TCONS_00063549 (transcript) - C. hemisphaerica

Overview
NameTCONS_00063549
Unique NameTCONS_00063549
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length795

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00063549 ID=TCONS_00063549|Name=TCONS_00063549|organism=Clytia hemisphaerica|type=transcript|length=795bp
CAACCTaacaaaaggaaagaaaaggtATCTTTTTTAAAGGTCTCCTATCT
CGAGGATTATTAAATGTTAAAaactataaataaaataatccaGCTGTAGA
CCATCAGCCACATTTCCTCATGATTTCCTCAAAATTATTTGGTGGACCTC
TCGAATTCTGTTTCCCTGGTTATTACACCACCGCGTAACATATATTCTCT
TTGTTAACATTTCTCATTATGAAATACACTACCATGCATTctgaatagaa
atagaaatgtccACGATAGAAACGATCTAACAAGTGATTAAAAACAATGT
TACTCAAATCTTTCGAAATGAAAAAATAGTGCTTtattttggtaacaaaa
acaaGGAGCCTACTAAGTATATACTCCTGTACTTCCAAGTTTGTTCGAAG
CGGGGATGATCCATGGAGCAATCTTTAACAAAAATCCAACCACTATCATT
CCAGCATACAGATATGTTTGATTAATTTGTGTGTCTCACCACACCACTGT
CCTTTCTTCGACTAATTCATAAAACCATTCGTCAATCTTTGCCCATTTTA
CCAAAATAAAGTCTTTATGTAACAAAAATAATCCAACATAAGCAGTGCTC
CAGAGAAAGTTTCTTGTAGTCATCTTTCTGCGCTTTCCCTTTATAAATTC
GTATCTAATAATTTCTGGATAATTCTAGACAACTAGTGACTAGCCAttcc
aaaaactttttgaagagtgactcttcaaagttcaaagcacaaaataaata
aaaacacaacATTCTGCAACATTTCGAACTCTCTTGGTACGTTTT
Run BLAST on NCBI

transcript from alignment at scaffold_392:209204..209998

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00063549 ID=TCONS_00063549|Name=TCONS_00063549|organism=Clytia hemisphaerica|type=transcript|length=795bp|location=Sequence derived from alignment at scaffold_392:209204..209998 (Clytia hemisphaerica)
AAAACGTACCAAGAGAGTTCGAAATGTTGCAGAATgttgtgtttttattt
attttgtgctttgaactttgaagagtcactcttcaaaaagtttttggaaT
GGCTAGTCACTAGTTGTCTAGAATTATCCAGAAATTATTAGATACGAATT
TATAAAGGGAAAGCGCAGAAAGATGACTACAAGAAACTTTCTCTGGAGCA
CTGCTTATGTTGGATTATTTTTGTTACATAAAGACTTTATTTTGGTAAAA
TGGGCAAAGATTGACGAATGGTTTTATGAATTAGTCGAAGAAAGGACAGT
GGTGTGGTGAGACACACAAATTAATCAAACATATCTGTATGCTGGAATGA
TAGTGGTTGGATTTTTGTTAAAGATTGCTCCATGGATCATCCCCGCTTCG
AACAAACTTGGAAGTACAGGAGTATATACTTAGTAGGCTCCttgtttttg
ttaccaaaataAAGCACTATTTTTTCATTTCGAAAGATTTGAGTAACATT
GTTTTTAATCACTTGTTAGATCGTTTCTATCGTggacatttctatttcta
ttcagAATGCATGGTAGTGTATTTCATAATGAGAAATGTTAACAAAGAGA
ATATATGTTACGCGGTGGTGTAATAACCAGGGAAACAGAATTCGAGAGGT
CCACCAAATAATTTTGAGGAAATCATGAGGAAATGTGGCTGATGGTCTAC
AGCtggattattttatttatagttTTTAACATTTAATAATCCTCGAGATA
GGAGACCTTTAAAAAAGATaccttttctttccttttgttAGGTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039838XLOC_039838Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063549-exon-scaffold_392-1491911889:209204..209998TCONS_00063549-exon-scaffold_392-1491911889:209204..209998Clytia hemisphaericaexon
TCONS_00063549-exon-scaffold_392-1510915933:209204..209998TCONS_00063549-exon-scaffold_392-1510915933:209204..209998Clytia hemisphaericaexon
TCONS_00063549-exon-scaffold_392-1575043694:209204..209998TCONS_00063549-exon-scaffold_392-1575043694:209204..209998Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_392supercontigscaffold_392:209204..209998 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.29929	0.320191	0.308432	0.504412	0.449362	0.608114	0.290108	0.391881	0.82628	0.316491	0.408071	0.50355	0.583892	0.327113	0.513158	0.550723	0.1729	0	0.209767	0.416225	1.03123	0.368693	0.297404	2.34222	3.47725	0.71153	0.438534	0.376257	0.377055
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00063549 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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