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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00063478 ID=TCONS_00063478|Name=TCONS_00063478|organism=Clytia hemisphaerica|type=transcript|length=1094bp
TTCTTTGGTGTCGGGAAGTCCATGATGGCTTTGATGATTTTCTCGTTTGG
ACGGACAGAGGTAGGCGTGATTTCAAAGCCGGCAAACTCGACTGTGTCGG
CACCAAATGTAAATTTATCAGGGTTCAATATGATACCATTACGAGCGCAA
AGGTCAAGCCACTGTGCAGTTTGATGAAAGCTCCCTTCCAAGGTATCTGC
CCATAGTAGAGAATCATCAACAACTTTGATTTTGTTTGGGAAGTCACTGG
CTATTTCATCAAATCTTCTTGTGTAGCCGTCACCAGACGAAATGTAACCC
TGTGGTGCAGTGCAATATCGGTAACGACCCCAAGGGGTGATAAAGGTAGT
AAGATGCTTGTCTTCTTCACAGAGGGGAACACTGTGGTATCCATTCCAGG
CATCTGTGACGGTTTTCTTGACATTGTGGGGAACTGAACGTACTTGATGG
AATGGAGACTGAGTATGATGGGTTTCTCTAGTTGCGCAGGCATTGAGGGC
TTGGAAGTCTACGGTACGACGAGGCTCTCCATTTTTCTTGGCGCATACTA
CCATGCGATGACACCAGGTCACAGGTTCCCCAATTGGCACCTTTTCGAGG
ACCCCAAGTTGTACATCTCGGTCCAGATCGGCCTTGACTTTCTCTTGCCA
GTGAAATGAAACAGGAATTGGAGTGTGGTGAGCTGTAGGTTCTGCGGACT
CATCAATCTGGAGAGATAAGGGAGGTCCAGTCATCATCAGCAATGGTTGG
TGCTCGCATGTGTTGAAAGTGCTGGACTTGTAGTGATCTAGTAGGAAGTC
CTGTAGCTTCTGTCGATTCTCGTCTGTCCCTGCACATGGGAGATCATTAG
GCAGTGCCGGTGGAGGTTCACGTTTCGGACAGTTGCAGCCAATTGTTGTT
GGTGTTGGGAATTGTTCGGGATGATTGAGGTGATCGGTCGCTGATTTGAG
GACGTCAGCTGATGCAACTTATGATACTTGTCAGCCATGGCTGGGAAGTT
GGAGGAGATGATACCCAAGTCAATGCAAGCACCTTTGCTGATGAAGAATT
GGCTGGTTTCGTTGGTGACATATACCAGCTGTCGTGTTTCTTGG Run BLAST on NCBI protein sequence of TCONS_00063478-protein >TCONS_00063478-protein ID=TCONS_00063478-protein|Name=TCONS_00063478-protein|organism=Clytia hemisphaerica|type=polypeptide|length=245bp
MMTGPPLSLQIDESAEPTAHHTPIPVSFHWQEKVKADLDRDVQLGVLEKV
PIGEPVTWCHRMVVCAKKNGEPRRTVDFQALNACATRETHHTQSPFHQVR
SVPHNVKKTVTDAWNGYHSVPLCEEDKHLTTFITPWGRYRYCTAPQGYIS
SGDGYTRRFDEIASDFPNKIKVVDDSLLWADTLEGSFHQTAQWLDLCARN
GIILNPDKFTFGADTVEFAGFEITPTSVRPNEKIIKAIMDFPTPK Run BLAST on NCBI transcript from alignment at scaffold_39:19956..21049 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00063478 ID=TCONS_00063478|Name=TCONS_00063478|organism=Clytia hemisphaerica|type=transcript|length=1094bp|location=Sequence derived from alignment at scaffold_39:19956..21049 (Clytia hemisphaerica)
CCAAGAAACACGACAGCTGGTATATGTCACCAACGAAACCAGCCAATTCT
TCATCAGCAAAGGTGCTTGCATTGACTTGGGTATCATCTCCTCCAACTTC
CCAGCCATGGCTGACAAGTATCATAAGTTGCATCAGCTGACGTCCTCAAA
TCAGCGACCGATCACCTCAATCATCCCGAACAATTCCCAACACCAACAAC
AATTGGCTGCAACTGTCCGAAACGTGAACCTCCACCGGCACTGCCTAATG
ATCTCCCATGTGCAGGGACAGACGAGAATCGACAGAAGCTACAGGACTTC
CTACTAGATCACTACAAGTCCAGCACTTTCAACACATGCGAGCACCAACC
ATTGCTGATGATGACTGGACCTCCCTTATCTCTCCAGATTGATGAGTCCG
CAGAACCTACAGCTCACCACACTCCAATTCCTGTTTCATTTCACTGGCAA
GAGAAAGTCAAGGCCGATCTGGACCGAGATGTACAACTTGGGGTCCTCGA
AAAGGTGCCAATTGGGGAACCTGTGACCTGGTGTCATCGCATGGTAGTAT
GCGCCAAGAAAAATGGAGAGCCTCGTCGTACCGTAGACTTCCAAGCCCTC
AATGCCTGCGCAACTAGAGAAACCCATCATACTCAGTCTCCATTCCATCA
AGTACGTTCAGTTCCCCACAATGTCAAGAAAACCGTCACAGATGCCTGGA
ATGGATACCACAGTGTTCCCCTCTGTGAAGAAGACAAGCATCTTACTACC
TTTATCACCCCTTGGGGTCGTTACCGATATTGCACTGCACCACAGGGTTA
CATTTCGTCTGGTGACGGCTACACAAGAAGATTTGATGAAATAGCCAGTG
ACTTCCCAAACAAAATCAAAGTTGTTGATGATTCTCTACTATGGGCAGAT
ACCTTGGAAGGGAGCTTTCATCAAACTGCACAGTGGCTTGACCTTTGCGC
TCGTAATGGTATCATATTGAACCCTGATAAATTTACATTTGGTGCCGACA
CAGTCGAGTTTGCCGGCTTTGAAATCACGCCTACCTCTGTCCGTCCAAAC
GAGAAAATCATCAAAGCCATCATGGACTTCCCGACACCAAAGAA Coding sequence (CDS) from alignment at scaffold_39:19956..21049 >TCONS_00063478 ID=TCONS_00063478|Name=TCONS_00063478|organism=Clytia hemisphaerica|type=CDS|length=735bp|location=Sequence derived from alignment at scaffold_39:19956..21049 (Clytia hemisphaerica)
ATGATGACTGGACCTCCCTTATCTCTCCAGATTGATGAGTCCGCAGAACC
TACAGCTCACCACACTCCAATTCCTGTTTCATTTCACTGGCAAGAGAAAG
TCAAGGCCGATCTGGACCGAGATGTACAACTTGGGGTCCTCGAAAAGGTG
CCAATTGGGGAACCTGTGACCTGGTGTCATCGCATGGTAGTATGCGCCAA
GAAAAATGGAGAGCCTCGTCGTACCGTAGACTTCCAAGCCCTCAATGCCT
GCGCAACTAGAGAAACCCATCATACTCAGTCTCCATTCCATCAAGTACGT
TCAGTTCCCCACAATGTCAAGAAAACCGTCACAGATGCCTGGAATGGATA
CCACAGTGTTCCCCTCTGTGAAGAAGACAAGCATCTTACTACCTTTATCA
CCCCTTGGGGTCGTTACCGATATTGCACTGCACCACAGGGTTACATTTCG
TCTGGTGACGGCTACACAAGAAGATTTGATGAAATAGCCAGTGACTTCCC
AAACAAAATCAAAGTTGTTGATGATTCTCTACTATGGGCAGATACCTTGG
AAGGGAGCTTTCATCAAACTGCACAGTGGCTTGACCTTTGCGCTCGTAAT
GGTATCATATTGAACCCTGATAAATTTACATTTGGTGCCGACACAGTCGA
GTTTGCCGGCTTTGAAATCACGCCTACCTCTGTCCGTCCAAACGAGAAAA
TCATCAAAGCCATCATGGACTTCCCGACACCAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00063478-exon-scaffold_39-1491911889:19956..21049 | TCONS_00063478-exon-scaffold_39-1491911889:19956..21049 | Clytia hemisphaerica | exon |
| TCONS_00063478-exon-scaffold_39-1510915933:19956..21049 | TCONS_00063478-exon-scaffold_39-1510915933:19956..21049 | Clytia hemisphaerica | exon |
| TCONS_00063478-exon-scaffold_39-1575043694:19956..21049 | TCONS_00063478-exon-scaffold_39-1575043694:19956..21049 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_39 | supercontig | scaffold_39:19956..21049 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000477 | RT_dom |
Blast
The following BLAST results are available for this feature:
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