATTCGGAACGCTATCA
CCAGTCGTGCTATCAGTTATTTTACACATTGGCTCGTACACTATCCACAG
TTGTGCTATTATTAATTTTACACACTGACTTGGATGCTTTCCACAGTCCT
GCTCTCAGATATTTACACACTGGCTCGGACACTTCCACAGTCCTGCTATT
GGATATTTTACACACtggctgtgattcctactccttatCTATCTATCTAG
CTATCTTTAAACAAACAGGGTCgttcttttattaattttagtGCACCTAT
ATataagaaaatgttgataaacTTTGGGCCAAGATAAGGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039850XLOC_039850Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063564-exon-scaffold_393-1491911889:5..894TCONS_00063564-exon-scaffold_393-1491911889:5..894Clytia hemisphaericaexon
TCONS_00063564-exon-scaffold_393-1510915933:5..894TCONS_00063564-exon-scaffold_393-1510915933:5..894Clytia hemisphaericaexon
TCONS_00063564-exon-scaffold_393-1575043694:5..894TCONS_00063564-exon-scaffold_393-1575043694:5..894Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_393supercontigscaffold_393:5..894 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.208386	0.304814	0.471891	0.634798	0.421531	0.277583	0.334892	0.815156	0.439782	0.761294	0.68615	0.34696	0.173239	0.575713	0.325403	0.190477	0.351978	0.120255	0.276899	0.289755	0.251849	0.515942	0.0597329	0.108612	0.0559337	0.249598	0.0714347	0.152474	0.173469	0.0589126
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00063564 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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