TCONS_00063505 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00063505
Unique Name	TCONS_00063505
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1037

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_391:66155..71161+

transcript sequence

>TCONS_00063505 ID=TCONS_00063505|Name=TCONS_00063505|organism=Clytia hemisphaerica|type=transcript|length=1037bp
TTAGATAGATATTACtgaattatacatttttgaCTTACAACGATGGAAGA
CTCACCTAAAAGGGAAATTAAGCAAGGTCGAAGAGCTGGGAATTTGTTTC
AAACAGCAGGCTCAAATGCATCAACGAATGAAAGTAACAACAATGCAATT
AAAACAGAGGCATCTTCATCACTGTCACCGAAACCAGCACGAAAGCAGGG
AGGATGGGCGGATgatataaaagaaaagaaaagagggaaatttggaagaa
tgttGGAAGAAGAAGACGAGCGATTGAAACAAGATGCGACAGTAGTTTTG
GATAATGATGGTGATGACATTCCAATCATCCCTGAACTTGATGACGTCAC
TGAAGATGACATGGCTTCACAAGTCGCTGCACCTCCGAGTGTGCTGGTCA
CAAGGATTGCAACCTACAAAGAACTTGATCATGATTTCGAAAAACATACA
GGACTTTTGACATTGGACGGTGATATTGATCTCAAATTATTGGGAAATGT
TCTTGCACCAGAATCTGAAATACAAGAGGCTGACAAGGCATGGAATTGGG
ATCGTGTTTTTACTGAGGTATCATCCGAATTGCGTTCTGAATGGGAACAA
ACCAAATCACTAACATCCAGCAACAAAGATTAAATCTGATTATAACTTTG
CATACACCAAAGGCTTGGCTTCTGGTACCTCTTCGCAGGCCTTTGTCGAT
GCTCTAGGGAGTAGAAGATAGGCATTTAAATTATTATCATTTTTAGCGCA
CAATATGTACATATAGAATAATGTAAATAATGGAAACAAATTTTaccatc
aaaatattcaaagcAACTTTACTATCACAacaaattatattccattattg
CTGGTTCTTTGAAATTGCAATTGCTACCCCATGAGCCAATTTTGAAGAAT
TCGCGTGGATTTAGTTTCGGGAGTCTGTGAACTAGTAAGATTTTAGATCT
GTTATCATGTTGTTCTGGGTGAGAAACAGAAGTGCTTACATTATTTTTCA
TTACTTTCGAGTAGGTTTTATAAGCTTATGAAAAGAC

Run BLAST on NCBI

transcript from alignment at scaffold_391:66155..71161+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00063505 ID=TCONS_00063505|Name=TCONS_00063505|organism=Clytia hemisphaerica|type=transcript|length=5007bp|location=Sequence derived from alignment at scaffold_391:66155..71161+ (Clytia hemisphaerica)
TTAGATAGATATTACtgaattatacatttttgaCTTACAACGATGGAAGA
CTCACCTAAAAGGGTATGTATTCTTTGATACACTATTAACCCTAATAATG
GCAAGGGGCGTTGTACACCTTTTTAAGCCTCTTAGGAAAACTTGCCAGTT
GTTGCACACTAGGTCAGGTTTTGTTACTTCACTGTAAGTGCATGTCAATA
AATGCAAATAAATGGTGTAAAACTGCAAAATCTTAAAGTATctataattt
ttaaaacctgGTCTAAATAATTTCGTTTCGACAGGATTTATAAATAATAT
AACTTAATGattaatgattaaaaaaatcttcaaatatgaTTATTCGACGA
AGTTTTACTTTTGATCTGTAAATActaatttttgcttttattttttaatg
gtttttctTCTTAATTACTTCATTAGGAAATTAAGCAAGGTCGAAGAGCT
GGGAATTTGTTTCAAACAGCAGGCTCAAATGCATCAACGAATGAAAGTAA
CAACAATGCAATTAAAACAGAGGTAAGTGAAGTTTTCTCAAAAACTCTAC
GATCCCACAGGAGCCACAAATAATCAATTTAAGGTTCAGAAGTAGGAACA
AATTTGGACTAAATTTGATTGACCAAATCTGATAGATAACAGGAACTTTT
TGTTTGAAACAGAAAACGTTGCTTCGAAAATTGATAAATGAGGGTTGATT
GATCACATTCGCTGATTTAGCTTTTTATAAGCACTGGACGGTTATTTCCT
TTGAACTCTGTATTATGTTTTATTTATCACATTGCTCATTGAACTTGGAT
GTCAATTTTTTATCATCGTTTGTTTGGTTTATTTGTAAATCCTCATCTAT
TAGTTAAAATCAGCCCAAACACAAATTTAACACTCtcttcgaaaataatt
tttcttgaaattattAGGCATCTTCATCACTGTCACCGAAACCAGCACGA
AAGCAGGGAGGATGGGCGGATgatataaaagaaaagaaaagagggtaatt
aaaagtgaatttttttattcgtTTGAGCACAGCCTTTTTGACCCTATCGA
ATTTAAAGGTTTGATCGAAATTACCACAAGAATTTAATTATTTTCCTATT
AAGCTGGATGCCTAATTTCAAATACCTACATAAACAAAAATCTAGTCATA
TGCTTGGATATATAATAAATATTGTTCTTTTTAGCATGGCAGCAAGAAAA
TAAGCGAAGCGATAAATAACGTGATcgcttttatttttatgtttttttat
ttctatatcgcaaatcaaaaataaaagatatttattttattcCAGACATG
CCCTTCCAGCACCCCCTccccaaaattttgaaatcttcatccaattgact
tgaaatttttcaagtgtgcaccaaatatgaattgtcatctttggtgaaaa
ttttagCATCACCGATGACATCATTGCCACTTgatgacgtcttcattttt
tgataagcaaaaaAGGACCccctctaactttttttcactttaatattttt
tgctcaaatatTGAGCAACTCCACGAGGCATTTATTTTTGGGGCAcatgg
taattttttttccacCTGCCGGTatggtgtattttacagaccggtccaaA
ATTACCCTTTTTGCCTAAATCAGCCCTAGGATACATGTCTAGTCTACATG
CCATGTCTAGTGATTGGAAGATGCTGTTTAATCCTGTTTGGAACATGGAT
TGATAATAAACTAGTTGTTAACATAAAAGTATCATAAAAGAggattaaaa
atgtttattttttagtgATGAAGGCAGTGATAACGAGCAAGATGATGAAG
GGTAATCAAAATTAAACATAAACCACTAAATTTTAAATATATTCGATAAA
ATTGTTTAAGTAAACTTAACTCCAGACACCAGGATAAAAATTAAAACCAT
AGTCAGAGttgctttgttttgttttcatctCTTAACAAATATCTCTACTA
CCAGTGAAACCTCTAGCAAGGATAAAAAGTTTGTTGCTCTCTTCTTCACC
ACTcgtgattatcttttcaacggttgATTAAGGTATTTGTTAAGAAAAGA
CAGGCAAACCTTAAATTATTGCACACCTATCGTGAATTGAATAGACAAAT
ATACTATAATAATTAATATCTAATGATGGTTTAGAATAAATTGAATAACT
TAGGAGAATTTATAAGCATTTTAAATTAAAGATTTTAATCCCTTAAAAAC
GTTATTCTCGCTAAAGaccttggtaatggtttggGAAACTAAGACATATT
TTATTTActatgaattttattttgtaggaaatttggaagaatgttGGAAG
AAGAAGAGTAAGTTTTTAGTTTAATCAATAGATCCATGTAGAAAACGCTC
CTGTAAATCCATACTTTCACCTCCGAGCTCCCCTCTGTCACGATTTGGGA
CCATTCTACTTATCATCACTAAAGTTCATTCGCTTGCTTGCCCTTCCTCA
AACAATGCTTCGATCGTAAAACAAGAATTAGTGCACACTAAATATAAGAT
ATATCAAAGTGAATATACGATTCTGACTAAAACCTTCAGAACTGAAAGAT
ATACCATGAAGGTAAGCTACTAAActgatgaaaaatattttacactaAAA
CATTTACATTAAAAAAGTCGGTAGAAGAATGTAGGATgttttttctgagt
ttttttACTGAGTTTTTCTTTATCCACACATCCAGCGAGCGATTGAAACA
AGATGCGACAGTAGTTTTGGATAATGATGGTGATGACATTCCAATCATCC
CTGAACTTGATGACGTCACTGAAGATGACATGGCTTCACAAGTCGCTGCA
CCTCCGAGGTTTGCGTAATGCGTGCACTTCGTTCAAGGTCGTATtgaata
cagtagagtctctcgAACCTCAACTCaaatgtctctttaactcaaacaag
tttcGCCATCCCCTCTTTTAACAAAGCCTTATAAACCAATCTCCATTACT
TGAAGTTCACTCACTTCACTCGAACAAAAATTTGTGTTCCCTTGTTATTG
AGACGCCACTGTATCAAAGAACGTTCAGAATCGACAATCTCCATTTCGTA
ACCAACACCGATATTAAAATCACCTATCTTTGTCTGATTAAATGTTTCGT
ATAGGAAAGCTTTCTCTTCCTATACTATAAATTAAATTCCAGTGAAATTT
AGTTTTCCAATGAATTACTTCCAAACTAATTGTTTTATATAGTGTGCTGG
TCACAAGGATTGCAACCTACAAAGAACTTGATCATGATTTCGAAAAACAT
ACAGGACTTTTGACATTGGTATGTAGTTGCTTATTGTAAATCAAGTAAAA
GTTCGTTATTATCTTTGGAGATCAAGAAATATATCAAGGGATGAAGTCAT
ATTATATTCTTTACTTTGGAGCCTTGATAATTAGATGTTGCTCTTAATGC
TGCATGTTATACTTTTCCATATGCATTTATGAATATTGATTGAAATTTTA
GGACGGTGATATTGATCTCAAATTATTGGGAAATGTTCTTGCACCAGAAT
CTGAAATACAAGAGGTAACTTACAATTCttcgattattttttttttcaat
agaacAGAAGAGGGAAAGAGGTGAGAGGTCTTTCATTTAATTTCTTCCCG
TCTTTAGGCTGACAAGGCATGGAATTGGGATCGTGTTTTTACTGAGGTAT
CATCCGAATTGCGTTCTGAATGGGAACAAACCAAATCACTAACATCCAGC
AACAAAGATTAAATCTGATTATAACTTTGCATACACAAAAGGCTTGGCTT
CTGGTACCTCTTCGCAGGCCTTTGTCGATGCTCTAAGGAGTAGAAGATAG
GCATTTAAATTATTATCATTTTTAGCGCACAATATGTACATATAATAATG
TAAATAATGGAAACAAATTTTaccatcaaaatattcaaagcAACTTTACT
ATCACAacaaattatattccattattgCTGGTTCTTTGAAATTGCAATTG
CTACCCCATGAGCCAATTTTGAAGAATTCGCGTGGATTTAGTTTCGGGAG
TCTGTGAACTAGTAAGATTTTAGATCTGTTATCATGTTGTTCTGGGTGAG
AAACAGAAGTGCTTACATTATTTTTCATTACTTTCGAGTAGGTTTTATAA
GCTTATGAAAAGACAGAAAAACTGGTTACGATGTGTTAAgattaaaaaac
ataaaaagaaattgaaaaaaggaaATGTAGATTAATTACTAATTCAGGGG
ACCACCAATTTTTGAACCTACCTCgcaggtcctttaaattaaccgatgtt
ctTACGTCCGTTCGTCTggtaccagcttttctcgggattggttcattagt
tttttctgatgttttgcacagtgatgcaaaatgcctgacgtccgcgctcg
ataggatcgatcatcggaacggctcgatgacggatcgatatgtgatcgat
ggattacttaacgatccggatatgAGATCGATAGacgatcgatactcaag
atttttttaagcttatgattagttatcgattatttatcgatctatcgtcg
atcttttatcgatcttttcgaccctatcgactcgNAGGTATCATCCGAAT
TGCGTTCTGAATGGGAACAAACCAAATCACTAACATCCAGCAACAAAGAT
TAAATCTGATTATAACTTTGCATACACCAAAGGCTTGGCTTCTGGTACCT
CTTCGCAGGCCTTTGTCGATGCTCTAGGGAGTAGAAGATAGGCATTTAAA
TTATTATCATTTTTAGCGCACAATATGTACATATAGAATAATGTAAATAA
TGGAAACAAATTTTaccatcaaaatattcaaagcAACTTTACTATCACAa
caaattatattccattattgCTGGTTCTTTGAAATTGCAATTGCTACCCC
ATGAGCCAATTTTGAAGAATTCGCGTGGATTTAGTTTCGGGAGTCTGTGA
ACTAGTAAGATTTTAGATCTGTTATCATGTTGTTCTGGGTGAGAAACAGA
AGTGCTTACATTATTTTTCATTACTTTCGAGTAGGTTTTATAAGCTTATG
AAAAGAC

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_039811	XLOC_039811	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_391	supercontig	scaffold_391:66155..71161 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.19607e-06	5.83635e-05	1.97966e-05	1.93815	3.82849	0.0103365	0.00166559	3.54508	1.28522	0.475832	1.02947	0.75291	0.188556	0.0148679	0.848985	0.785028	0.492615	0.893281	0.219996	0.639179	1.19014	0.693118	0.00109849	1.55918	3.05698	1.82453	0.53554	0	1.07226	1.1559

Blast

[Close]

BLAST of TCONS_00063505 vs. Swiss-Prot (Human)
Match: IFT43 (Intraflagellar transport protein 43 homolog OS=Homo sapiens GN=IFT43 PE=1 SV=3)

HSP 1 Score: 110.923 bits (276), Expect = 2.090e-28
Identity = 78/177 (44.07%), Postives = 110/177 (62.15%), Query Frame = 1

Query:   70 KQGRRAGNLFQTXXXXXXXXXXXXXXIKTEASSSLSPKPARKQGGWADDIKEKKRGKFGRMLEEEDERLKQDATVVLDND-GDDIPIIPELDDVTEDDMASQVAAPPSVLVTRIATYKELDHDFEKHTXXXXXXXXXXXXXXXNVLAPESEIQEADKAWNWDRVFTEVSSELRSEWE 597
            K GRRA    Q +    +     N+++     +S +  P  +QGGWA D    K  KF R   EE E  +     +  +D G DIPIIP+L++V E+D   QVAAPPS+ + R+ TY++LD+D  K++ + TLDG+IDLKLL  VLAPE E++E D  W+WD +FTEVSSE+ +EW+
Sbjct:   21 KMGRRAQ---QESAQAENHLNGKNSSLTLTGETSSAKLPRCRQGGWAGD--SVKASKFRRKASEEIEDFRLRPQSLNGSDYGGDIPIIPDLEEVQEEDFVLQVAAPPSIQIKRVMTYRDLDNDLMKYSAIQTLDGEIDLKLLTKVLAPEHEVREDDVGWDWDHLFTEVSSEVLTEWD 192

The following BLAST results are available for this feature:

BLAST of TCONS_00063505 vs. Swiss-Prot (Human)

BLAST of TCONS_00063505 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
IFT43	2.090e-28	44.07	Intraflagellar transport protein 43 homolog OS=Hom...	[more]

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TCONS_00063505 (transcript) - C. hemisphaerica