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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00063556 ID=TCONS_00063556|Name=TCONS_00063556|organism=Clytia hemisphaerica|type=transcript|length=1046bp
CACATCTTGCTTGTCTGTCGATTAAGTCACGGTGGTGGTTACTAAGTTTT
ACCAGCTCTAGACCATAAAGGAGTTTAGGTATCACAAGAGTCTTAAAAAC
GTTTACAACTTGATTAGGATGCAGGTAGCGAACTCCACCTGTAATCAACG
ATGAGACGACGGACCACATCTCTGAAACTCGGTAGTCGATATGGTGGTTC
AGCTGAAGGATGCTTGATGACTTTCCCCATAGAAAACCAAGGTGTTTCAG
TTTGTTCTGAGGATGAATAATTTTGCCATCGAGTTGGATTGTAAGATCTG
CGAGGAGACTTTTTCCTGATATAAGATACTGAGTTTTTGCGTGGTTAAAT
TTGAGGTTGTGTTTGTGACCATAACGAATACAAATGTCCATTAAGGATTG
CAAACCAGAGAGAGTTGAGCTTATCAAGATCAAATCGTCTGCGAAAGCGA
TGACTGACGTGTCGGTGCCGTTCGGGAGAGAGGCTCCACATTTCTGATTG
GTAAGTTTCGACAATAAATCTTCGGTATAAAGGTTGAATAAGTAGGGAGA
GATGATAGAACCTTGTTTGACCCCCTGAGAAAGTTTAAAACTGTCAGATT
GGATACCACCGTAAACCACGCTGGATTCACTGCTTAGATACGTAGCAATG
AGGTATCTCACAATCGGTGTGGGTACTGATTCTTTGGATATTAGTTTCTC
AAATAGAAGACTCCAGTTACAACTGTCAAATGCTTTAGACACATCCAAGC
TGCAAATGTATAATGGTGAATTGTTTCTGTTGTAGAATCTGATGGTGTCT
TGCATTAAAAGCTCGGCATGGATTGTAGATGATTGGCTCGTAAAGCCGAA
TTGAGAGGAATGAGAAGCTTCGAGAATAGGACATTTGTTCAGTATAATTA
TTTCAATTAGCTTGGCCAGTATTGGCATAATGCTTATACCTCTGTAATTG
TTGGGgtcttttaaagttttattgTATGACTTCACCAAAGGAATGATGAT
GGAATTGCTAAGTAACGATGGAATGTGCTTTTCGGTAAAAATGCGG Run BLAST on NCBI protein sequence of TCONS_00063556-protein >TCONS_00063556-protein ID=TCONS_00063556-protein|Name=TCONS_00063556-protein|organism=Clytia hemisphaerica|type=polypeptide|length=348bp
RIFTEKHIPSLLSNSIIIPLVKSYNKTLKDPNNYRGISIMPILAKLIEII
ILNKCPILEASHSSQFGFTSQSSTIHAELLMQDTIRFYNRNNSPLYICSL
DVSKAFDSCNWSLLFEKLISKESVPTPIVRYLIATYLSSESSVVYGGIQS
DSFKLSQGVKQGSIISPYLFNLYTEDLLSKLTNQKCGASLPNGTDTSVIA
FADDLILISSTLSGLQSLMDICIRYGHKHNLKFNHAKTQYLISGKSLLAD
LTIQLDGKIIHPQNKLKHLGFLWGKSSSILQLNHHIDYRVSEMWSVVSSL
ITGGVRYLHPNQVVNVFKTLVIPKLLYGLELVKLSNHHRDLIDRQARC Run BLAST on NCBI transcript from alignment at scaffold_392:298435..299480 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00063556 ID=TCONS_00063556|Name=TCONS_00063556|organism=Clytia hemisphaerica|type=transcript|length=1046bp|location=Sequence derived from alignment at scaffold_392:298435..299480 (Clytia hemisphaerica)
CCGCATTTTTACCGAAAAGCACATTCCATCGTTACTTAGCAATTCCATCA
TCATTCCTTTGGTGAAGTCATAcaataaaactttaaaagacCCCAACAAT
TACAGAGGTATAAGCATTATGCCAATACTGGCCAAGCTAATTGAAATAAT
TATACTGAACAAATGTCCTATTCTCGAAGCTTCTCATTCCTCTCAATTCG
GCTTTACGAGCCAATCATCTACAATCCATGCCGAGCTTTTAATGCAAGAC
ACCATCAGATTCTACAACAGAAACAATTCACCATTATACATTTGCAGCTT
GGATGTGTCTAAAGCATTTGACAGTTGTAACTGGAGTCTTCTATTTGAGA
AACTAATATCCAAAGAATCAGTACCCACACCGATTGTGAGATACCTCATT
GCTACGTATCTAAGCAGTGAATCCAGCGTGGTTTACGGTGGTATCCAATC
TGACAGTTTTAAACTTTCTCAGGGGGTCAAACAAGGTTCTATCATCTCTC
CCTACTTATTCAACCTTTATACCGAAGATTTATTGTCGAAACTTACCAAT
CAGAAATGTGGAGCCTCTCTCCCGAACGGCACCGACACGTCAGTCATCGC
TTTCGCAGACGATTTGATCTTGATAAGCTCAACTCTCTCTGGTTTGCAAT
CCTTAATGGACATTTGTATTCGTTATGGTCACAAACACAACCTCAAATTT
AACCACGCAAAAACTCAGTATCTTATATCAGGAAAAAGTCTCCTCGCAGA
TCTTACAATCCAACTCGATGGCAAAATTATTCATCCTCAGAACAAACTGA
AACACCTTGGTTTTCTATGGGGAAAGTCATCAAGCATCCTTCAGCTGAAC
CACCATATCGACTACCGAGTTTCAGAGATGTGGTCCGTCGTCTCATCGTT
GATTACAGGTGGAGTTCGCTACCTGCATCCTAATCAAGTTGTAAACGTTT
TTAAGACTCTTGTGATACCTAAACTCCTTTATGGTCTAGAGCTGGTAAAA
CTTAGTAACCACCACCGTGACTTAATCGACAGACAAGCAAGATGTG Coding sequence (CDS) from alignment at scaffold_392:298435..299480 >TCONS_00063556 ID=TCONS_00063556|Name=TCONS_00063556|organism=Clytia hemisphaerica|type=CDS|length=1044bp|location=Sequence derived from alignment at scaffold_392:298435..299480 (Clytia hemisphaerica)
CGCATTTTTACCGAAAAGCACATTCCATCGTTACTTAGCAATTCCATCAT
CATTCCTTTGGTGAAGTCATAcaataaaactttaaaagacCCCAACAATT
ACAGAGGTATAAGCATTATGCCAATACTGGCCAAGCTAATTGAAATAATT
ATACTGAACAAATGTCCTATTCTCGAAGCTTCTCATTCCTCTCAATTCGG
CTTTACGAGCCAATCATCTACAATCCATGCCGAGCTTTTAATGCAAGACA
CCATCAGATTCTACAACAGAAACAATTCACCATTATACATTTGCAGCTTG
GATGTGTCTAAAGCATTTGACAGTTGTAACTGGAGTCTTCTATTTGAGAA
ACTAATATCCAAAGAATCAGTACCCACACCGATTGTGAGATACCTCATTG
CTACGTATCTAAGCAGTGAATCCAGCGTGGTTTACGGTGGTATCCAATCT
GACAGTTTTAAACTTTCTCAGGGGGTCAAACAAGGTTCTATCATCTCTCC
CTACTTATTCAACCTTTATACCGAAGATTTATTGTCGAAACTTACCAATC
AGAAATGTGGAGCCTCTCTCCCGAACGGCACCGACACGTCAGTCATCGCT
TTCGCAGACGATTTGATCTTGATAAGCTCAACTCTCTCTGGTTTGCAATC
CTTAATGGACATTTGTATTCGTTATGGTCACAAACACAACCTCAAATTTA
ACCACGCAAAAACTCAGTATCTTATATCAGGAAAAAGTCTCCTCGCAGAT
CTTACAATCCAACTCGATGGCAAAATTATTCATCCTCAGAACAAACTGAA
ACACCTTGGTTTTCTATGGGGAAAGTCATCAAGCATCCTTCAGCTGAACC
ACCATATCGACTACCGAGTTTCAGAGATGTGGTCCGTCGTCTCATCGTTG
ATTACAGGTGGAGTTCGCTACCTGCATCCTAATCAAGTTGTAAACGTTTT
TAAGACTCTTGTGATACCTAAACTCCTTTATGGTCTAGAGCTGGTAAAAC
TTAGTAACCACCACCGTGACTTAATCGACAGACAAGCAAGATGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00063556-exon-scaffold_392-1491911889:298435..299480 | TCONS_00063556-exon-scaffold_392-1491911889:298435..299480 | Clytia hemisphaerica | exon |
| TCONS_00063556-exon-scaffold_392-1510915933:298435..299480 | TCONS_00063556-exon-scaffold_392-1510915933:298435..299480 | Clytia hemisphaerica | exon |
| TCONS_00063556-exon-scaffold_392-1575043694:298435..299480 | TCONS_00063556-exon-scaffold_392-1575043694:298435..299480 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_392 | supercontig | scaffold_392:298435..299480 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000477 | RT_dom |
Blast
The following BLAST results are available for this feature:
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