TCONS_00063531 (transcript) - C. hemisphaerica

Overview
NameTCONS_00063531
Unique NameTCONS_00063531
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length424

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00063531 ID=TCONS_00063531|Name=TCONS_00063531|organism=Clytia hemisphaerica|type=transcript|length=424bp
ATGTCAGATTTTGCTCGATTGGCTCGTGTGTTGACTGGAACGGCAGTTGG
CCTTGTCTTGGGTGGCGGAGGTGCCAGaGGTATTTCACATGTTGGTATCA
TCAAAAGAATGTTAGAAGCAGGAATACCGATTGACCGTGTGGGAGGTACG
AGCATGGGTGCCTTTATTGGTGCTATTTATGCAGAGCATGGATCTATTGT
GAGAACCACTCAACGTGCCAGAGAGGGCTGTTTGaaaatggCATCAATGT
GGAGGAAACTGCTCGATATGACTTACCCTTACACCTCGCTTTTTACCGgt
aagtaagtgtcatactTGCGCTAGGGGCTTGTCTTTGGTACGATTGTGTT
TTGacctaggctacgtcatatcttccttcgtttcgagcgtaaaactccta
ctcttcgggctgtgagcactgctc
Run BLAST on NCBI

transcript from alignment at scaffold_392:81749..88350-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00063531 ID=TCONS_00063531|Name=TCONS_00063531|organism=Clytia hemisphaerica|type=transcript|length=6602bp|location=Sequence derived from alignment at scaffold_392:81749..88350- (Clytia hemisphaerica)
ATGTCAGATTTTGCTCGATTGGCTCGTGTGTTGACTGGAACGGCAGTTGG
CCTTGTCTTGGGTGGCGGAGGTGCCAGGTAGAGTNGTCTACCCTTCGAAC
CTACTTTAGAGCACTTACAAATCGATTGTGGTTTTGTGCCAAGTATTTTG
TCCCTGATTGTACCTTTAGGGGTTTGAGACATTAAGAAAAAATGAGATGT
ATCGAAAAGTTACTTTGTATTCCGTTTTAGGTTCGATGCCCAAGAAGAGT
CTTCAAAAGAAAACTATTGTCAGCCCGTGTAAGTGATCCATTATTCGATT
GAAAATCATAACTCGAATGTTCTTTGAGCTTTCTTTTGTTTGAGTGATTT
CTTATTTTCTTCATCTTTACTATATTTTAGTACCATGACGACCCAAACTA
TGAGGGACCAGATAGGTATAATTTTTATCGCACTTAGATTTAAAGAAAGA
TGATCTTTGAAGTTTTTTCTTCGTTTCTAGTTTTCTAAGTTTATAATTAA
TTCCCAATCGACTTTAGCAAAGATCTGCTACGTTGTAACAAAAATCTTGT
CGATTATTCAAATTTTGTGTATTTGACCAAATTAAAATGATTGAGCCACT
CACTTACTTGTGATACTTCTCATTTGATCGCAGGATGTCAGATTTTGCTC
GATTGGCTCGTGTGTTGACTGGAACGGCAGTTGGCCTTGTCTTGGGTGGC
GGAGGTGCCAGGTAGAGTTGAACCTTGTAATCAACTGATTTCTTTCAAAA
AAGCCAAAAAAAGCTGAGGGTTAAACCTCAAACCTTCAACGTATGCCTAC
TATATACTTAAATGAATTTGAATTTTTCAGAAAACTTAGAAATAGTTAAT
GCATTTTTTCGAGAATACTTCTGACACTCCGTTCAAATTCAAAAAACTCC
CTAATCGTCCCAATATAAACTTCATAAAAACTTTCCAGCATAACATCCGA
GGGTAGTATTTTTGTCAACAAAATATGTACGTTGCAATACCTGTTTATTT
GACAAAGAACCCCTGTTTTGCCTAAACTTGTTACCCCTTCGTATATTACC
CCTTCCATAATATAGGCGGGAGTGCTAACTTCATCGGAAAGTTTGAAACT
TATTTAAAGTTGAGCAGATTTCTCTACAGCTTGCTCTTTAGGAAATACCC
ACTGCCATTTTGAAATAATAACTGTCCGCTTCATTTTCTTTTGTTACAGA
GGTATTTCACATGTTGGTATCATCAAAAGAATGTTAGAAGCAGGTCAGTA
CCTACGTTATCTCTTCCTTTGCAAAGGCTACCTTTGGTAACCTTTCACCT
AAAATTTTTGAATATTTTCTGTCAGTCCGTAGCGCCGGACGCTATTTACA
GAAAAAAAAGATTCCCAATACATTAATTGGTTTCCTTTCTGAATATCGGG
GAAATGTAGCGTGATTTTTTGTTTTATTTAACTAATTTTCATGGTGTCGG
CTTTTGAAACTAAATAAACCAGCTGCGCTGGAAGGTCGCCTAAATGGAAT
AGCTTTTTAAAGAGCTTAAAAGTTTGAAAAAAGTATACGACAAAAAGCTT
AACAGTGTAACACGTGATTTGCGAATGTGAAAAATCTCGCATTAATGTCA
AAATGACTGAAGTTGATTTTAAGTTAATGTTAGAAAAGATAAAATGAGAT
TGGAATCAACCTGAAAAATATTCTTCAGAAACAAATACGTAATATAATAT
TATTTTTGTCATCCCTAAAATCTTAAAAGTTTTCAGAAAGTTATCATTTT
TTAAAAGTGACATTAGGGATATAGGTGAAAATAGCCTAAATTTTTTCTGA
AGAGATAAAAAAACCGTTCGAGTTAAGGACACATTCAAGTTATAGGGTTT
GAGTTTGAAGACGGTTACTTAATCATATCATGTTTAACTTATATCAATGA
ATGTTTCTTGTTTGTACAATAAAAAATTGTTGCTAGAAAGTTTTAATAAA
TTATTATAGTAAATCTAATAATACAGTTGAAGTAATCTTTTAACAAAAGT
AAAAAATTTGGAGGGGATTTAATATGGCTGCGAGCTTGAAAAATTAAATT
TGACGGGAATTTATTTGCCTTAAAATAGATAACATTTGGGGGGAGAAAAC
AATAATCTAAATTTGGCGTCGAATGGCAGTAAAAGTTACATTTGGATGAT
TTTGGCCCAATCCACCAAATTAAATTCCCGCTAAATTTAATTTTCAAGTT
AACCACCAAATTAAAAGGACCCTCCAGGCACACTGGAAACTTCCGGAGTT
TTACAGACCAGCTAAAAAAACACTATTTTTATCTCTGGAAAGCTTAGGAG
CTCTTCCCGGCTGGAGCAAAGTGATTCTTAACACAGCTCCAGAGTTCCGG
TGTAGATCAATTGCCGAAATACGAGAAAAACGGCACTTTTTGCTCCGGAC
GTTTCTGGAGCGTCGGGAGGGTCCTAAATTAAATTCCCTTTGAAAAAACT
TTTTCGGCCATCCGCCAAATTAAATTCCCACCAAAATTTCTCCTTTTAAT
GTAGGTGCAATGTCACATTGTGTAATTAAAACTCCAGCAAATATCTTGAT
AACTCCATGTTTCAATGGATGCAAGGAGAACAACAATAATAATCAAAAGG
GCCATTCCAGAGAAAGGATACGTAACGTCACTCTCATTTTTACTAGATGC
CAGTGGGGAGACAGTTGTTCAGCCGGGCATAAACTCCAATAATTGCAGTT
GACAACTGGACAATATCTTGAAATGGCCCAAAAAGGAGCCTGAAATAAAA
GAAATAAACTGGCTGCCAAACAGCCGACAGTTGTATGTTTGTTCAAGAAA
TTTTAAGTCAATACTTGCAATGGTTACACAAAATTACTCGTCTTGGAACG
GTGAATCATCAATCAAATCTTGCTTAAGCGTTTAGGTGATATATAAATGT
TCTTTTGCTTCACTTCAAATCTGCTAATTGTAGCTAAGAAATTCATGGTA
TGCAATTGATACATTGGTTAGGTTGCCATATGCAGTGAGTGATCTTGGTT
GGGACATGCTATCAACTGTTATCATAGATTTCGAGTAATTGAAACAATAA
TAAACTTATTCTTATCTAATCTATCTTATTTTTCTTGTCAACACAAACAC
ATCCATCTTCCAAAACCAAATGTTTAAACCTCAAAAGTGATTCTAGTGAA
AGGAGGTTTGTTTTCAACAACATCACGAGTGTGGTAGTTTGAATGGAATA
ATATCAATGAAGAACTATAAATTTCAATTTCAATTTTGAAGAATCATTAT
TGTAGTTGTAGATTTAAAATCTACATCAAGAATTATCTGCTGCTTGCACT
TGTAGTAGAAACTTTCGACAACTTTCACGAGGCTTTTAATTATCTCCGTT
ATTTAGATTTCATAAAACAAGTGTGCTAACTACTACGGAGCTAATTAGAA
TCTACACACTGCAAATACTGTCTGATAAGTTTGCGTGGCGCAATATAACA
GAGATAAAACGGCTTATGCAAGAATTTACGCGGGAAATAATTTCCCGATT
TACCGAACATTTACCGAATCGGGCGACCAAACTTTCACAAAAGAGTCGTA
TGGAGAAAACACCGAATTTAAAGGTCTCCTTCACTTGCGTGAGGCGACCA
AAAAATGTAAAGGGAAATCTGTATTTACACTTGTCTATCAAAGGTAACGA
ATTGCTCAATCGATTAATAATCAATTTTATCGGCGATCCAAAAAATATCA
GTAATCTGATTGGTTAAAAAGAGTACAATATATCTTGTATTTTACATGTA
AAAATATAAATTGACGAAAAGATGTTGTTGCATTGTAGCGGTAGCAGCAA
TCTAACGTCACTTTTCTACAAGAGTGCCCAGCGCTTTTTTCCAACAAGAA
ATTATATTATATTATATTATATTATATTAGAGTTGTCATGCAGCAAAGGA
AGGAATGAGCAAATGAAAGTGGATGCTTAAAGGGCATCATCTCCTAACAT
TGCTTACACAGCAACTTTTGTTCTCTTTTTTCCGCGCCCATGCGAGTGCA
AAAAAAAATTAGAAATTCTACTGTTAATTCCGCCGTGTCACCATTAAGGC
ACGTTCTTTCTATATCACCAAAAGAAATATCTATTAAAGGTCCTCTTTTA
CTCTAAAAGCTTTAAATGTTTTTGTGGATGAGTACTTAATGTATTAATTA
ATCCCATCTCTGAATCCCAGTCAAGAAACTTTAAAGGTTTCATTATTTGA
TTAAGTGGCCAGGGGATAGCTTAAGATATGAAATGCATTTAAAAGTTTTT
TCAGTTACTTGATTTTGATTTAGCCCGCCCTTTTTGGCTAGCTTCTCTGT
TATGGGCTATTGTACAATTTTTGGACCTACCTAAGGTAGTCCTTTAAATT
AACCCTTGTCCGTTCGTTCGTTCGTTCGTTCGTTCGTTCGTTCGTTCGTC
TGTTACCAGCTTTTCTCGGGATCAGCTCATTAGTTTTTTCTAATTTTTTG
CACAATGATGCAAAATGGCAATGCCCAAAATGTGACGGAGCCCGATTTTC
GAAAAAAAAAATTTTTCCGGCCGAAAATTGCGGAAATATGCCGAAAAAAC
TGATTTTTCGGCATTTTCTCGAGATTTCATCATTAGTTTTTTCAGATTTT
TTGCTCAAAGATGCGTATTAACAATGCCCAAAACATGGCCTAGTCCGATT
CTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNAGAAAAAATTTTTTCCGGCCGAAAATGC
CGGAAATCGCCGTTTTTCTGGATTTTCATTGGACTTTTTCCATATAATTG
GTTGTTTTTCATTCAAAAACATTATCAATAGCAATGCCCACCATCAAGCA
TGTTTCAATTTTCAATAAAATTGATTTTTGAAGCCGGAACTTTCTAAAAA
TCGCTGGAACAGCCGATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNTTTTCGCCGGAAAAACTGTATTTCTTGAATTTCTTGAGCTGT
ACTTTATATTTTTTCATGAAATTTTGCACACTGATGCAAAATGTCAATAC
CTAAATTGTGATCGAGCCCGATTTTCGAAAATAATTCAATTTCGGCTGAA
AATGCCTGAAATATGCCGGAAAAACTGGTTATTTGGCATTTTCTCGAGAT
TTTATCATTAGTTTTTGCTGATTTTTTGCTCAAAGATGCGTATTTGCAAT
GCTCAAAACATGGCCGAGTTCGATTTTTGAGAAATTGCAGATTTTCATTG
GATTTTTTCCTTGTATTTCTATGTTTTTCACACAAAAACATTATTGATAA
CAATGCTCACCATCAAGCATGATTTAATTGTCAATAAAACTGATTTTTGC
AACCACAACTTCCTATTTATCATTTCCCTACAACCCTTCCCTCTCCCCCC
ATCAACAATCAATGATGAATTTATTGCGTTGTGTATTTTCGCTAAACGCT
ATATTTTCTGACTGATTTTTTTCATTTTTCTTTTCGCATTGCTTTCTAAC
TTTCATCATCAGGTAGGTCCATTCAGCGTGTTGCTTGTTAATCCTTCAAT
TGAAAATCCTTCAACTATTAAACCCTTTCAACATCGTAACTGACTTCCCA
TTCTCGGTTAGGTTTACTTTTATTTCGATTGCGCTTAAAAATCTCAACTG
AATTTTTTAATGATAATTGGTCTTTCTACTTTGTGTTTAAGGTCCCACTA
TGATTGGCAGTAGAACGACAACAAGTTGTTATTTTTTAATAAAGTTTGAA
TTAGAATCCGATTTTTTGAGTAGAGTCACAATCAAAAAGAAAAATTGAAA
AAAATGGGAAGATCAATTACTTTCAACATTGTGCTATAATTTCCTTTTTC
TCTGTTCACGTTCAGGANAGATCAATTACTTTCAAGATTGTGCTATAATT
TCCTTTTTCTCTGTTCACGTTCAGGAATACCGATTGACCGTGTGGGAGGT
ACGAGCATGGGTGCCTTTATTGGTGCTATTTATGCAGAGCATGGATCTAT
TGTGAGAACCACTCAACGTGCCAGAGAGGGCTGTTTGGTAAGCTTTTTTT
ATACCGTTACTTTTAACCACCTGGGAAGCTAGCTTTCTCTTTCTTCTGAT
GTCACCTTTTTTTTTATCATTTTGCATTGTGTTTTCAGAAAATGGCATCA
ATGTGGAGGAAACTGCTCGATATGACTTACCCTTACACCTCGCTTTTTAC
CGGTAAGTAAGTTTCATACTTGCGCTAGGGGCTTGTCTNATCATTTTGCA
TTTTGTTTTCAGAAAATGGCATCAATGTGGAGGAAACTGCTCGATATGAC
TTACCCTTACACCTCGCTTTTTACCGGTAAGTAAGTGTCATACTTGCGCT
AGGGGCTTGTCTTTGGTACGATTGTGTTTTGACCTAGGCTACGTCATATC
TTCCTTCGTTTCGAGCGTAAAACTCCTACTCTTCGGGCTGTGAGCACTGC
TC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039826XLOC_039826Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063531-exon-scaffold_392-1575043694:88274..88350TCONS_00063531-exon-scaffold_392-1575043694:88274..88350Clytia hemisphaericaexon
TCONS_00063531-exon-scaffold_392-1575043694:87108..87151TCONS_00063531-exon-scaffold_392-1575043694:87108..87151Clytia hemisphaericaexon
TCONS_00063531-exon-scaffold_392-1575043694:82164..82276TCONS_00063531-exon-scaffold_392-1575043694:82164..82276Clytia hemisphaericaexon
TCONS_00063531-exon-scaffold_392-1575043694:81749..81938TCONS_00063531-exon-scaffold_392-1575043694:81749..81938Clytia hemisphaericaexon
TCONS_00063531-exon-scaffold_392-1510915933:88274..88350TCONS_00063531-exon-scaffold_392-1510915933:88274..88350Clytia hemisphaericaexon
TCONS_00063531-exon-scaffold_392-1510915933:87108..87151TCONS_00063531-exon-scaffold_392-1510915933:87108..87151Clytia hemisphaericaexon
TCONS_00063531-exon-scaffold_392-1510915933:82164..82276TCONS_00063531-exon-scaffold_392-1510915933:82164..82276Clytia hemisphaericaexon
TCONS_00063531-exon-scaffold_392-1510915933:81749..81938TCONS_00063531-exon-scaffold_392-1510915933:81749..81938Clytia hemisphaericaexon
TCONS_00063531-exon-scaffold_392-1491911889:88274..88350TCONS_00063531-exon-scaffold_392-1491911889:88274..88350Clytia hemisphaericaexon
TCONS_00063531-exon-scaffold_392-1491911889:87108..87151TCONS_00063531-exon-scaffold_392-1491911889:87108..87151Clytia hemisphaericaexon
TCONS_00063531-exon-scaffold_392-1491911889:82164..82276TCONS_00063531-exon-scaffold_392-1491911889:82164..82276Clytia hemisphaericaexon
TCONS_00063531-exon-scaffold_392-1491911889:81749..81938TCONS_00063531-exon-scaffold_392-1491911889:81749..81938Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_392supercontigscaffold_392:81749..88350 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.22765	5.25315	0.609997	2.08876	2.38259	0	0	0.000615216	0	7.67894	0.973774	4.95757	0	6.85368	0.000969369	4.06422	6.59458	3.06329e-07	0	8.33929	8.5862	6.05551	4.64131	5.55501	0	0.673648	0.000523488	0.00582428	6.26491	0.0178627
Blast
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BLAST of TCONS_00063531 vs. Swiss-Prot (Human)
Match: PLPL6 (Neuropathy target esterase OS=Homo sapiens GN=PNPLA6 PE=1 SV=2)

HSP 1 Score: 97.4413 bits (241), Expect = 1.507e-23
Identity = 63/99 (63.64%), Postives = 78/99 (78.79%), Query Frame = 1 
Query:    4 SDFARLAXXXXXXXXXXXXXXXXXXXISHVGIIKRMLEAGIPIDRVGGTSMGAFIGAIYAEHGSIVRTTQRAREGCLKMASMWRKLLDMTYPYTSLFTG 300
            SDF+RLARVLTG  + LVLGGGGARG SH+G++K + EAG+P+D VGGTS+G+FIGA+YAE  S  RT QRARE    M S+   +LD+TYP TS+FTG
Sbjct:  956 SDFSRLARVLTGNTIALVLGGGGARGCSHIGVLKALEEAGVPVDLVGGTSIGSFIGALYAEERSASRTKQRAREWAKSMTSVLEPVLDLTYPVTSMFTG 1054
The following BLAST results are available for this feature:
BLAST of TCONS_00063531 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PLPL61.507e-2363.64Neuropathy target esterase OS=Homo sapiens GN=PNPL... [more]
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