TCONS_00063559 (transcript) - C. hemisphaerica

Overview
NameTCONS_00063559
Unique NameTCONS_00063559
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1149

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00063559 ID=TCONS_00063559|Name=TCONS_00063559|organism=Clytia hemisphaerica|type=transcript|length=1149bp
TAGGAAGTCAAGAAAGCTCGTCATCAGCTGCCAGTCCTGCTAATCTTGCC
AGTCCTGCCAATCCTGCCAGTCCTGCTAATCTTGCCAGTCCTGCCAATCC
TGCCAGTCCTGCTAATCCTGCCAGTCCTGCCAATCCTGCCAGTCGTGCCA
GTCCTGCTAATCCTGCCAGTCGTGCCAATCCTGCCAGTCGTGTCAGTCCT
GCCAATCCTGCCAGTCGTGCCAGTCAGTCACCCACACAATCGGCAAATCT
TGGCACCCCTGTGGACGCTAACAATAATGAAAATCAAGAAGGCTCGTCAT
CAGCAGCTACTCCTGCCAGTCTTGACGCATCTGACGACGCTAGCAACAAT
GGCAATAAAAgaaTGTATCAATTGAGCGGAAGACCACAGAGAGGAAAATT
TGTGGCCCTTTATACCGTCGACCATGATAAATACTGGGTTATCAAGGTTT
CCAAAACGGCACGTGGTATGGTATGGGGATCGTGGGTAGAGAACTTTGAA
AATTGCTGGCATATCACGGATCAGCTCAAGGAACCAGTTTCCTTTGATAA
TattgttaatgataaaaaatataaaaaaatatgcagAGGTCTGGAAAATA
CAAGCAAGGTGGTCTATTGATTCGTAGGACCAACCAAAGTGGAAAATGCC
GTGTCAAAGGGTGTAGATTTTATCATAAATTTCTCAAGAATTTAAAACGG
CATGTTGAGCACAGTCATAAGATGACGTTGGCAGAACATAGAAAATTGCC
CCCGTCACTGCTCGCTGTATCCGTAAAGAAAAATGAGAGTAAAGGTTATA
TGAGATATAGAGTAACAGAACCTTGTCAGATTAAAAGATGCAAAAGGTTC
ATGCAGCCTTTTAATGATCTTACTCGACACTTAAGGGTTTCGCATAACAT
GACTAGGAAAAGCTATGATATCAAAAGgaAAGATGACATTTCAAAAGAAC
ACGAAGTAATCAGCGTTTTATCACTAGACAAGCGTGAAACAGTCAAATCA
GAACCTATGACAAATGTCGAAGTAAACCTTGAACCGTCAGAACCAGACGA
AACCTCGGAACCCGAATCAGATGAACGAAGTGTCCTAGATTCAGATGTTC
CTCCATCTTCTCCATTCAACcctgatgattttttttcactgaataaaaa
Run BLAST on NCBI

protein sequence of TCONS_00063559-protein

>TCONS_00063559-protein ID=TCONS_00063559-protein|Name=TCONS_00063559-protein|organism=Clytia hemisphaerica|type=polypeptide|length=205bp
GSQESSSSAASPANLASPANPASPANLASPANPASPANPASPANPASRAS
PANPASRANPASRVSPANPASRASQSPTQSANLGTPVDANNNENQEGSSS
AATPASLDASDDASNNGNKRMYQLSGRPQRGKFVALYTVDHDKYWVIKVS
KTARGMVWGSWVENFENCWHITDQLKEPVSFDNIVNDKKYKKICRGLENT
SKVVY
Run BLAST on NCBI

transcript from alignment at scaffold_393:3882..6796+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00063559 ID=TCONS_00063559|Name=TCONS_00063559|organism=Clytia hemisphaerica|type=transcript|length=2915bp|location=Sequence derived from alignment at scaffold_393:3882..6796+ (Clytia hemisphaerica)
TAGGAAGTCAAGAAAGCTCGTCATCAGCTGCCAGTCCTGCTAATCTTGCC
AGTCCTGCCAATCCTGCCAGTCCTGCTAATCTTGCCAGTCCTGCCAATCC
TGCCAGTCCTGCTAATCCTGCCAGTCCTGCCAATCCTGCCAGTCGTGCCA
GTCCTGCTAATCCTGCCAGTCGTGCCAATCCTGCCAGTCGTGTCAGTCCT
GCCAATCCTGCCAGTCGTGCCAGTCAGTCACCCACACAATCGGCAAATCT
TGGCACCCCTGTGGACGCTAACAATAATGGTAATAAAAgtcggtgttttt
tttcaaaaacaaaatcttttctttCGCACTTTATCAGTTAAAAACTCTGT
ATCATTgagggaatttgaatttttgcttcaccATGCATATTCATTTTGAT
CAAATAGAATTTCATCTTTAATGCCTTAGAAAATCAAGAAGGCTCGTCAT
CAGCAGCTACTCCTGCCAGTCTTGACGCATCTGACGACGCTAGCAACAAT
GGCAATAAAAGTAGGTGTTTTGAAACGTTAACGTTTAACTGAGATAAAGT
AAAGCAAGAGTGAATTTAATGCAACTCATTGCCAACAGGAAAAGAAGCCT
TATTGTCAAGATTTAGCTCTAACAGAATCTAAAGTTCTAATATCCTTCCA
GACATGACGTATGACTAATATCTATGTttctactttcattttcaggaaTG
TATCAATTGAGCGGAAGACCACAGAGAGGAAAATTTGTGGCCCTTTATAC
CGTCGACCATGATAAATACTGGGTTATCAAGGTTTCCAAAACGGCACGTG
GTATGGTATGGGGATCGTGGGTAGAGAACTTTGAAAATTGCTGGCATATC
ACGGATCAGCTCAAGGAACCAGTTTCCTTTGATAATGTAATTCGGAGGGG
CGACATGACCTCGTTTATTTCATTTAAGATGAAAGAATTGCCATCTGGGG
GGTTCATAGTCCCGCCAGATGTCCACGATGCCCTTTTAAAGGAAATAAAG
AAATTAGATTAAACCAAATTTTATActcttgtttttgtttgttgtaTTTT
ACCAATATACCCTTAGTACCCCTAAGGGTACACCTATTtaagaaaattaa
gttttctTTAAATTCTGCTACTGTTGTTGTGTCAGCGCACCTccgtattt
ttctttttctttttctttgattatttttaactATTAACTTAAACCCTGAT
TgcatttttttcaccttttctgATACTGAAGAAATCATAAACCTTCATGT
GGtttatttatttaatatttttttttcataaacagTTATGTATACAGTGA
ATGCATACTATGTAtatgaatttcttttcatttcagattgttaatgataa
aaaatataaaaaaatatgcagAGGTCTGGAAAATACAAGCAAGGTGGTCT
ATTGGTGAGTACATTTATTAGTAAATTGTCAACAATTTAATTGTCAGTAG
AATTTCAAGTGCTGAAAGCTTTCGATAGAGTTCGAATTATAGCCAGTCTA
CTTATCGGTTATGGTTTTTTATTAGTCTCTAAAAGATTGATTTCCAGGAT
CCTCTACCTTGATTTTCTTAGTGCTAAATAAAACTTAATAAAGTAGCTAG
TTTGAAGGTTTCATACCTCTTCTAAACCTATCGCTGCAGAATTGACTTTT
TTACAGATAAAAtggaaaatgttttgatttttttgttattcttttgcAGA
TTCGTAGGACCAACCAAAGTGGAAAATGCCGTGTCAAAGGGTGTAGATTT
TATCATAAATTTCTCAAGAATTTAAAACGGCATGTTGAGCACAGTCATAA
GATGACGTTGGCAGAACATAGAAAATTGCCCCCGTCACTGCTCGCTGTAT
CCGTAAAGAAAAATGAGAGTAAAGGTTATATGAGATATAGAGTAACAGAA
CCTTGTCAGATTAAAAGATGCAAAAGGTTCATGCAGCCTTTTAATGATCT
TACTCGACACTTAAGGGTTTCGCATAACATGACTAGGAAAAGCTATGATA
TCAAAAGGTAATTCTCAATAAGAACCTGTGAACTAAGCTTTATTTTCGAG
ATTTTCATGctcaaatgttcttaaacttttattaaagtccaaaaataatt
caaactaAGTTGAAAAGATTTAACAAGTCTTTCTACCGATTTCAGTTCTT
TGTCATATATTTCATATTCTTTCTTTAatatatgtttttcttttcaggaA
AGATGACATTTCAAAAGAACACGAAGTAATCAGCGTTTTATCACTAGGTG
ATTTTTCTATATACTTATTTGTAAATACATGATAGGAGCCGTTACAACCT
TACAGTGAAAAGGGGTCTATATATAGGCTGTGCATGAAATAGAATCGTCA
AAAGCACTTTACATCTACATTATTTAAATTGAATACATTGCAATGTTCTA
AAttcaataacatttttaacTTTAGAGGTCTCACTTTCCATCTTGATACA
TAATAGGCAAGAAGTTTGTCCAATACACCTAACAACCTCGAAACTACGAA
AGGATTTGGTGGGAGTATAAGGGTGACGGTTATCGTAAATTTTTAAAGTC
TGCAGGCCTTTTTCACATTACTTTTGGCGTCAGTCGTCACCCCGAAGCTC
GCACCTAATCTTCTTGTATTGAAGAACCTTCCTAAAATATTCAACATTAT
TTTAGCAACGCGTAACTTGCAGTTTATTCTTCATGTCAAATTTTTAAAGG
TGTAAGGTATGTTTGAAATGGTTCAAAATTTATTTACTTTCAGACAAGCG
TGAAACAGTCAAATCAGAACCTATGACAAATGTCGAAGTAAACCTTGAAC
CGTCAGAACCAGACGAAACCTCGGAACCCGAATCAGATGAACGAAGTGTC
CTAGATTCAGATGTTCCTCCATCTTCTCCATTCAACcctgatgatttttt
ttcactgaataaaaa

Coding sequence (CDS) from alignment at scaffold_393:3882..6796+

>TCONS_00063559 ID=TCONS_00063559|Name=TCONS_00063559|organism=Clytia hemisphaerica|type=CDS|length=3090bp|location=Sequence derived from alignment at scaffold_393:3882..6796+ (Clytia hemisphaerica)
GGAAGTCAAGAAAGCTCGTCATCAGCTGCCAGTCCTGCTAATCTTGCCAG
TCCTGCCAATCCTGCCAGTCCTGCTAATCTTGCCAGTCCTGCCAATCCTG
CCAGTCCTGCTAATCCTGCCAGTCCTGCCAATCCTGCCAGTCGTGCCAGT
CCTGCTAATCCTGCCAGTCGTGCCAATCCTGCCAGTCGTGTCAGTCCTGC
CAATCCTGCCAGTCGTGCCAGTCAGTCACCCACACAATCGGCAAATCTTG
GCACCCCTGTGGACGCTAACAATAATGAAAATCAAGAAGGCTCGTCATCA
GCAGCTACTCCTGCCAGTCTTGACGCATCTGACGACGCTAGCAACAATGG
CAATAAAAgaaTGTATCAATTGAGCGGAAGACCACAGAGAGGAAAATTTG
TGGCCCTTTATACCGTCGACCATGATAAATACTGGGTTATCAAGGTTTCC
AAAACGGCACGTGGTATGGTATGGGGATCGTGGGTAGAGAACTTTGAAAA
TTGCTGGCATATCACGGATCAGCTCAAGGAACCAGTTTCCTTTGATAATa
ttgttaatgataaaaaatataaaaaaatatgcagAGGTCTGGAAAATACA
AGCAAGGTGGTCTATTGAGGAAGTCAAGAAAGCTCGTCATCAGCTGCCAG
TCCTGCTAATCTTGCCAGTCCTGCCAATCCTGCCAGTCCTGCTAATCTTG
CCAGTCCTGCCAATCCTGCCAGTCCTGCTAATCCTGCCAGTCCTGCCAAT
CCTGCCAGTCGTGCCAGTCCTGCTAATCCTGCCAGTCGTGCCAATCCTGC
CAGTCGTGTCAGTCCTGCCAATCCTGCCAGTCGTGCCAGTCAGTCACCCA
CACAATCGGCAAATCTTGGCACCCCTGTGGACGCTAACAATAATGAAAAT
CAAGAAGGCTCGTCATCAGCAGCTACTCCTGCCAGTCTTGACGCATCTGA
CGACGCTAGCAACAATGGCAATAAAAgaaTGTATCAATTGAGCGGAAGAC
CACAGAGAGGAAAATTTGTGGCCCTTTATACCGTCGACCATGATAAATAC
TGGGTTATCAAGGTTTCCAAAACGGCACGTGGTATGGTATGGGGATCGTG
GGTAGAGAACTTTGAAAATTGCTGGCATATCACGGATCAGCTCAAGGAAC
CAGTTTCCTTTGATAATattgttaatgataaaaaatataaaaaaatatgc
agAGGTCTGGAAAATACAAGCAAGGTGGTCTATTGAGGAAGTCAAGAAAG
CTCGTCATCAGCTGCCAGTCCTGCTAATCTTGCCAGTCCTGCCAATCCTG
CCAGTCCTGCTAATCTTGCCAGTCCTGCCAATCCTGCCAGTCCTGCTAAT
CCTGCCAGTCCTGCCAATCCTGCCAGTCGTGCCAGTCCTGCTAATCCTGC
CAGTCGTGCCAATCCTGCCAGTCGTGTCAGTCCTGCCAATCCTGCCAGTC
GTGCCAGTCAGTCACCCACACAATCGGCAAATCTTGGCACCCCTGTGGAC
GCTAACAATAATGAAAATCAAGAAGGCTCGTCATCAGCAGCTACTCCTGC
CAGTCTTGACGCATCTGACGACGCTAGCAACAATGGCAATAAAAgaaTGT
ATCAATTGAGCGGAAGACCACAGAGAGGAAAATTTGTGGCCCTTTATACC
GTCGACCATGATAAATACTGGGTTATCAAGGTTTCCAAAACGGCACGTGG
TATGGTATGGGGATCGTGGGTAGAGAACTTTGAAAATTGCTGGCATATCA
CGGATCAGCTCAAGGAACCAGTTTCCTTTGATAATattgttaatgataaa
aaatataaaaaaatatgcagAGGTCTGGAAAATACAAGCAAGGTGGTCTA
TTGAGGAAGTCAAGAAAGCTCGTCATCAGCTGCCAGTCCTGCTAATCTTG
CCAGTCCTGCCAATCCTGCCAGTCCTGCTAATCTTGCCAGTCCTGCCAAT
CCTGCCAGTCCTGCTAATCCTGCCAGTCCTGCCAATCCTGCCAGTCGTGC
CAGTCCTGCTAATCCTGCCAGTCGTGCCAATCCTGCCAGTCGTGTCAGTC
CTGCCAATCCTGCCAGTCGTGCCAGTCAGTCACCCACACAATCGGCAAAT
CTTGGCACCCCTGTGGACGCTAACAATAATGAAAATCAAGAAGGCTCGTC
ATCAGCAGCTACTCCTGCCAGTCTTGACGCATCTGACGACGCTAGCAACA
ATGGCAATAAAAgaaTGTATCAATTGAGCGGAAGACCACAGAGAGGAAAA
TTTGTGGCCCTTTATACCGTCGACCATGATAAATACTGGGTTATCAAGGT
TTCCAAAACGGCACGTGGTATGGTATGGGGATCGTGGGTAGAGAACTTTG
AAAATTGCTGGCATATCACGGATCAGCTCAAGGAACCAGTTTCCTTTGAT
AATattgttaatgataaaaaatataaaaaaatatgcagAGGTCTGGAAAA
TACAAGCAAGGTGGTCTATTGAGGAAGTCAAGAAAGCTCGTCATCAGCTG
CCAGTCCTGCTAATCTTGCCAGTCCTGCCAATCCTGCCAGTCCTGCTAAT
CTTGCCAGTCCTGCCAATCCTGCCAGTCCTGCTAATCCTGCCAGTCCTGC
CAATCCTGCCAGTCGTGCCAGTCCTGCTAATCCTGCCAGTCGTGCCAATC
CTGCCAGTCGTGTCAGTCCTGCCAATCCTGCCAGTCGTGCCAGTCAGTCA
CCCACACAATCGGCAAATCTTGGCACCCCTGTGGACGCTAACAATAATGA
AAATCAAGAAGGCTCGTCATCAGCAGCTACTCCTGCCAGTCTTGACGCAT
CTGACGACGCTAGCAACAATGGCAATAAAAgaaTGTATCAATTGAGCGGA
AGACCACAGAGAGGAAAATTTGTGGCCCTTTATACCGTCGACCATGATAA
ATACTGGGTTATCAAGGTTTCCAAAACGGCACGTGGTATGGTATGGGGAT
CGTGGGTAGAGAACTTTGAAAATTGCTGGCATATCACGGATCAGCTCAAG
GAACCAGTTTCCTTTGATAATattgttaatgataaaaaatataaaaaaat
atgcagAGGTCTGGAAAATACAAGCAAGGTGGTCTATTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039846XLOC_039846Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063559-exon-scaffold_393-1491911889:3882..4160TCONS_00063559-exon-scaffold_393-1491911889:3882..4160Clytia hemisphaericaexon
TCONS_00063559-exon-scaffold_393-1510915933:3882..4160TCONS_00063559-exon-scaffold_393-1510915933:3882..4160Clytia hemisphaericaexon
TCONS_00063559-exon-scaffold_393-1575043694:3882..4160TCONS_00063559-exon-scaffold_393-1575043694:3882..4160Clytia hemisphaericaexon
TCONS_00063559-exon-scaffold_393-1491911889:4311..4391TCONS_00063559-exon-scaffold_393-1491911889:4311..4391Clytia hemisphaericaexon
TCONS_00063559-exon-scaffold_393-1510915933:4311..4391TCONS_00063559-exon-scaffold_393-1510915933:4311..4391Clytia hemisphaericaexon
TCONS_00063559-exon-scaffold_393-1575043694:4311..4391TCONS_00063559-exon-scaffold_393-1575043694:4311..4391Clytia hemisphaericaexon
TCONS_00063559-exon-scaffold_393-1491911889:4577..4767TCONS_00063559-exon-scaffold_393-1491911889:4577..4767Clytia hemisphaericaexon
TCONS_00063559-exon-scaffold_393-1510915933:4577..4767TCONS_00063559-exon-scaffold_393-1510915933:4577..4767Clytia hemisphaericaexon
TCONS_00063559-exon-scaffold_393-1575043694:4577..4767TCONS_00063559-exon-scaffold_393-1575043694:4577..4767Clytia hemisphaericaexon
TCONS_00063559-exon-scaffold_393-1491911889:5218..5285TCONS_00063559-exon-scaffold_393-1491911889:5218..5285Clytia hemisphaericaexon
TCONS_00063559-exon-scaffold_393-1510915933:5218..5285TCONS_00063559-exon-scaffold_393-1510915933:5218..5285Clytia hemisphaericaexon
TCONS_00063559-exon-scaffold_393-1575043694:5218..5285TCONS_00063559-exon-scaffold_393-1575043694:5218..5285Clytia hemisphaericaexon
TCONS_00063559-exon-scaffold_393-1491911889:5581..5888TCONS_00063559-exon-scaffold_393-1491911889:5581..5888Clytia hemisphaericaexon
TCONS_00063559-exon-scaffold_393-1510915933:5581..5888TCONS_00063559-exon-scaffold_393-1510915933:5581..5888Clytia hemisphaericaexon
TCONS_00063559-exon-scaffold_393-1575043694:5581..5888TCONS_00063559-exon-scaffold_393-1575043694:5581..5888Clytia hemisphaericaexon
TCONS_00063559-exon-scaffold_393-1491911889:6079..6128TCONS_00063559-exon-scaffold_393-1491911889:6079..6128Clytia hemisphaericaexon
TCONS_00063559-exon-scaffold_393-1510915933:6079..6128TCONS_00063559-exon-scaffold_393-1510915933:6079..6128Clytia hemisphaericaexon
TCONS_00063559-exon-scaffold_393-1575043694:6079..6128TCONS_00063559-exon-scaffold_393-1575043694:6079..6128Clytia hemisphaericaexon
TCONS_00063559-exon-scaffold_393-1491911889:6625..6796TCONS_00063559-exon-scaffold_393-1491911889:6625..6796Clytia hemisphaericaexon
TCONS_00063559-exon-scaffold_393-1510915933:6625..6796TCONS_00063559-exon-scaffold_393-1510915933:6625..6796Clytia hemisphaericaexon
TCONS_00063559-exon-scaffold_393-1575043694:6625..6796TCONS_00063559-exon-scaffold_393-1575043694:6625..6796Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063559-proteinTCONS_00063559-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_393supercontigscaffold_393:3882..6796 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	1.20685	0	0	10.7793	10.0517	12.4678	18.8059	8.99844	9.73226	2.26989	8.43179	3.42288	3.63027	3.84835	6.85819	6.05369	7.17052	3.1533	2.81467	6.78055	7.57861	1.96408	0.940982	1.14559	2.30191	4.19433	2.37743	0.563746	2.79903
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00063559 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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