TCONS_00063472 (transcript) - C. hemisphaerica

Overview
NameTCONS_00063472
Unique NameTCONS_00063472
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length167

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00063472 ID=TCONS_00063472|Name=TCONS_00063472|organism=Clytia hemisphaerica|type=transcript|length=167bp
CCAGCATCTCCTTGATGAGTTTGATATTGATCTACTTGGAATCCTGCTAA
AGGGGTGTAAGGTTCAAGCGTTGTGAAATTCTCCGGCTTGATGTATTTTT
CATCATCCGCTTCTCCTGAcagatttttgtcaaatgaCTCAGACATATAA
TCATACGTCGATTCTTC
Run BLAST on NCBI

transcript from alignment at scaffold_39:348327..348844-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00063472 ID=TCONS_00063472|Name=TCONS_00063472|organism=Clytia hemisphaerica|type=transcript|length=518bp|location=Sequence derived from alignment at scaffold_39:348327..348844- (Clytia hemisphaerica)
CCAGCATCTCCTTGATGAGTTTGATATTGATCTACTTGGAATCCTGCTAA
AGGGGTGTAAGGTTCGAGCGTTGTGAAATTCTCCGGTTTGATATATTTTT
CATCATTGGTGTAATCTCCAGCATCTCCTTGATGAGTTTGATATTGATCT
ACTTGGAATACTGCTAAAGGGGTGTAAGGTTCGAGCGTTGTGAAATTCTC
CGGTTTGATGTATTTTTCATCATTGTTGTAATCTCCAGCATCTCCTTGAT
GAGTTTGATATTGATCTGCTTGGAATACTGCTAAAGGGGTGTAAGGTTCA
AGCGTTGTAAAATTCTCCGGTTTGATGTATTTTTCATCATTGGTGTAATC
TCCAGCATCTCCTTGATGAGTTTGATATTGATTTACATGGAATCCTGCTA
AAGGGGTGTAAGGTTCAAGCGTTGTGAAATTCTCCGGCTTGATGTATTTT
TCATCATCCGCTTCTCCTGACAGATTTTTGTCAAATGACTCAGACATATA
ATCATACGTCGATTCTTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039781XLOC_039781Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063472-exon-scaffold_39-1575043694:348784..348844TCONS_00063472-exon-scaffold_39-1575043694:348784..348844Clytia hemisphaericaexon
TCONS_00063472-exon-scaffold_39-1575043694:348327..348432TCONS_00063472-exon-scaffold_39-1575043694:348327..348432Clytia hemisphaericaexon
TCONS_00063472-exon-scaffold_39-1510915933:348784..348844TCONS_00063472-exon-scaffold_39-1510915933:348784..348844Clytia hemisphaericaexon
TCONS_00063472-exon-scaffold_39-1510915933:348327..348432TCONS_00063472-exon-scaffold_39-1510915933:348327..348432Clytia hemisphaericaexon
TCONS_00063472-exon-scaffold_39-1491911889:348784..348844TCONS_00063472-exon-scaffold_39-1491911889:348784..348844Clytia hemisphaericaexon
TCONS_00063472-exon-scaffold_39-1491911889:348327..348432TCONS_00063472-exon-scaffold_39-1491911889:348327..348432Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_39supercontigscaffold_39:348327..348844 -
Expression
No biomaterial libraries express this feature.
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00063472 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
ZOOM
x 1
POSITION
0
CCAGCATCTCCTTGATGAGTTTGATATTGATCTACTTGGAATCCTGCTAAAGGGGTGTAAGGTTCAAGCGTTGTGAAATTCTCCGGCTTGATGTATTTTTCATCATCCGCTTCTCCTGAcagatttttgtcaaatgaCTCAGACATATAATCATACGTCGATTCTTC20406080100120140160Sequence
Match NameE-valueIdentityDescription
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