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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00063439 ID=TCONS_00063439|Name=TCONS_00063439|organism=Clytia hemisphaerica|type=transcript|length=1205bp
AACGAGTGTATTTTGACAAACTTCCAAGCAGATCACTTCCGCTGGACACT
GCAAACCTGTGGTTTCGTAGCATGTACCAAACTATTCTTCGCTGAAAAGA
TAACGCGAAGTACAGTTTGTTACGGTTAGGCACTATTCCGTGTCTGAGAC
ATTTTTTCACAAGTCTCTAAATGTCTGAGACAAACTAAGACACAAAAGTT
CTCTAACCGAAACAGACCGACACCACtgcaagattttaaaaaaaataaaa
NACGCCCGTGGGCGTTCGGGGTGGTACAGGCTAGTGGTTTCGCTTTGCAT
TGACTGAAAGAATTTCTCCGTGCGAGCCAATCAACGCAagctttttcctt
aaaaaatgaaTGGTTTTTTCAAACATATCTGATGAGCCTCGGAAGATTCC
CTCCCTTAACCAGTGGGATCGTACCACGAGCGTCAGAGGCCAAATTTCTG
CAAGAATATTCGACCTCACTCACGACGAGGTCGGTGATTTTAATCTGCGA
GGTCACTGcattgcaaaacgttcgaatctggAAAAGTTTTACTTACTAtg
taaaaaaaatctcaaaaatctaaacaagagctcaaaattttcagattctt
gGTTGGAATGAGagtttaaataaaatattttaaatgttttgggCTTAATT
TTCTAAGGACTTTGAAGGTCCAATAATAATCCTACGTCAGTGTACAGCAG
GGGACTCAGTACAAAAATAAATGAGAAAACTTGTGTTTATTAGCAAGAAA
GAAAacaactaaattttttttttttttaacaactgTATTTTTAGTAGCTT
GAAAAGTATGGAACATGAATTGCTCAATAACGAATATTGCTGAAAACCGA
CTTCTTcaatctcaaaaaattaagattgtCAATACAATGTCTACTTAAAA
TAAAAGAGGACTCTAACAGCCAAAATTGAAGCAGAAATTGGAAAACCGAA
AAAGTAAAATAAGAGTATAAGTTTTCActtgaaataaaactttaaacATT
TTCGAACTGATGGAACTATGATAATACTAAAACAAATTACTGTATTGAAA
GGTCCTCCTACTACAAAAGAATGTTTTGTATACTTATATAAATCAAACAA
ATGTCAACCGTACCCAATCTTTCCTAATTTCCCCATGGCACTTTGATTTA
CTTATTATTTCGATTATTTCGAATTCAGTGTCgttcattaaaaaattaat
tggcT Run BLAST on NCBI transcript from alignment at scaffold_39:56291..57626+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00063439 ID=TCONS_00063439|Name=TCONS_00063439|organism=Clytia hemisphaerica|type=transcript|length=1336bp|location=Sequence derived from alignment at scaffold_39:56291..57626+ (Clytia hemisphaerica)
AACGAGTGTATTTTGACAAACTTCCAAGCAGATCACTTCCGCTGGACACT
GCAAACCTGTGGTTTCGTAGCATGTACCAAACTATTCTTCGCTGAAAAGA
TAACGCGAAGTACAGTTTGTTACGGTTAGGCACTATTCCGTGTCTGAGAC
ATTTTTTCACAAGTCTCTAAATGTCTGAGACAAACTAAGACACAAAAGTT
CTCTAACCGAAACAGACCGACACCACtgcaagattttaaaaaaaataaaa
atcgccCATGGGTGTTCGGGGTGGTACAGGCTAGTGGTTTCGCTTTGCAt
tgactgaaaaaaatgaatGGGTTTTTCAAACATATCTGACGAGCCTCGGA
AGATTTCCTCCCTTAACCAGTGGGATCGTACNACGCCCGTGGGCGTTCGG
GGTGGTACAGGCTAGTGGTTTCGCTTTGCATTGACTGAAAGAATTTCTCC
GTGCGAGCCAATCAACGCAagctttttccttaaaaaatgaaTGGTTTTTT
CAAACATATCTGATGAGCCTCGGAAGATTCCCTCCCTTAACCAGTGGGAT
CGTACCACGAGCGTCAGAGGCCAAATTTCTGCAAGAATATTCGACCTCAC
TCACGACGAGGTCGGTGATTTTAATCTGCGAGGTCACTGcattgcaaaac
gttcgaatctggAAAAGTTTTACTTACTAtgtaaaaaaaatctcaaaaat
ctaaacaagagctcaaaattttcagattcttgGTTGGAATGAGagtttaa
ataaaatattttaaatgttttgggCTTAATTTTCTAAGGACTTTGAAGGT
CCAATAATAATCCTACGTCAGTGTACAGCAGGGGACTCAGTACAAAAATA
AATGAGAAAACTTGTGTTTATTAGCAAGAAAGAAAacaactaaatttttt
ttttttttaacaactgTATTTTTAGTAGCTTGAAAAGTATGGAACATGAA
TTGCTCAATAACGAATATTGCTGAAAACCGACTTCTTcaatctcaaaaaa
ttaagattgtCAATACAATGTCTACTTAAAATAAAAGAGGACTCTAACAG
CCAAAATTGAAGCAGAAATTGGAAAACCGAAAAAGTAAAATAAGAGTATA
AGTTTTCActtgaaataaaactttaaacATTTTCGAACTGATGGAACTAT
GATAATACTAAAACAAATTACTGTATTGAAAGGTCCTCCTACTACAAAAG
AATGTTTTGTATACTTATATAAATCAAACAAATGTCAACCGTACCCAATC
TTTCCTAATTTCCCCATGGCACTTTGATTTACTTATTATTTCGATTATTT
CGAATTCAGTGTCgttcattaaaaaattaattggcT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00063439-exon-scaffold_39-1491911889:56291..56540 | TCONS_00063439-exon-scaffold_39-1491911889:56291..56540 | Clytia hemisphaerica | exon |
| TCONS_00063439-exon-scaffold_39-1510915933:56291..56540 | TCONS_00063439-exon-scaffold_39-1510915933:56291..56540 | Clytia hemisphaerica | exon |
| TCONS_00063439-exon-scaffold_39-1575043694:56291..56540 | TCONS_00063439-exon-scaffold_39-1575043694:56291..56540 | Clytia hemisphaerica | exon |
| TCONS_00063439-exon-scaffold_39-1491911889:56672..57626 | TCONS_00063439-exon-scaffold_39-1491911889:56672..57626 | Clytia hemisphaerica | exon |
| TCONS_00063439-exon-scaffold_39-1510915933:56672..57626 | TCONS_00063439-exon-scaffold_39-1510915933:56672..57626 | Clytia hemisphaerica | exon |
| TCONS_00063439-exon-scaffold_39-1575043694:56672..57626 | TCONS_00063439-exon-scaffold_39-1575043694:56672..57626 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_39 | supercontig | scaffold_39:56291..57626 + |
Blast
The following BLAST results are available for this feature:
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