TCONS_00063538 (transcript) - C. hemisphaerica

Overview
NameTCONS_00063538
Unique NameTCONS_00063538
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length899

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00063538 ID=TCONS_00063538|Name=TCONS_00063538|organism=Clytia hemisphaerica|type=transcript|length=899bp
TATCTATTATGAATGAGAATACTAATACTTAGAATTGTATGCCTGGTAAA
TTTTAGAAGTTTTAGCTACTTGCTAATACTTTATTATGTTGAATATAAAA
TTGGCCCAGCATCATGCTTACATTGTCGCTGTCTGTCTTGCTGTATGAAC
GTTTTTGAAGAAgcagtgctttgtcaattcaagttcgttttggaaaaaaa
gttgaaaaaatcagTACACAATACAACAAGCAATATATGTATTTGTGGTC
AGGTAGCTCAGTTAGTAGAGCACTTGTCTTACCATCCAAGGTTTGTGAAT
TCGATCACCGCGAACTTTGACTTCTATTATGAAGTGTATATGCATTGAGA
ACAAACATTTAACTATTGCTGTATCGCTGGGTCTTCATGCCGCTTCAACT
TCTTGCTTTCTTTACAAGAGCAATTGTGCATCACCTGGTTTCTATTTTgg
tatttcatttgttttttttcttagttTAAAAGGTTGAAATCTAAAGTGAC
AGACATGGCTTGGCTGGTTTCTGataaatgattttataatgGATAGTTTT
GTGGACCATATTAAGCAcagttttcttcaaaatAACTATGTGGTTGCTGG
TTTGTCAAGCTTGGTTCTCCTTGTCATTACATTGCTGGTTTTTTGTCGTA
AAAAGAATGACTCAGCATCGAGTGGAAAATCCAATCCTGGCATGGTGTTT
CCGCCTACAGagtttttcagacaaaaacCAAGGTTTCGGAGAAGAGACAA
AGTCAGATTTTACACTACCAAAATGCTTAGGAAGGTATGTTTCAACTTGT
CTTTCTTGCTCAAATCAGAAGAAAGGAACAGAAAAAGATCGGGTTTTTCT
TGAACAGCAACCATTTAATGGATCTTCTCGATACTGAAAACCGATCAGC
Run BLAST on NCBI

protein sequence of TCONS_00063538-protein

>TCONS_00063538-protein ID=TCONS_00063538-protein|Name=TCONS_00063538-protein|organism=Clytia hemisphaerica|type=polypeptide|length=104bp
MDSFVDHIKHSFLQNNYVVAGLSSLVLLVITLLVFCRKKNDSASSGKSNP
GMVFPPTEFFRQKPRFRRRDKVRFYTTKMLRKVCFNLSFLLKSEERNRKR
SGFS
Run BLAST on NCBI

transcript from alignment at scaffold_392:114951..119755-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00063538 ID=TCONS_00063538|Name=TCONS_00063538|organism=Clytia hemisphaerica|type=transcript|length=4805bp|location=Sequence derived from alignment at scaffold_392:114951..119755- (Clytia hemisphaerica)
TATCTATTATGAATGAGAATACTAATACTTAGAATTGTATGCCTGGTAAA
TTTTAGAAGTTTTAGCTACTTGCTAATACTTTATTATGTTGAATATAAAA
TTGGCCCAGCATCATGCTTACATTGTCGCTGTCTGTCTTGCTGTATGAAC
GTTTTTGAAGAAGCAGTGCTTTGTCAATTCAAGTTCGTTTTGGAAAAAAA
GTTGAAAAAATCAGTACACAATACAACAAGCAATATATGTATTTGTGGTC
AGGTAGCTCAGTTAGTAGAGCACTTGTCTTACCATCCAAGGTTTGTGAAT
TCGATCACCGCGAACTTTGACTTCTATTATGAAGTGTATATGCATTGAGA
ACAAACATTTAACTATTGCTGTATCGCTGGGTCTTCATGCCGCTTCAACT
TCTTGCTTTCTTTACAAGAGCAATTGTGCATCACCTGGTTTCTATTTTGG
TATTTCATTTGTTTTTTTTCTTAGTTTAAAAGGTTGAAATCTAAAGTGAC
AGACATGGCTTGGCTGGTTTCTGATAAATGATTTTATAATGGATAGTTTT
GTGGACCATATTAAGCACAGTTTTCTTCAAAATGTAAGTATTTTTCTCAT
CATTGTCTTTTTTTTATTTGTTTTATAATAAAAAGCGAAAGTATTTTTTA
AACATTTTCTATATGTTTTTCTTTAAGTATACTGTTATACTTAAAAGAGA
CTTATTAATGTTGCCTTGTGGCATGTGCTTTTCTCAGAATTGGACCATGA
GAATTTTTCTGGACAAAAAACGGGTTTTTTGGACCTTTCAAACTGGACTG
TGTAAAATCAGGTTATTGCATTTTGTTCGGATATATTATAAAAAGTAAAT
CATAAGGTAAATGATGACTGAGGTAGATTCACTTTCTTATACAGAATTTT
ATACGTAATTTTATTTTCAATCTCTTTTTTAATTTGATTTTTGGACCTAC
CCTGGTAGGTAGAGGTCCTTTAAATTAACTGATGTTCGTCCGTCCTGTTC
GTCTGTTACCAGCTTTTCTCAGGATTGGCTCATTAGTTTTTTCTGATTTT
TTGCACAGTGATGCAAAATGGTGATTCCCAAAAAGTGACGGGAGCCAGAG
GAATTTTTTTTGGCCGTAAAAATTTCCTTATGTCATTTTTAGGGAAAAAG
AGCATTTCTCACGATTGGATTGGTATTTTTTTCTTATTTTTTGCATAGCG
ATATAGAATCGTACAGTAATATTTAATTATGGTGGAGCCCAGTTTTCAAA
AAAATAATTTTTTGGGCAAATTTGGGCCAAAAAGTTCACACCTTTTATCG
TCAATAGGGAAATCATGCTAAGATACCCCAGTATCTACGACTGTAAGTCA
TACGACTTTAACTATACTTCACAGGTCGATATTAATTTGAGCTGTGATAC
TCACGGTAATGTATTCAAGCTGCTCACTACACTTTTTTACTCTCTTGCTA
TTGTGTCCTATTTTTATCTGATTCTCATCATCAGGTAGGTCCATTCAGCA
TGTTGCTTGTCTTTATAAACATACCACCTAAAACCATCAGCATTATTCGT
GAATGATTCAATCATTTATTCTGATTTGGAATTTAATGTTTTTGTTGGCT
AACCANCAGGGGGGGGCACGCAGTTACTACAAGACAGTATGACACTTACT
ACCGTGGTGGTACTGTATTCAGAAGTTATGAAAACAGTTACTACNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGGGTGGTGC
CAAACACTAAAACTAGCACTTTTGGTGTAGTAAGTGCTTATATTTTAATT
CTTTTTAAAGAACTTTCAAAATTTTTCACAAAAAATGAATTTTTTTGTGA
AAAAATTCTTTGTTAAAAAAAATATTTTTGTTATAAATGGACGAAAAAAA
TTTTTGATTCACTGAAATTTTTCTCAGACCCAACTTTGAAATTATGCTTT
CCCTAATTATCATTAAAATGTTCTCAACAGCTGTTAACCAAGTAAATTAA
AAGAAAATCTAGCACAAAAATGGCTTTAGGTTGAAAAATAATTGCAATTT
AGCGTAATTTCGAGCATATTTTTGATGATATCACTCAAAAACAGGGGTGG
TACCTGGAAATCTTTTCTGAAAACAGTTACTACCAAGGTGTAGTAACTGC
AAAGGGTGGTGGTCCTGAAAAAAAGTGTTGAAAAAGCACTTACTACACAT
CATGTCTTGTAGTAACTGCGTGCCCCCCCCCTGTGCTATTTGTCCTATTT
TTATCTGATTCTCATCATCAGGTAGGTCCATTCAGCATGTTGCTTGTCTT
TATAAACATACCACCTAAAACCATCAGCATTATTCGTGAATGATTCAATC
ATTTATTCTGATTTGGAATTTAATGTTTTTGTTGGTTAACCATGGTAAGG
TCCATAAAGGATCATTTTTTTAAGATTAAATTTATGTAGCTCTGTTTATA
GTTTAATGAGATTAAATTTGTGTTGCTCCTCAGAACTATGTGGTTGCTGG
TTTGTCAAGCTTGGTTCTCCTTGTCATTACATTGCTGGTTTTTTGTCGTA
AAAAGAATGACTCAGGTACGCTTATTACTTTCATGCATTTTAGCCCCTTA
GCTCGTTTTATATTCATGCCTTTCTCTCTTTCGTTTTATACCTTATTGAG
TTATTTTTGGAGAATTTGACCTTTGGATTTTTGGCCAGTTCTATACTCCC
TTTGATTTTCAGTTACATTTGATTTGAAAGACCTCCCACAATTTTTTTCC
CAAGAAATTTTACTGTCCCGACCCCCGGATTTCAAGGTTTTTCGAGGGAA
TCATCATGGACAAAGAATATATGACCTCTTTGGTATTCNTGTCCCGACCC
CCGGATTTCAAGGCTTTTTGAGGGAATCATCATGGACAAAGAATATATGA
CCTCTTTGGTATTCGGGGATATACTTTTGGAATATCCCATAAAAATACCT
CAACAGTAACTTGAAGTGTGTAATAATTTAAATTATAATGCATAACAATA
AAATTAATTTCTAATTTTATAATTTGAAGACATGGTTACGTACAAGACAC
AAATTTCATTGTNAAAATTACTTTCTAATTTTATAATTTGAAGACATGGT
TACGTACAAGACACAAATTTCATTGTTTCAGTCATAAAAACAATAACTAA
GCATCTAAAAATTACATTGTAGTGAAAAAAGGATCAAGAACTTTGACCAG
CTAAAACAATCGTAAATTTGTTAAAAGATTACCTTACCATAGCCATTACA
GGTTCTTACAGGTTCTTAAACCAACATTTCAAGAGGAAACTTCAGATTTT
ATGGCATAGAAGGTGAATTAATGAAATGATTAAAATTAAAGCTGTGAAAA
GTCATTTTCAAGATTTTATTTTATTTTTCAGTTAAGAAACTTTTTTTTTT
AGAAACAAATTTATTGTTGCCTGCAGTTCTCGTTCTTAATTTAATTTAAT
TCATACTCATTATTACAGTGGGACCACTGGGGGAGACAATAGCTGAGCTG
CCTAAAAGCTCATTCGGTATTCCATGGCAAACCACTTAAAATACTAGCTA
TTATTATTAGTATTGTTATTATATACGCGAATATAACAGAAATCTGATAA
TTCGAGAATGATGCGTTTGTGACGACAGTGAAAAAGGTACGATTCTCTCA
AAATTCAAAGAAGAAGTTGAGAAAGTTATTTCTGGCAAATTTCAAAATAT
GAAGATGAAAAATAAAGAAGAAGTCATTGATTTTAAAAAATTCACTAATT
TTCAGCATTGATTTTAGCAGTGGATCTTCATGGAAAAAACGGACCCAGCA
ATTTTGTTTTTTGTTCCTACAAGTGGAAATTTTATGTTAACGTCATAAAA
TGTTATTTTCTTCCTGGAATTTAGTCTTTTGATGAAGAACATTTTCTACC
AATTTTCATGGCCACAGCTCTCCTAGATCAAAAATAATCGTGGGTGGTAT
GCTAATAAAATACTTCCTGGAGCTATAAAAATCATTTGGAGTTAAAAAAG
GTTGAATATGTTAGCCTTAAAACGCTAGCCGTTCAAAAGTGATCATTGGC
CAAAGTTTGCTAACTGTTGCCCTCCATACTCGTAAACTGTAAGATTTGAT
TTGGTTTAATCTCTTTTAAGGTTTACGACTGATCGTAAAAAAAGCGTATT
TAAAATTTGGGTATTTTGCATATCACAAATATTTTAAAGCCTCCTGATTT
TATCTAAATATGATTATTTCCCTGAAAATATATATTGCATCCGAAGTTAT
AGCCTCTAAAAGCTAGCACTTGGAGTTGAAAAAACTCTGTTTTGGTGTTT
ATCCACCTAAATGGGCCATTTTCTGGCACGTTTTTATTTCAATACAATAG
TTCTGTGCGAAAAGTAATTATATAAATAACTAAAATCCTTGTGTGAAAAC
GGCTACAGTTCATCTTCATTTTTCGAAAAAAATCTGAACTGTATAATATA
TTATTTCAGAATTGAAACTTTTGTTGAAAAATAGCAATCAAATCATAAAT
TAGTGAACACTTAAAGCGAATGGACTTGATTTAATATTAAGGTATATTTC
GATTTTCGAATGACTTTCTAGCATCGAGTGGAAAATCCAATCCTGGCATG
GTGTTTCCGCCTACAGAGTTTTTCAGACAAAAACCAAGGTTTCGGAGAAG
AGACAAAGTCAGATTTTACACTACCAAAATGCTTAGGAAGGTATGTTTCA
ACTTGTCTTTCTTGCTCAAATCAGAAGAAAGGAACAGAAAAAGATCGGGT
TTTTCTTGAACAGCAACCATTTAATGGATCTTCTCGATACTGAAAACCGA
TCAGC

Coding sequence (CDS) from alignment at scaffold_392:114951..119755-

>TCONS_00063538 ID=TCONS_00063538|Name=TCONS_00063538|organism=Clytia hemisphaerica|type=CDS|length=945bp|location=Sequence derived from alignment at scaffold_392:114951..119755- (Clytia hemisphaerica)
CATCGAGTGGAAAATCCAATCCTGGCATGGTGTTTCCGCCTACAGAGTTT
TTCAGACAAAAACCAAGGTTTCGGAGAAGAGACAAAGTCAGATTTTACAC
TACCAAAATGCTTAGGAAGGTATGTTTCAACTTGTCTTTCTTGCTCAAAT
CAGAAGAAAGGAACAGAAAAAGATCGGGTTTTTCTTGAAACTATGTGGTT
GCTGGTTTGTCAAGCTTGGTTCTCCTTGTCATTACATTGCTGGTTTTTTG
TCGTAAAAAGAATGACTCAGATGGATAGTTTTGTGGACCATATTAAGCAC
AGTTTTCTTCAAAATCATCGAGTGGAAAATCCAATCCTGGCATGGTGTTT
CCGCCTACAGAGTTTTTCAGACAAAAACCAAGGTTTCGGAGAAGAGACAA
AGTCAGATTTTACACTACCAAAATGCTTAGGAAGGTATGTTTCAACTTGT
CTTTCTTGCTCAAATCAGAAGAAAGGAACAGAAAAAGATCGGGTTTTTCT
TGAAACTATGTGGTTGCTGGTTTGTCAAGCTTGGTTCTCCTTGTCATTAC
ATTGCTGGTTTTTTGTCGTAAAAAGAATGACTCAGATGGATAGTTTTGTG
GACCATATTAAGCACAGTTTTCTTCAAAATCATCGAGTGGAAAATCCAAT
CCTGGCATGGTGTTTCCGCCTACAGAGTTTTTCAGACAAAAACCAAGGTT
TCGGAGAAGAGACAAAGTCAGATTTTACACTACCAAAATGCTTAGGAAGG
TATGTTTCAACTTGTCTTTCTTGCTCAAATCAGAAGAAAGGAACAGAAAA
AGATCGGGTTTTTCTTGAAACTATGTGGTTGCTGGTTTGTCAAGCTTGGT
TCTCCTTGTCATTACATTGCTGGTTTTTTGTCGTAAAAAGAATGACTCAG
ATGGATAGTTTTGTGGACCATATTAAGCACAGTTTTCTTCAAAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039828XLOC_039828Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063538-proteinTCONS_00063538-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063538-exon-scaffold_392-1575043694:119173..119755TCONS_00063538-exon-scaffold_392-1575043694:119173..119755Clytia hemisphaericaexon
TCONS_00063538-exon-scaffold_392-1575043694:117191..117272TCONS_00063538-exon-scaffold_392-1575043694:117191..117272Clytia hemisphaericaexon
TCONS_00063538-exon-scaffold_392-1575043694:114951..115184TCONS_00063538-exon-scaffold_392-1575043694:114951..115184Clytia hemisphaericaexon
TCONS_00063538-exon-scaffold_392-1510915933:119173..119755TCONS_00063538-exon-scaffold_392-1510915933:119173..119755Clytia hemisphaericaexon
TCONS_00063538-exon-scaffold_392-1510915933:117191..117272TCONS_00063538-exon-scaffold_392-1510915933:117191..117272Clytia hemisphaericaexon
TCONS_00063538-exon-scaffold_392-1510915933:114951..115184TCONS_00063538-exon-scaffold_392-1510915933:114951..115184Clytia hemisphaericaexon
TCONS_00063538-exon-scaffold_392-1491911889:119173..119755TCONS_00063538-exon-scaffold_392-1491911889:119173..119755Clytia hemisphaericaexon
TCONS_00063538-exon-scaffold_392-1491911889:117191..117272TCONS_00063538-exon-scaffold_392-1491911889:117191..117272Clytia hemisphaericaexon
TCONS_00063538-exon-scaffold_392-1491911889:114951..115184TCONS_00063538-exon-scaffold_392-1491911889:114951..115184Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_392supercontigscaffold_392:114951..119755 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.13644	3.05852	2.21225	2.7339	6.10181	4.49298	4.62733	5.38412	2.4697	4.18617	5.20923	4.07497	4.03511	4.22601	2.80284	5.10713	3.47387	3.75842	1.69438	3.37451	3.67875	3.419	2.00443	3.37664	7.17654	7.34099	2.11509	1.88107	2.62517	3.54679
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00063538 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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