TCONS_00063560 (transcript) - C. hemisphaerica

Overview
NameTCONS_00063560
Unique NameTCONS_00063560
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length459

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00063560 ID=TCONS_00063560|Name=TCONS_00063560|organism=Clytia hemisphaerica|type=transcript|length=459bp
ATTTTAGAACGATTCGGATTACGTGTGTGGAGGAAAATGGACTGCTGCCA
AGAATGTTGGtcggaaaaaaggaaaactggACGAAACTGGATTAGAGGTT
GGAACCTGTCGACACAGATTTGCCCAAACTGCTTTGAACATGAAGCAAGG
TGAATTATACGGTTATCCTTTGTACATCATGAAACATCACATGTTGCCTC
GGAAAGTGGAATTTGCATGGAGTGACGTAATGTGCAAACTTTGGGGTTTC
GCCAAAAGAATTGAGCCGTCTATTGCTGAAGATTTAAACCCTGCCCTTTC
CGTCATGCACGCCAAAGGTCATAGCTTGGAGTGCCAAATGAAGTGGGATG
GACAATGGCTTGAGGATACTGGAAGGACAACTGGAGAAGAgacagaacaa
tttttttcatatattggCCGATGTTCCAACACAACAAAGTATCAATTACC
AGAAGGTAA
Run BLAST on NCBI

protein sequence of TCONS_00063560-protein

>TCONS_00063560-protein ID=TCONS_00063560-protein|Name=TCONS_00063560-protein|organism=Clytia hemisphaerica|type=polypeptide|length=106bp
MKQGELYGYPLYIMKHHMLPRKVEFAWSDVMCKLWGFAKRIEPSIAEDLN
PALSVMHAKGHSLECQMKWDGQWLEDTGRTTGEETEQFFSYIGRCSNTTK
YQLPEG
Run BLAST on NCBI

transcript from alignment at scaffold_393:13333..13979-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00063560 ID=TCONS_00063560|Name=TCONS_00063560|organism=Clytia hemisphaerica|type=transcript|length=647bp|location=Sequence derived from alignment at scaffold_393:13333..13979- (Clytia hemisphaerica)
ATTTTAGAACGATTCGGATTACGTGTGTGGAGGAAAATGGACTGCTGCCA
AGAATGTTGGTCGGAAAAAAGGAAAACTGGACGAAACTGGATTAGAGGTT
ACATTACTTGTTTCTCTTAAAACCGCAATATAGTCTGTTATATACATCTT
ACGTTGAATCAGCCGTTCTTGCAATTCATTTGTTACTTTCAGGTTGGAAC
CTGTCGACACAGATTTGCCCAAACTGCTTTGAACATGAAGCAAGGTGAAT
TATACGGTTATCCTTTGTACATCATGAAACATCACATGTTGCCTCGGAAA
GTGGAATTTGCATGGAGTGACGTAATGTGCAAACTTTGGGGTTTCGCCAA
AAGAATTGAGCCGTCTATTGCTGAAGATTTAAACCCTGCCCTTTCCGTCA
TGCACGCCAAAGGTCATAGCTTGGAGTGCCAAGTAAGTTATTTGTAAGTT
TTTATTCCCATAAAATACTATGTCCCTCCTTTTTTACAATGAGGCACACA
ATTTTTGAATGTTTCCTTCCTTTAGATGAAGTGGGATGGACAATGGCTTG
AGGATACTGGAAGGACAACTGGAGAAGAGACAGAACAATTTTTTTCATAT
ATTGGCCGATGTTCCAACACAACAAAGTATCAATTACCAGAAGGTAA

Coding sequence (CDS) from alignment at scaffold_393:13333..13979-

>TCONS_00063560 ID=TCONS_00063560|Name=TCONS_00063560|organism=Clytia hemisphaerica|type=CDS|length=636bp|location=Sequence derived from alignment at scaffold_393:13333..13979- (Clytia hemisphaerica)
ATGAAGTGGGATGGACAATGGCTTGAGGATACTGGAAGGACAACTGGAGA
AGAGACAGAACAATTTTTTTCATATATTGGCCGATGTTCCAACACAACAA
AGTATCAATTACCAGAAGGTATGAAGCAAGGTGAATTATACGGTTATCCT
TTGTACATCATGAAACATCACATGTTGCCTCGGAAAGTGGAATTTGCATG
GAGTGACGTAATGTGCAAACTTTGGGGTTTCGCCAAAAGAATTGAGCCGT
CTATTGCTGAAGATTTAAACCCTGCCCTTTCCGTCATGCACGCCAAAGGT
CATAGCTTGGAGTGCCAAATGAAGTGGGATGGACAATGGCTTGAGGATAC
TGGAAGGACAACTGGAGAAGAGACAGAACAATTTTTTTCATATATTGGCC
GATGTTCCAACACAACAAAGTATCAATTACCAGAAGGTATGAAGCAAGGT
GAATTATACGGTTATCCTTTGTACATCATGAAACATCACATGTTGCCTCG
GAAAGTGGAATTTGCATGGAGTGACGTAATGTGCAAACTTTGGGGTTTCG
CCAAAAGAATTGAGCCGTCTATTGCTGAAGATTTAAACCCTGCCCTTTCC
GTCATGCACGCCAAAGGTCATAGCTTGGAGTGCCAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039847XLOC_039847Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063560-proteinTCONS_00063560-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063560-exon-scaffold_393-1575043694:13883..13979TCONS_00063560-exon-scaffold_393-1575043694:13883..13979Clytia hemisphaericaexon
TCONS_00063560-exon-scaffold_393-1575043694:13548..13787TCONS_00063560-exon-scaffold_393-1575043694:13548..13787Clytia hemisphaericaexon
TCONS_00063560-exon-scaffold_393-1575043694:13333..13454TCONS_00063560-exon-scaffold_393-1575043694:13333..13454Clytia hemisphaericaexon
TCONS_00063560-exon-scaffold_393-1510915933:13883..13979TCONS_00063560-exon-scaffold_393-1510915933:13883..13979Clytia hemisphaericaexon
TCONS_00063560-exon-scaffold_393-1510915933:13548..13787TCONS_00063560-exon-scaffold_393-1510915933:13548..13787Clytia hemisphaericaexon
TCONS_00063560-exon-scaffold_393-1510915933:13333..13454TCONS_00063560-exon-scaffold_393-1510915933:13333..13454Clytia hemisphaericaexon
TCONS_00063560-exon-scaffold_393-1491911889:13883..13979TCONS_00063560-exon-scaffold_393-1491911889:13883..13979Clytia hemisphaericaexon
TCONS_00063560-exon-scaffold_393-1491911889:13548..13787TCONS_00063560-exon-scaffold_393-1491911889:13548..13787Clytia hemisphaericaexon
TCONS_00063560-exon-scaffold_393-1491911889:13333..13454TCONS_00063560-exon-scaffold_393-1491911889:13333..13454Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_393supercontigscaffold_393:13333..13979 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.70293	3.04448	0.964073	0.785996	9.76012	7.56135	6.56816	10.4192	9.44727	5.03629	4.88834	7.46644	4.53027	4.60671	4.19025	4.92916	3.30249	5.67798	2.71538	1.42073	3.7046	3.41318	1.95255	2.21894	1.676	6.52708	1.75129	0.623009	1.26008	1.4443
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00063560 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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