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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00063462 ID=TCONS_00063462|Name=TCONS_00063462|organism=Clytia hemisphaerica|type=transcript|length=1391bp
GTACGAGAGTTacttattgttttcaaaacacGAGGCTGATGAGAAGGATG
gaCACGCGTACAAAACACTCGTCAAACTAAagccaaaatacaaaaactat
CTCATGAAGACAACAGTAAAACAACAACGGAAGACGATAAGAAGGACAAG
AAAATCACTTTGGGGAGATCAGCTGAATACTACTTGAAGGCTATCGACTA
TAACGCTGATAACTCACAATCGAATCCAGCAAAAATAAATCCACCGGTAA
ATCAAGACAACTTACTAAACTGGAATGATAATATGATTTACGCTAGCTCT
AACCAAAATCTTCCAAAGGATGTGACAGCAAATAAAGGATCTTCTGGAGA
TTTCGGCTACCAGCATACATCTAATCACGAGAGAACCAGAACCTTTGATG
ATTCAACATACGAATACGCTTCTGTTCACTTGATGAAAAATACACCAGTG
ACTTCAGTTCGAAAATACGTTAAACCCGAGAATGCTACACCGATACTGCA
CAAGAAAAACGAACCTTACACCCCTTTAGCAGTATTCCAAGTAGGTCAAT
ATCAAACACATCAAGGAGATGCTGGAGATTACATCAATGATGCACAATAT
CTGGATTTGCCTGAACTGAATGATTATAAACTGAATTATAAGAAACCGAA
TATTAAAAACCCATCTTATACGAACCTAAGAAAGATAAAGAAATGATAGA
GAGGTGGTACAGTGATTGCTGAACAGATGGATTGGCCTCTTCCAGAAATT
GAATATTGGGGGTGGATATAACATTTATTTGGAAAATTACCTCCAAGATA
TTGTGACTTTTGatcccccggacaagcatcagttgaccccccgaaCATTC
ATAATCACCCCTAATCAGAGCAATTTTGCCCTCCAAACAAGGCGAATTTT
GTAGACTTTTCACTACCCTCGGACAATATTTCTTAAATATACTCCaccca
ccccccccccatgtacgaacattttctggaagagtccaTTCTGTTAAAGT
CATTCTCAAaagaatgcgggtgaaggaaaaaagctctcatgcgggcggcc
gaaattttttttttgctatttttgataaccattgaaatataactttttaa
agataacttttatgtacaaacagtatgatgtaagccctgaatactaatgt
atcaactactaacgaagtCTGCAGCCGagtcagaaaattattttttttca
cccggccggtttccagAAACACTATATTTatttaatacaatttttttttt
aaatattcctAAGATTGtagaattttaagttttaaccAATTTTAGTGGTA
TAGATTTGCTAACAAATCGAATCAAGTACAAAAGAGAAgagttttgaaga
aaaaaaaaagttttactaggaaaccttttttttataagaac Run BLAST on NCBI transcript from alignment at scaffold_39:367808..373982+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00063462 ID=TCONS_00063462|Name=TCONS_00063462|organism=Clytia hemisphaerica|type=transcript|length=6175bp|location=Sequence derived from alignment at scaffold_39:367808..373982+ (Clytia hemisphaerica)
GTACGAGAGTTacttattgttttcaaaacacGAGGCTGATGAGAAGGATG
GTAGTATTACTATTACAACTTTTTGCATAGATTACCATTTCTCGAAGCGG
AATCGGATTGCAAAGACTTGTTATCAGTTGTCTGGTGTGTTTTAATTTAA
TTCGTTTTCAAGTAGTGATTGCAGTCATAATCATGGGGTCCACTGTTAAT
CAACAACAATGCGTTACATTGAACAtcattaaaggcaaaaatacTTTTTG
TTATACGGAAATATGGGAACCTTTCTCGTACGGTGGCACGTTGGGTCTTA
CCATTCCATTATGTGCCATTGCTTTCTTGGTAGTCGCCTTTGGATTTTTT
TGCACTGGAATCTTAAATGAACTTTCAAATTTGCGAGATGAATATCTCAC
ACATTTTGACAAAGAGGGAGCGAGTTGTTTTGAGAAATTATGTGCAAAAC
TTAGTAAAAAATCCAAATCTTTCTTCCTGATTTTCGGTGAACTCCAAGGT
TGGAAGTATATCTACGCTGTTATTGATATTTTGTTGGATTTAATAGTTTT
TTACAAACTGCAACAAGGATATTACTTTAATAAAGCAATATATCGAAATG
ACACAgtaatttggtttttatttgcTTTCGCATTATTGGGGTTCGTTTCA
AAAATGGAAGGATTTAGTTgtattttaaaaaagaaattgccacCGCAAAA
CAAGGGATTAACTGACTGGAGAGTATTTTTTGTGCTCTCGCAATTCCTCT
TTGACGACGGTCCCGAATTAATTTTGCAGTTTTTCTATATTGAAAATTAC
GAAGTTCGCTACACGGCCCAATGGATTCTGGCTAAAGATATTGCCTACAT
GATAGTGGCTGTTTTGAAATCCGTCTACCATTTCACGAAGGCCGTCAAAG
CGGTGAAAAAATGTTGTCAAAGCCCAAGAGGGTTTCTCGATTTTCTCTTG
TATATTTCGGTTTGGCTTTTCACGATAGTGTCGGTTTTAAGAGTCGTGGC
GCATTTTGTTCAACATCAAACCAACGAATTGACGCAATGGTGCTACCAAG
AAAAAGAAGGCCGAATCTATCAAACGCCATTTGACTTTGAATGTATGAGT
CTGTTCGATTGGGCTCTGTTGGTATTTTCCACTTTACCAGCGTTTTGCTT
TGTGGTTgggttttttctttttatcatcaTTCGTTGCGCTGAGGGCTCCG
TGGTTGAACCACAAGTCGAGCCACTGATCAATGAGGCACCGTAAAACCAT
CATTTTAACGAAAGTACAATTTCCCTATAAAAAAGGTATCTTATCGCAAA
TTAGGTTTtcttaaagaacatttttttcttaatttttataaATGTATNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNggggggggggcaattttccaggGCTGGTAAGTTTTTGGTCACAATTT
TCCTGTCACCATTTACTATTAGGCAGCCGAGGAGGCGATCTTTTTTTTGG
GTGGGGGAGGGGCGTGTGTTCAAAATCTCGATGTGTTTTCAAATTAGGAG
ACAAGAGGTATAACCAAGAAATCTGATGTGTTTTTGTCCCATAAGTAACC
CCAAAAATATTCAGAACACCAAAAGGAGACAGAGTATAGTCGAGAAAAAC
CCAGCCCTGGAAAGCGATTAATTTTATGGCAAGTTTCatcatttctttta
ttttgtataaTTATAGCTATACTAATAATAGTTTTATTCTAgaaattctt
ccaaaaggtttgaaaaagaaaaagtaaacgTTTGTAGTATACACATAAcg
aagcgagataccctgcaaaatttatgaggagGTGCAGACTATTATAACat
attcattaatttttgataaaagaaagacaataattacagtgacgtaaaaa
ccgctctcatcaataaattttgcagggtatctcgctacgccgtTGGTACC
CCCTGGTTTAAAGGTTAAAAGAAACCTTAACACGTATAATCGGACAGAAA
AATAAACACTCAATTCTTGCAAACAAAGTACTTGAAAAAAGTCTCTGGCA
GTCTCGGGTGTTTCTAAGCAACGCAAAAATAACCTCCAAAGCTATAAGAG
CATCGTTTGTGGGCCTTTCATAACAGTATCACTAGCATTATACTATGTTC
GTACGTTTTCGGACTTCTTTTTACATAAAAGCCTATTATGTGAGCTTGAC
CTTTGTTATCTTTTAAagtagactctcgcttatttgaacttctattattc
gaatacCTCTATAGTTCGAACTAATCCcgagtccccgtcaaggagggata
atttctataattcgaatccttCAGTAATTCGAACAATTAAGAAGAAACAC
TCTTAATTTTAatctaaataagtttgcgtttatcgacccagtgatattca
tattggaagtttatcgtggcttggatcacgagatttacgtatggctacgt
ttcgagagattcttttCCCATCATCGGGCAAAGAGGAGGATGTTTTCCCC
ACTATTACCCCACTCttaattttaaccatttttatctagcatgctagact
tactaattcagacatagcaGAACATAAGCATAAATAATAGCATTGACTAT
AATGTACAAattgatattatcccgtaacagtTATCATGTAACACACGTAT
TACTGTATTATACGGATAATAAACAAATCCAGTTGAACGTGTATTAGGCG
ATATGAAACAGctcaacatttttttctcaaaggaAATTTCGAGATCATTG
CACTGACCTTGTATTTAAAGGCTCTGACTATAGTGACTTTTCCACACCTT
TTATAtacaaaatgtaaattttggcaATAGGGCATTacacaaactatata
agaaaattttaagaataagttaagaacattttaaagatttatggactcaa
aaacacgcgatttcttaggaaaatgggtcacaaatggcgaaaataagaac
ttgttatgaacattttaaggcttaacactcaaaaagttaagaacatccca
aggcttcaaaaattttggatgttcttataaaaagaaacgtgtagTCTAAA
TCGCACACCTcaatagatatacttcctataagaaactgtTTACGCTAGAG
GATGAACAGAAGCTTATATGGAGCTCAACTTATAAtctaaagatttcaaa
atgttACCACTTGTAAATATTATTCCATGAAACACTTCTTTTGACATAAT
ATGTAGAGAACAAAAACTCATCTTGAAATTAAATATACCGTGTTCTTCAT
TTCCCAGATAAAAAAGACTATCTTTCTCATTTAAAACTTGTCGTgcgttg
gtttgttttggttatagAGAGATTCTGTGTCTCgctacaagtttttttta
ttagagcccaatttataagaacattgaggctgaaattcgtagaaaaatta
agaacaatgtaagaacatgcccagcctcagtatTGTCGataacgcattta
agaacattttaggctgaaaatttatcaaaaaataagcacatccaggggct
cagccaaattttaggtgttctaataaaaaaaacgtgtagtgtcaTTCTTC
TGGTACAAAGTCATTGAAAAATAGGTGCGTGGGAGTGCTTTCTTTGCAAA
AGAAAAGAGGCCAATATATTGGATTGGAAAAAGTAATGCCAATTGAATTT
AAGCAGTTAGCACATTAAAGATAGAACTTCACACTAGATAAAACAAGAGA
CTTGTAGGGAAATGTCTCGAACACTATCCGTTTCAAACCGTTTTTCGCGG
TTCTTTTCCTGCAAAGAAGAGTTTGGTAAAGGCTAGGTAAATGCCACTAG
CGTTGTTAACCACTCAGCCATTCGCAATTATTACCAGCATTCAGCCAGAC
TGCATTGCGTAACTGTGTACCCTACCTCGCCAAAAGCTAACCCTCAACTT
TTCGTAAATGGTATGAACCAGTTTTTAGTCCCTTGAGCGACCGTAGTACA
ATGGTATAGCGttcggctacggtgcgcaaggttcaATCTTCGGTCATGCT
ATATACCAAAAGGCTTCGTAACTTTTACACAAATGGTGCGTGATGCTTGA
TCAAATGTCACACCAACCCTTCTTTCGGATAGaaagctatcgaaagagga
acTTTCGGGTCGCATCCGACTGAAAAGTCGTAGACTTGTTTAGTCTCAGA
TATGGAATAATTTTAAGTTTAACTTCAAGCAAGTCATTACTTATGAGGgt
ttaacaaagaaaaattccttttttgtttatttaggaCACGCGTACAAAAC
ACTCGTCAAACTAAagccaaaatacaaaaactatCTCATGAAGACAACAG
TAAAACAACAACGGAAGACGATAAGAAGGACAAGAAAATCACTTTGGGGA
GATCAGCTGAATACTACTTGAAGGCTATCGACTATAACGCTGATAACTCA
CAATCGAATCCAGCAAAAATAAATCCACCGGTAAATCAAGACAACTTACT
AAACTGGAATGATAATATGATTTACGCTAGCTCTAACCAAAATCTTCCAA
AGGATGTGACAGCAAATAAAGGATCTTCTGGAGATTTCGGCTACCAGCAT
ACATCTAATCACGAGAGAACCAGAACCTTTGATGATTCAACATACGAATA
CGCTTCTGTTCACTTGATGAAAAATACACCAGTGACTTCAGTTCGAAAAT
ACGTTAAACCCGAGAATGCTACACCGATACTGCACAAGAAAAACGAACCT
TACACCCCTTTAGCAGTATTCCAAGTAGGTCAATATCAAACACATCAAGG
AGATGCTGGAGATTACATCAATGATGCACAATATCTGGATTTGCCTGAAC
TGAATGATTATAAACTGAATTATAAGAAACCGAATATTAAAAACCCATCT
TATACGAACCTAAGAAAGATAAAGAAATGATAGAGAGGTGGTACAGTGAT
TGCTGAACAGATGGATTGGCCTCTTCCAGAAATTGAATATTGGGGGTGGA
TATAACATTTATTTGGAAAATTACCTCCAAGATATTGTGACTTTTGatcc
cccggacaagcatcagttgaccccccgaaCATTCATAATCACCCCTAATC
AGAGCAATTTTGCCCTCCAAACAAGGCGAATTTTGTAGACTTTTCACTAC
CCTCGGACAATATTTCTTAAATATACTCCacccaccccccccccatgtac
gaacattttctggaagagtccaTTCTGTTAAAGTCATTCTCAAaagaatg
cgggtgaaggaaaaaagctctcatgcgggcggccgaaattttttttttgc
tatttttgataaccattgaaatataactttttaaagataacttttatgta
caaacagtatgatgtaagccctgaatactaatgtatcaactactaacgaa
gtCTGCAGCCGagtcagaaaattattttttttcacccggccggtttccag
AAACACTATATTTatttaatacaattttttttttaaatattcctAAGATT
GtagaattttaagttttaaccAATTTTAGTGGTATAGATTTGCTAACAAA
TCGAATCAAGTACAAAAGAGAAgagttttgaagaaaaaaaaaagttttac
taggaaaccttttttttataagaac
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00063462-exon-scaffold_39-1491911889:367808..367857 | TCONS_00063462-exon-scaffold_39-1491911889:367808..367857 | Clytia hemisphaerica | exon |
| TCONS_00063462-exon-scaffold_39-1510915933:367808..367857 | TCONS_00063462-exon-scaffold_39-1510915933:367808..367857 | Clytia hemisphaerica | exon |
| TCONS_00063462-exon-scaffold_39-1575043694:367808..367857 | TCONS_00063462-exon-scaffold_39-1575043694:367808..367857 | Clytia hemisphaerica | exon |
| TCONS_00063462-exon-scaffold_39-1491911889:372642..373982 | TCONS_00063462-exon-scaffold_39-1491911889:372642..373982 | Clytia hemisphaerica | exon |
| TCONS_00063462-exon-scaffold_39-1510915933:372642..373982 | TCONS_00063462-exon-scaffold_39-1510915933:372642..373982 | Clytia hemisphaerica | exon |
| TCONS_00063462-exon-scaffold_39-1575043694:372642..373982 | TCONS_00063462-exon-scaffold_39-1575043694:372642..373982 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_39 | supercontig | scaffold_39:367808..373982 + |
Blast
The following BLAST results are available for this feature:
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