TCONS_00063546 (transcript) - C. hemisphaerica

Overview
NameTCONS_00063546
Unique NameTCONS_00063546
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length236

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00063546 ID=TCONS_00063546|Name=TCONS_00063546|organism=Clytia hemisphaerica|type=transcript|length=236bp
CCCAGTCAGACTTCTGATGAGTTTGAGGTTTTCTCTCGTAAATGGGAGGA
GACAATTATAAACATTAATAATTTTTCTCCGACTGCTACAATTTTTCTTG
GGGATTTTAATGTCAAGAATTCTGACTGGTGGGGCGGTGACGTCACTGAT
CCTGGTGGTAGAGATATTCAAAATCTAGCTACCCAGCATGGTCTGCGTCA
ATTAATTGATGGACCTACTCACCTCCCTCAAAATTC
Run BLAST on NCBI

transcript from alignment at scaffold_392:137563..137798

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00063546 ID=TCONS_00063546|Name=TCONS_00063546|organism=Clytia hemisphaerica|type=transcript|length=236bp|location=Sequence derived from alignment at scaffold_392:137563..137798 (Clytia hemisphaerica)
GAATTTTGAGGGAGGTGAGTAGGTCCATCAATTAATTGACGCAGACCATG
CTGGGTAGCTAGATTTTGAATATCTCTACCACCAGGATCAGTGACGTCAC
CGCCCCACCAGTCAGAATTCTTGACATTAAAATCCCCAAGAAAAATTGTA
GCAGTCGGAGAAAAATTATTAATGTTTATAATTGTCTCCTCCCATTTACG
AGAGAAAACCTCAAACTCATCAGAAGTCTGACTGGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039835XLOC_039835Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063546-exon-scaffold_392-1491911889:137563..137798TCONS_00063546-exon-scaffold_392-1491911889:137563..137798Clytia hemisphaericaexon
TCONS_00063546-exon-scaffold_392-1510915933:137563..137798TCONS_00063546-exon-scaffold_392-1510915933:137563..137798Clytia hemisphaericaexon
TCONS_00063546-exon-scaffold_392-1575043694:137563..137798TCONS_00063546-exon-scaffold_392-1575043694:137563..137798Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_392supercontigscaffold_392:137563..137798 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.959263	3.74173	0	0	1.29362	1.78676	1.23328	4.33309	0.808352	4.0051	4.85931	0.638864	2.30557	2.65018	1.0894	1.1691	0	0.738095	0	1.06706	0.92747	2.71432	1.09987	1.99989	1.02992	0	2.63068	4.2113	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00063546 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top