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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00063520 ID=TCONS_00063520|Name=TCONS_00063520|organism=Clytia hemisphaerica|type=transcript|length=2434bp
ttaaaacctttttaattgttcttttaaaactttttcttttatttcactGT
CATCTTATTCATCTTAAGGCatacaaaattaaaacaataGGAATGTAGCT
AAAATTATTACCCATACACCTTTGTTCCCCTTttaaaaatccaacaaaaa
GAGCGAGTCAGTGGATATGGGATATTTTAATCCCTCCGCGTAGAAGAGCT
TTTATTGTTCCTCTATCAAAAGCTCACTCAGTAGGAGAgatctctttttt
ttctcaagcgGCTCggcttttgttttaaatggaaAACCGTTTAAATTGGT
TGCTTATGATCCGAACACACTCAGTTTATACAGATAACACTCTCGGGAAA
CACCagcgtttttttaagaatacacATTATTTATCGCACTACGACTGCAT
TCGAGCACGTGAGCTAAATTGTCAAAAACTGCATCTTGTTGCATCTTGAG
TACTACTGTAAAAACCAAGTCTTATtggcaaacaaaagaaaatcattaGC
ATTATTTAGTTTTTTGACGTTCCGGCACGAGCGAGCACAGATCTTTCATC
AACACATTCGATCATCGCACATCAACAAGCTACCACCATTGGTTTGTTAC
ACGGCAACGACCACTTATTTGAACAACATAGAGGAGGAGGCACGTGTTCG
GTGTACGGAGGAATGACAATGCCTGAACGATCGGTTGAAAGCCCTATCGA
CAGTCAAAACATGAAACCTGGAACACCACCCAAGAGACGTCGTGAACGAA
CTACCTTCACTAAAGCACAACTCGATGTATTAGAAGATCTCTTTGGCAAA
ACAATGTACCCTGATGTTTTCATGAGAGAAGAAGTTGCCAAAAAAATCAG
TCTGGCTGAAGCTCGAGTACAGGTCTGGTTCAAAAACAGACGTGCCAAAT
TTCGTCGGTCACGAGAAAGCCCAGGACGACACTTCGATCACACCAAATTC
TTACAACGTGATAAATTCTTACAAGACGATTTGGTTCGTTCATTCAAATC
AGGACCAAGCAGTTTCTTACCACCATATCAATATCAAAACCCGTTATGGA
AATACCCACCACCTGCAACAGAGCACAGCCCAACATACGGTACGTCACAG
GTAGTAGACGATTCTTTTTATAGACAATCAACGAACGGTTATAACTCAGT
TTCGCCTTACACCGACTACCCTTCGTCTTACTCCACTTCACCACGTCAAC
AATATTTCTCCACACAATACTACAGTCCACCCGGTGGTAACCATGACTAC
AACTCATGCGCACCAAGCACCACTACATCGAACACTGTACCTAGTATGTC
CTTTTCACCTCACGAAAACACAACGAAAACAGATCTCAATTTACCGAACA
CTTTTCAATGGAGCGGCAGTGGTGGCACTCCGCAATACGGAATGACAGCC
GGTGGATCAAACATATAAACATTCAGGAGTCGTCTTTGACAACTCAAAAC
TAAAAACGAGAATACAAAACTAAAATATGGGGGACCATTCTCTTGACACA
GACGCGCAAACGGCAATCAGAATCAACCATCATATGGGTTGGAGACTTGG
ATAATCCTGGGAAAAGAATGCCGCACTCAAGCGGGTTTTTGCTCTTCGAT
TATTCTTCGTATTACTGGTCGAGCAGTCAGTCGGTATTTTACTGACAGAG
GTATCTAGTTCCGATTTTAATTACTCGAAGGATGAAACTTTTAAAGTTTT
TATAGAAAATGTAAAAAACTAACATCAGATAATTGTGTAATTGAGAATGG
AACGCCCGTCTACCGGATGGAGTTGGAATGCAACAGGAACATTATGAAAA
GAAGAAGATTTGTTTTCTTTCTTCGAAGAACAAAGAAAGAGATTCAAACT
TGATACATTTTCATAAATAAACAAAAACAACGTCTTGAACTATTTTCCCT
AGAAACAAACTAAAAATACTTGTTTTATTTTTACGTATTATTTGAACCAT
ATTTTTAAATACTTTTATCCAATTTTTTTTTATTTTGGGAATTGATGACC
AATTATTAAGTTGAACCCTGAAATCACCAAGTTTTTAGTTTTCGATTTTT
ACAGGTTTTTAATGAGATCTTTTATTTTCTTTCGTGTACATATATACTCA
TGACATTTATTTTTCTTCTAAGAGCATCGTTTTATTTTACATTTATTTTT
TTAAGTTGTATTTTTTTCTCGTCCTTATTTTTCTCATATATACTTTCATT
CGATATTTCTTTTTAAGGAAACAATTTTAATGTAGCTAGGGAAATAATTC
TAGGTGGCTGCTGTCTTGACGACTGTCAGCTTTTAATAGCAATTTATTTG
TAATGTTGTACATAAAATGTGTATAATGCTAGTGGGTTTATAACATGATG
ATAATAGTTACATATTGAAAAAAGAACTCATTCTATTGTATACACAGaca
attttaattcaaaagaccgaacaaataaaaacaa Run BLAST on NCBI transcript from alignment at scaffold_391:81782..87732- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00063520 ID=TCONS_00063520|Name=TCONS_00063520|organism=Clytia hemisphaerica|type=transcript|length=5951bp|location=Sequence derived from alignment at scaffold_391:81782..87732- (Clytia hemisphaerica)
TTAAAACCTTTTTAATTGTTCTTTTAAAACTTTTTCTTTTATTTCACTGT
CATCTTATTCATCTTAAGGCATACAAAATTAAAACAATAGGAATGTAGCT
AAAATTATTACCCATACACCTTTGTTCCCCTTTTAAAAATCCAACAAAAA
GAGCGAGTCAGTGGATATGGGATATTTTAATCCCTCCGCGTAGAAGAGCT
TTTATTGTTCCTCTATCAAAAGCTCACTCAGTAGGAGAGATCTCTTTTTT
TTCTCAAGCGGCTCGGCTTTTGTTTTAAATGGAAAACCGTTTAAATTGGT
TGCTTATGATCCGAACACACTCAGTTTATACAGATAACACTCTCGGGAAA
CACCAGCGTTTTTTTAAGAATACACATTATTTATCGCACTACGACTGCAT
TCGAGCACGTGAGCTAAATTGTCAAAAACTGCATCTTGTTGCATCTTGAG
TACTACTGTAAAAACCAAGTCTTATTGGCAAACAAAAGAAAATCATTAGC
ATTATTTAGTTTTTTGGTAAGTCAATATTATTTTCGTAATCTTTCTCTTT
TTCGGGACGAAAGGGTCCTTCTAGTAATAGGGTTCTCTTTATTGCTTGCA
TCTTCTTAAAAGGCTTGTTTCGAACAAACTAAAGGTATTGTAATGAGTTG
GAAATAGTTTTCTTTTTGGCTTATATGTTGCAGTTTTTTTTATTGGTCGA
ATGAAAGGGGCTTATTTAGAAAGGTGAGCAAATTACCGGTTGTTGTTTTG
AAAAGTTATAAAGACTTCTTAATCACCTTACTATGCAGAAGTATCCGCCT
TTACGGAAAAGTAAGCTTGCAAAATCTCTTTTATCTTTTAACAAATTGGT
ACTACTGTAAGTCAGCTGAACAGACTTTAGAAGTTTACTTTCAATACAAA
AGTAGGCGACAACACTGTTTAAGCTTTAAAAACTTTTTCTGTAACAATCT
GTTTTTATTATCCACATTAAATCGAGTTTTAAATTATAAAGCCTTTAGGA
TATTTAATTTGCTTAGAGGGTCATTAATGAGTATTTGTAATATGGTTCCG
GATTCGATAGTCTGCAAGAAGATTTTCACATTTTTACGCATAGAGACATG
ATTGATAAAAAATTCTGACCTATAATATTTTCTGAGAAAAAAAACCAAAG
TACAAATCTAGTGTAATTGAAGTTGTTCTTATTGCATCTATTGAAACGTT
TCATTTGATCATTGATGGTTAAACTACCTTCTAAAAACGTGTGAAAACCA
CTTCTTTCTATGATACATTTCTTATTTAGACAGAAAAAATGTTTTCGAGG
GACAAAAGTGAGCGAGAAGTATCGATGACATTTTACTTTTTACAAAACAC
ATTTCATCGCTTCATTGTTACGTAAAAGTCGCAAAAATATTGTTAAGAAT
TTCTTTTAATTTCGGAATGATTTCAGTGCAAGCGAAAATCATACGAAAAA
ATCACCACCGCCCAAACTAAAATTCAGAGAAATATTTGAATCGTATTGTG
TATTGTTTCAAATTAATAATATTCTAACATCGTTATGTTGTTTAGACGTT
CCGGCACGAGCGAGCACAGATCTTTCATCAACACATTCGATCATCGCACA
TCAACAAGCTACCACCATTGGTTTGTTACACGGCAACGACCACTTATTTG
AACAACATAGAGGAGGAGGCACGTGTTCGGTGTACGGAGGAATGACAATG
CCTGAACGATCGGTTGAAAGCCCTATCGACAGTCAAAACATGAAACCTGG
AAGTAAGTTACTTTTTGTTCAAAGTTAACATATCTATAACATTCTAAAGC
TACAGCATGTAGAAAGGCCCAACTAAGTTGTCATTAACCTTTTGGAGCAA
TGTGCATAGAAAGTCTCGATGTTTTAATGAAGATCATGTCCAAAGACTAA
GTTACATTACATTCATAAGACACTATCCTTATCTTATTATCAATCTCTTA
ATTGGTTAGAGGATCATCGAAGCTTTCATTAAAACTAACCATTTTATGGA
CTAAATAAAGGGAAGAGGAAGAGAGTCAGGAAACTAACAAAATGTTTTAA
AAATGAATTGATATATAAAATACGTCATTTGCGTTAATCTTGTCAAATTC
ATGAAACAGGGGCCGATAAATGCACTCGCTTTTCACNGGTCAGGAAACTA
ACAAAATCTTTTAAAAATGAATTGATATATAAAATACGTCATTTGCGTTA
ATCTTGTCAAATTCATGAAACAGGGGCCGATAAATGCACTCGCTTTTCAC
TCGACGTTCTATATCACTCTTCTCGATCATTTCTTAATTAAAAACAAAAA
CAAAAGACTGATTTAGTAGCAGAGAATGAGAAATATTTATGTCATTGGTT
TCCCGCCGATGTGAGGCGCCTGACACAACCTGTCGCTCGCTGTACTAAGT
CCCTTCGGATAAACAGTCCAGTAATAAAAAGAGAGCGTCATTTAAAACAA
CATTGGATGACTTTTTGCGTACACACAGTTCGTCTTTCTCTTCTCTCCGT
TACTTTAAGACGTTTCGAACTAACAACAACAACATCAAAAGTTCATATGC
GCCTATTATGAAGGAATAGACTAAGGACCAAAATTAACCTCCAAAGCTTA
GGACCCTTTTTTATCTTTATATAATATTTAAATAAGTTTACAGATAACAA
ACGACGAAAGGCATTCTGAATGTTAGCACAGTGTATAGTTGTTTACACAA
GCAAGTGATTAACCGCAAAAACCATCGAGTAAACAGTGGCTCGTGCAAAG
TCTTTTGTTCTCTTATGTAACGTTTTTTTTCAAAGGGCTTCATCAAAAAA
TGACCTGAGGCTTAGCAGATAGAGGAAGAGGCCCTCCNTTCAAAGGGCTT
CATCAAAAAATGACCTGAGGCTTAGCAGATAGAGGAAGAGGCCCTCCGGC
CCTCCTCAATCTAAGCTCTTTTAAGACCATAATGATTGCTTATCTATGGG
ACGGCAAATAGATATGAATGAATCACTTATGATTTATTACTCTTGATCGA
CAAATTGAGATGTATCAAATTACTTGGCACAAGAAAGCATTGTTACAAAA
TATCCTCAGTACCCCAATTTCAATGCTAAAGCGAAAGACAGGAAGGGTAA
AAACGAGATTTTATTATATCCATTTTTAACGTTTTTCTAAAGCCATTTTT
TCTTTTATCAAAACATTAAAAAATTGTTCACACATCTTTAAAGATTTAGC
GCATCATATTTATTACAATATNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNTGCTTTTTAAAGTACCTCCACACCACACT
ATCAATATCATAAATCAAAACGAGCACAAAGTGTAATATTTCTAACGGTC
TCTTGATTAATGGTCATTTAATTATCCTTAAGTCATTAGAACGTTGTCAA
AAATAATGACCTTTAAAAAGAAAAATATTGAAGATTTCTTGTTGGTAGTA
CTGCACCAATTTTGAAATTGAAGAACTTTCATTTTGTAATCGCGTAGGTT
TTTCTTCATAACATCAAATTTTAATCGGTCATCAACATCAGGGTCAATAA
ACAAATCATAAATTGCTGAATAGAAGATCGAAAGCACAATCAGAGGAGAT
AAGATAGGTTAGGTAGGAAAGAAAAGACATCTAGAAGGACGGAGAGAGAT
AACGAAGAAAGGAAAAATCTAATTGAAATATATAGAGCGCCGAATACAAG
AATAATTACCTAATTACCAATCAAAAACTATTGATGACAACAAACAAAAG
CATACAACAAGAGGGCGGCATTATTAAAGCATACAAAAATACAGGAAATT
GTATGTGTTTTCGAACTGACAAAGAAATAAGTAGGGGTTAAATTCTTTAC
TTAAATACACAACACCTTACTGTGGTTAATGAGCACTATTCAGTGACGGG
TAGTCAGTGATTTTGTAAAGACATACTCTTGACAGTGTATTTAATTCAAG
ATGGTTGTCCTTTCAGCACCACCCAAGAGACGTCGTGAACGAACTACCTT
CACTAAAGCACAACTCGATGTATTAGAAGATCTCTTTGGCAAAACAATGT
ACCCTGATGTTTTCATGAGAGAAGAAGTTGCCAAAAAAATCAGTCTGGCT
GAAGCTCGAGTACAGGTAAATTCCAATTGATTTGTTTGTAATGAATGTTT
ATGACTTGAATAATACTACAAACTACTTCAAAGTACAAACAGATTGAGTA
AATGTATTGCCATATGATTGGTCTAGCGCAACCGTTAACATAGGGTTTAT
TATTGATTTTCTGATTAATATAGAAGGATATAGAATTTGGAATCGTTACC
TTCATTATTTCTAAAATTTTCGATTTCGTTTGCTTACAGGTCTGGTTCAA
AAACAGACGTGCCAAATTTCGTCGGTCACGAGAAAGCCCAGGACGACACT
TCGATCACACCAAATTCTTACAACGTGATAAATTCTTACAAGACGATTTG
GTTCGTTCATTCAAATCAGGACCAAGCAGTTTCTTACCACCATATCAATA
TCAAAACCCGTTATGGAAATACCCACCACCTGCAACAGAGCACAGCCCAA
CATACGGTACGTCACAGGTAGTAGACGATTCTTTTTATAGACAATCAACG
AACGGTTATAACTCAGTTTCGCCTTACACCGACTACCCTTCGTCTTACTC
CACTTCACCACGTCAACAATATTTCTCCACACAATACTACAGTCCACCCG
GTGGTAACCATGACTACAACTCATGCGCACCAAGCACCACTACATCGAAC
ACTGTACCTAGTATGTCCTTTTCACCTCACGAAAACACAACGAAAACAGA
TCTCAATTTACCGAACACTTTTCAATGGAGCGGCAGTGGTGGCACTCCGC
AATACGGAATGACAGCCGGTGGATCAAACATATAAACATTCAGGAGTCGT
CTTTGACAACTCAAAACTAAAAACGAGAATACAAAACTAAAATATGGGGG
ACCATTCTCTTGACACAGACGCGCAAACGGCAATCAGAATCAACCATCAT
ATGGGTTGGAGACTTGGATAATCCTGGGAAAAGAATGCCGCACTCAAGCG
GGTTTTTGCTCTTCGATTATTCTTCGTATTACTGGTCGAGCAGTCAGTCG
GTATTTTACTGACAGAGGTATCTAGTTCCGATTTTAATTACTCGAAGGAT
GAAACTTTTAAAGTTTTTATAGAAAATGTAAAAAACTAACATCAGATAAT
TGTGTAATTGAGAATGGAACGCCCGTCTACCGGATGGAGTTGGAATGCAA
CAGGAACATTATGAAAAGAAGAAGATTTGTTTTCTTTCTTCGAAGAACAA
AGAAAGAGATTCAAACTTGATACATTTTCATAAATAAACAAAAACAACGT
CTTGAACTATTTTCCCTAGAAACAAACTAAAAATACTTGTTTTATTTTTA
CGTATTATTTGAACCATATTTTTAAATACTTTTATCCAATTTTTTTTTAT
TTTGGGAATTGATGACCAATTATTAAGTTGAACCCTGAAATCACCAAGTT
TTTAGTTTTCGATTTTTACAGGTTTTTAATGAGATCTTTTATTTTCTTTC
GTGTACATATATACTCATGACATTTATTTTTCTTCTAAGAGCATCGTTTT
ATTTTACATTTATTTTTTTAAGTTGTATTTTTTTCTCGTCCTTATTTTTC
TCATATATACTTTCATTCGATATTTCTTTTTAAGGAAACAATTTTAATGT
AGCTAGGGAAATAATTCTAGGTGGCTGCTGTCTTGACGACTGTCAGCTTT
TAATAGCAATTTATTTGTAATGTTGTACATAAAATGTGTATAATGCTAGT
GGGTTTATAACATGATGATAATAGTTACATATTGAAAAAAGAACTCATTC
TATTGTATACACAGACAATTTTAATTCAAAAGACCGAACAAATAAAAACA
A
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
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| TCONS_00063520-exon-scaffold_391-1575043694:87217..87732 | TCONS_00063520-exon-scaffold_391-1575043694:87217..87732 | Clytia hemisphaerica | exon |
| TCONS_00063520-exon-scaffold_391-1575043694:85981..86187 | TCONS_00063520-exon-scaffold_391-1575043694:85981..86187 | Clytia hemisphaerica | exon |
| TCONS_00063520-exon-scaffold_391-1575043694:83568..83716 | TCONS_00063520-exon-scaffold_391-1575043694:83568..83716 | Clytia hemisphaerica | exon |
| TCONS_00063520-exon-scaffold_391-1575043694:81782..83343 | TCONS_00063520-exon-scaffold_391-1575043694:81782..83343 | Clytia hemisphaerica | exon |
| TCONS_00063520-exon-scaffold_391-1510915933:87217..87732 | TCONS_00063520-exon-scaffold_391-1510915933:87217..87732 | Clytia hemisphaerica | exon |
| TCONS_00063520-exon-scaffold_391-1510915933:85981..86187 | TCONS_00063520-exon-scaffold_391-1510915933:85981..86187 | Clytia hemisphaerica | exon |
| TCONS_00063520-exon-scaffold_391-1510915933:83568..83716 | TCONS_00063520-exon-scaffold_391-1510915933:83568..83716 | Clytia hemisphaerica | exon |
| TCONS_00063520-exon-scaffold_391-1510915933:81782..83343 | TCONS_00063520-exon-scaffold_391-1510915933:81782..83343 | Clytia hemisphaerica | exon |
| TCONS_00063520-exon-scaffold_391-1491911889:87217..87732 | TCONS_00063520-exon-scaffold_391-1491911889:87217..87732 | Clytia hemisphaerica | exon |
| TCONS_00063520-exon-scaffold_391-1491911889:85981..86187 | TCONS_00063520-exon-scaffold_391-1491911889:85981..86187 | Clytia hemisphaerica | exon |
| TCONS_00063520-exon-scaffold_391-1491911889:83568..83716 | TCONS_00063520-exon-scaffold_391-1491911889:83568..83716 | Clytia hemisphaerica | exon |
| TCONS_00063520-exon-scaffold_391-1491911889:81782..83343 | TCONS_00063520-exon-scaffold_391-1491911889:81782..83343 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_391 | supercontig | scaffold_391:81782..87732 - |
Blast
BLAST of TCONS_00063520 vs. Swiss-Prot (Human)
Match: OTX2 (Homeobox protein OTX2 OS=Homo sapiens GN=OTX2 PE=1 SV=1) HSP 1 Score: 109.383 bits (272), Expect = 1.023e-25 Identity = 50/63 (79.37%), Postives = 55/63 (87.30%), Query Frame = 3
Query: 717 PGTPPKRRRERTTFTKAQLDVLEDLFGKTMYPDVFMREEVAKKISLAEARVQVWFKNRRAKFR 905
P TP K+RRERTTFT+AQLDVLE LF KT YPD+FMREEVA KI+L E+RVQVWFKNRRAK R
Sbjct: 32 PATPRKQRRERTTFTRAQLDVLEALFAKTRYPDIFMREEVALKINLPESRVQVWFKNRRAKCR 94
The following BLAST results are available for this feature:
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