TCONS_00063540 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00063540
Unique Name	TCONS_00063540
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	740

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_392:197563..203826-

transcript sequence

>TCONS_00063540 ID=TCONS_00063540|Name=TCONS_00063540|organism=Clytia hemisphaerica|type=transcript|length=740bp
CTCGAAAACATCTTGCTTGATGAAAGTGGAATAATCAAAATTTCTGaTTT
CGGCATTTCAAGTTTCCCATCATCACGTGATCGCCTCTGTGAGACATTTT
GTGGAACCATGTCTTATATGGCTCCAGAAGTGGTTAGCGGATACAACGGT
ACCTGTGATGCCCGATATGATGGTCGGAAAGCTGATATTTGGTCACTAAT
TCATCAATCTCTTGCGAGAAATGTTGCATCATGACCCGTCAAGAAGAGTT
ACCATCGACAGAATTATCAGCCATCCTTGGTTATCAGAGGATTTCGATAA
AGAAGAGGTATCTTTACAGAACATTGACCagattaaaaacaaagaaaaca
ttgaAGATATCAAAGTTCTTCTTGCCAAGCTGGACTTGgccaatgaaaaa
atcaaacttttggaAGGAGAAAATCAGGatctaaaaaaaatgtttccttc
TTGCTTGGATAAAAAACGGAAAATGGAAGTGATGTCAATcaaaaagtctg
aaaagaaaaagaagcctgagaaaaatgaagatgtcaTTGCTGCTTCCAAC
CCAGAATATCCGAATGGTCACCATTTTGAGCCTGAGGAGATGTGGGAGTA
CCCAAATGGTCACCACTTCCCCTCAGTGGAGCAATGGGAATGAATCAACC
AAATAATTTATCAGTTTTTGTAAATAGTATATTCAAGATCAGTGTACTTC
TTTTATCACTACCATTCAAAAATAAGAAACCTACAAAAAC

Run BLAST on NCBI

transcript from alignment at scaffold_392:197563..203826-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00063540 ID=TCONS_00063540|Name=TCONS_00063540|organism=Clytia hemisphaerica|type=transcript|length=6264bp|location=Sequence derived from alignment at scaffold_392:197563..203826- (Clytia hemisphaerica)
CTCGAAAACATCTTGCTTGATGAAAGTGGAATAATCAAAATTTCTGGTAA
GCTTTCCCAGCATTAAATTAGACCTTTTAAGACAACTCAGCACTGAAAGA
TGGTGTATATATTTATGTAGGAAACTCTGATAAGCGAAAAACTCCAAATT
ACGTTAGGCGTACTGTGTACTGTGATTTCAATAAGTTTAAGTTGGTGTTG
TAAGAAATCCATACTTCATATACTGTATATCAATATTTTCTTTCCTTTTA
GATTTCGGCATTTCAAGTTTCCCATCATCACGTGATCGCCTCTGTGAGAC
ATTTTGTGGAACCATGTCTTATATGGCTCCAGAAGTGGTTAGCGGATACA
ACGGTACCTGTGATGCCCGATATGATGGTCGGAAAGCTGATATTTGGTCA
CTGTAAGCTATCTAATTTCAACATTTTAACCTTGCTTATCACAACCCAGA
AGGGTTGTACTTAAATTGGCCTTCAGAGTTATTTTCAATAAATCGACAAA
TCGTTCTCTAATCGTAGCACTGACTACTACACTACTAAAGGCATCAATCA
AATCACATTTGATTTTATTGCTTTTATTATTATATCTTCAATAATCCAAG
AGAACTTAGATCACAGATCTGTAAAGCCCGAAGGGCTAGATAGGCAACTT
TAAGCTTTCTCCAGAAAAAAAAAAATGGAGCAAAAATTTGGCTGTAATTT
CAATTTTAATTTTTTCATTCTATTATCTAATTTGTACTGGAGCCTATCTA
AGGGGATGATCAGACATCTTAATTAGGAACCAGAGATTGAGTCAATCTTA
GCTACGAAGGGGACGGGTTAAGAACCTAGGGAGCAGAACCTAATCTTACC
TACAGACAGTGATGTGAGACTATGCAGTTACTATTCAGATTATTTGACAA
TAACAGTGCCCTACAATGCTAACTATAAATATAAGAATACTAACAACCCT
AAGTCCTGAGCTGGTCCGCCGCCGATCGCTGCCGATATAACACTAAAGTT
CAGGAGGGCTAGACAGCAATTGTTAAGTTGCTGTCTAGTGGAGCGTGGAA
GGCGCTATGGGACGTAAGGAGGCTGCTAGGTGGTTGCTATAAAGGTGCAG
CCGAAGGATCTTTAGTAGAAAGTCATCTACTATTGTAATCTAAACAAAAC
AAGACGACTCAGAGTCGAAAATTTCGCACAGTGTTTGATTATTCATAGAT
GATATAATCATTTTAAACGACCGGGACTGGGGGAGTACTAGGGTTAGAGA
ATGTCAGGTCAGACCTGAGAAAAACTGGCTCTAACAGAGAATAAAGTTAT
CCTTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNTTAAAAGAATTTCTAACCTTCTAGAGATCT
TTTTTTGACTTTTCAAGTTTCGTACCTTAAATAATTCAGAGAGACTTGGG
AAGGTCAAAAACCAAACCTCAACATCAGCACATACCTGGTACCTATTGAT
GTCTAAGTACTCCCTCCCCCTTTACCATTAAAAGAATGCAATAAATAGAA
CGAGGCTAGAGCTAGAGCTTTATTGCCACCTAAATGTGAACTGTCCCAGT
GNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCACATCAGTT
TTTACTGCCAATATATATGAAATTGTATATAGTTTGTATACGGTATATTG
TATATAACCTGACCTGTGTTGACAAATAAATAAATATCAATCCGACAAAG
ATATATACAAACATTTACAAAAATACAAAAAGTTTACACCTTGTAAAGAT
AAATCGAATTTAAACCAAATTAAACGAAAACATATCAAAAAGCTCAAACT
CTATATTCTGCTATTTTGGTCATGTTTGCTATTTTCAATATTTTAGCCCA
CAAGGCTGTACAGTAACTTTTTATCTTAGNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNCAATCAACTGTGGCAGGCATTTAATTTTGATGATGCCTTGAAA
AATAAATATATATAAAAGAGTTTGATTAGACCATGAGGGCTATTTTTGGC
AAAATATTGCTATTAGAGAATTAGATAAGAAAAATAACTGTTTGAAAGCT
TGAAAAAGCACAAATTTGGAAAATTACATGAAATATTCTAAATTTGGTGG
AAATTATAGTGAAATTTGTAAACCAATTTTCTTTCTGCAAAAGTTTTTTT
ACCTTTAAAAGCTAAAACTTTGTTACTGCTGTTATTTGCATTGCATCCAT
GTCATTGAGACGCAGAGTTACACATTTTTGAGAATTTTTTGATTGACTTT
ACAAATACAATAGAAAATTGATTTCGAGCAGGTCGATCAAATTTGATAAC
AATCTTGTCATTGTTTCCCTCACTCACATTCATTTGGGTTGACCCGGGTG
AAGGCTCATTCACTTTCCAAGTGAACCGTTGCCATCAGGAATCGAAACCT
TTGAAGCCTGTGTAGTATTCAAGGTTAATGACCACTATTCCACGAAGCGC
CCATCCAACATGCCAGACTCTCCCATTCGATACAATCGATATCCTTTTCC
AATCGATTACTAATCGATAAATAATTGATGGATTGGATATTTATTGTTTT
TGATAATCGATAGGCAATTATAATCAAGATTTAACGGGAAGCTTTTGATT
GGCTATCAATTGATGGAATTTCCATCGATTTACTCTTAAGATGTTCGATA
TTGTTCACAATCAATCGACAGCCAATTGATGAAAAACCAATCTATTATCA
GTTAGAATAGTCTCGATTACCTATCAATTCAATGATTATTGAAATCAAGC
GGTATCCAATCAATCGGTTGGTTAGCGATTACTGTAACTTGGTCTAATGT
GTCGACTCCCCTCCTCTAATTCCGACACCCTTTTTACCAGCTGAGATTTA
TAGAAAGATTGAAACTGTTTTTCTTTGCTTATATAGTGGTCAGAGAGGAA
TAACCCTTTTTCAATCAGTGATTCAAGCTTTCATATTATTCCTTTCTCTA
AAGAAGGGTGTCAGAATTTAGACGAGGGATGTCGTTATTAGACCAACCCA
ACTACTTACGGTAGTCATCGATTGGAAATAGTTATCTAGAGTGGGAAAGT
CTGGAAACTGACACATCTCACCTACCTACTGTGAAGTCGGGTAACTTGCA
TCAGTGGAGGGAAACTTGCATAGCCATCAATCAAATGACTGACCAATCAA
ATAGCAACAAAAATTCCAAAACAAATGAACTATGCAGCTCCGCACACAGC
TCTACTGTATCATTTTTGTTTTGATTTAACTTTGTATTTTAATGACCAGA
CGGGTCATTCATTTGAGGGCTATGCATGTTTGCCTCCACTGATGCAAGGT
AAATTAACCCGATCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNTCACTTATACACATTGGCATCC
CCTGCCATAAATTTTTCTGTGAAATACTTAGTAAATGATAATCTGTCTTA
CAACACAACTTAATCAAATATCAACAAATAACTCTACCTGTAAAAATGAA
GATCATACCTGTCTGTTGTCTGTGTTGTTGTGTGTAGTGATTTTCAAGAA
CAGTTCTTTAATTGTAAGATTCATGTCACTTTATTGGTGCATTTACTAAC
TACACAAACATAAAATACTATGCTAAAAGAAAAATAATCCTCTTTAAGTA
CTCTAAAAACACTAAAAACATGACAAAAATACAAAAAAACAGAGCAAGTC
TGACAGCATGCTGAAATCCGCCATTAAAAAAAAGCAATGTTTACGAATGC
TTGGTCACGCCTACCAAACACTTGCAGACCGGAATCATTTAATTTTATCT
TAGCGAGTGAGTCCATATTTCAGAATTTTCGAGAATGTTCTAGAAGTTTC
AACTACTTTCGTTTTCTAATTTTTCTTCCGCACCGCCGCCGTCGCCACGA
AAGCCTATCGTAATACTTTCGCTATGCGAAATTAATAATGAAATAACGAC
ATACTATAATCATCTTTGTAGAATTCATCAATCTCTTGCGAGAAATGTTG
CATCATGACCCGTCAAGAAGAGTTACCATCGACAGAATTATCAGCCATCC
TTGGTTATCAGAGGATTTCGATAAAGAAGAGGTATCTTTACAGAACATTG
ACCAGATTAAAAACAAAGAAAACATTGAAGATATCAAAGTTCTTCTTGCC
AAGCTGGACTTGGCCAATGAAAAAATCAAACTTTTGGAAGGAGAAAATCA
GGATCTAAAAAAAATGTTTCCTTCTTGCTTGGATAAAAAACGGAAAATGG
AAGTGATGTCAATCAAAAAGTCTGAAAAGAAAAAGAAGCCTGAGAAAAAT
GAAGATGTCATTGCTGCTTCCAACCCAGAATATCCGAATGGTCACCATTT
TGAGCCTGAGGAGATGTGGGAGTACCCAAATGGTCACCACTTCCCCTCAG
TGGAGCAATGGGAATGAATCAACCAAATAATTTATCAGTTTTTGTAAATA
GTATATTCAAGATCAGTGTACTTCTTTTATCACTACCATTCAAAAATAAG
AAACCTACAAAAAC

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_039829	XLOC_039829	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00063540-exon-scaffold_392-1575043694:203781..203826	TCONS_00063540-exon-scaffold_392-1575043694:203781..203826	Clytia hemisphaerica	exon
TCONS_00063540-exon-scaffold_392-1575043694:203425..203575	TCONS_00063540-exon-scaffold_392-1575043694:203425..203575	Clytia hemisphaerica	exon
TCONS_00063540-exon-scaffold_392-1575043694:197563..198105	TCONS_00063540-exon-scaffold_392-1575043694:197563..198105	Clytia hemisphaerica	exon
TCONS_00063540-exon-scaffold_392-1510915933:203781..203826	TCONS_00063540-exon-scaffold_392-1510915933:203781..203826	Clytia hemisphaerica	exon
TCONS_00063540-exon-scaffold_392-1510915933:203425..203575	TCONS_00063540-exon-scaffold_392-1510915933:203425..203575	Clytia hemisphaerica	exon
TCONS_00063540-exon-scaffold_392-1510915933:197563..198105	TCONS_00063540-exon-scaffold_392-1510915933:197563..198105	Clytia hemisphaerica	exon
TCONS_00063540-exon-scaffold_392-1491911889:203781..203826	TCONS_00063540-exon-scaffold_392-1491911889:203781..203826	Clytia hemisphaerica	exon
TCONS_00063540-exon-scaffold_392-1491911889:203425..203575	TCONS_00063540-exon-scaffold_392-1491911889:203425..203575	Clytia hemisphaerica	exon
TCONS_00063540-exon-scaffold_392-1491911889:197563..198105	TCONS_00063540-exon-scaffold_392-1491911889:197563..198105	Clytia hemisphaerica	exon

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_392	supercontig	scaffold_392:197563..203826 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.540607	0.783191	0.515393	0.241252	0.064927	0	0	0.222486	0.0493241	0.162084	0	0	0	0	0	0	0	0	0	0	0.143468	0.448148	0	0	0	0

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00063540 vs. Swiss-Prot (Human)

BLAST of TCONS_00063540 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00063540 (transcript) - C. hemisphaerica