TCONS_00063400 (transcript) - C. hemisphaerica

Overview
NameTCONS_00063400
Unique NameTCONS_00063400
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3961

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00063400 ID=TCONS_00063400|Name=TCONS_00063400|organism=Clytia hemisphaerica|type=transcript|length=3961bp
CAGGACGATACAGCAACAGAAACAAGAAACAACAGTGCAACAGATGCAAC
TCAGAACACCAACCTGAGCGCTGCCCAGCCAATGGGAAGTCCTGTTTTGT
ATGCCAAGGAAAAAACCATTTTGCAAAGACACCTGCTTGCCCCAAGACAA
TCAAGAGGGTCAGCACAGAGAGGAAAAGAAGCCAGGTACAAGAGAAGAAA
ACACATACAGCAACAACCAAGGAGTCAGCCACCATCAACAAGGTCTCCAC
CACAACACCAAACAACAAGTGGGTGGACGTGGAGATTGGAGGGATCAAAC
AAAAGTTGTACGCTGACACCGGCAGTGAATTCACCATCATAACTCCGCAA
CACTACTCCCCCTTGATGGGTGAGCTAGAAGAGTCAGACCTCAACTTCAG
ACCATGGGGTGGAAACAACCTCCTAGATGTGCAGGGGATGGTCAACACAA
CAATACACAACAGCAAAGGAGCCCATGTGTACAGCAAAGTCTATGTCATC
GATGGTTTCCAACCAGAACCCCTCCTTGGTGACACAGATGCAGAGAAGCT
TGGCATCATCACTTTCAACAAAGATGGCAGAGAACCAACAGGGACACCTA
TCAGACGAATCCCAGACAAGATAAGACGAAACCTTGAAGTAGATGTTGAA
ACACACCCACCAAACACCACAGCCGTTCCACAAGAGCGAGTTAAAGCGCA
GACACTCGTCGAAAAGTTCAGAGATCTAGTCTTCGACGACAACAAGGTTG
GGTGTCTAAAGATCGAACCCATACACCTCGAGTACGCCAAAGACTTCAAG
CCAAAACAACAACCTTTCAGAAACATCCCATTCCACTACCAAGAAGACGT
GAGCAAGCTACTCCAGTTCCTTCGGGAACAGGGTGTCATAACAGATGTCG
ATCCACGCAACAGCTACGACTGCGTAATGAACGTGGTCATCACAGACAAG
AAAAATGGGCAGACACGTATGAACATCGACAACACACCCAGAAACCCGGG
AATGCAACGGACCAAATTCCATGTTCAAACACCCCAAGAGATACGTCACG
AATTGAAGGAAGCCACCGTGTTCAGTGAGATGGACATGGGTTGGGGATTC
CACCAACTTCCACTAGACGAAGCCACAAAGAAAAAGAGCATCTTCCAGAC
CCATGAAGGCCTCCATCGAATGGAACGTCTCTACTTCGGGCCGACAGCAT
CAAGTGGCATATTCCACAACGAAGTCAGAAAATGCTTCGCTGGACTCAAA
GGCGTCGTCACCCTCCATGACAACATACTGGTATATGGCAAGGACTACGA
CGACCACTACACCAACCTGAAACAAGTGCTGAATAGATGTGCCGAAGCTG
GAATCATACTCAAACTCTCAAAATCCAACTTCTGCCTAACCCGAGTCAAG
TGGTTTGGAAGAGACTTTCACTCCAACGGTGTCACAGCGGACCAAGACAA
GATCAGAAACATCCAAGAAGGAGGAAGGCCGAACAACACAGAAGATGTGA
GATCTCTGCTCATGGCATGTCAGTACAATGCAAAATTCACGTATGACAAT
TCGCTAAAACTCAGCTATGAAGAGGTTACCGCACCACTTCGACGACTTCT
CAAGAAGGACCAGAAATTCATATGGGGAACAGAACAAGAACAAGCATATC
AAAAACTAATGACCATACTGAACAACCCAGCAACACTACAGTCGTACAAC
CCGCAAAGAAAGACGCACATAGTGGCAGACACATCAGAAGTTGGCACCCA
ATGCAGCATCTACCAAGAGAAGACACGGGAAACAGGAACCAAAACCTGGG
TACCAATCGACCATGTTAGCCGTGCACTAACACAACAAGAACAGGACTAC
AGCCCAATTGAGAGGGAAAGCCTTGGTTTACAATGGGGGTTGGAACAATT
TCGGTACTACGTGGTTGGGAGCTCCTTCACCGGATGGACAGATCACGAAC
CACTGCTTCCAATCTACAACAACCAACAGAAGCTGACATCGAAACGCATC
TCAAAACACAGGGACAGAGTACAAGACCTGTGCTACCAACTACGATACCT
CAAAGGAAAAGAAATGCCCTGCGATTATGGCAGCCGTCATCCAAATAGCA
TTGATCACCTGACCAAACAAGAGCAGGCATCCCAAGGATTCGACGTGGGG
AACACAATTTACGTAAGAAAGATCATCAATCTACACAATTCTCCGAATGC
CATTGACATTGCAACAATAAAAGAGGAAGCACAAGACGATCCAGAATACC
AGAGACTAATCAGGGCACTAAAAGAAGGTGAGAAGATTCCGCCACGAGAA
ACACCCATCAACAAAACTATCTACTCAGAGCTTTGCATTGTTGACGGCCT
TGTCTACCGTGGAGACAAGATTGTGCTGCCAAACAAACAGGAAACAAACG
ATCACCCAAACGTTCGAACGAAGATACTAGACATTGCACACGAGGGACAC
CCGGGAGCAACAATGATGAAGAGGTTTATTCGAACAAGAATATGGTTCCC
ATCCATGGACAAACGAATCGAAGAAGTTGTGAGAGGTTGTCTTGCATGCC
AGGCCGCAACCAACACCAAGCACAGGGACCCAAACACAGCATCTAAACCA
CCGGAAGAACTATGGCAGAAGCTCTCTGCAGACCACTGGGGACCAACTCC
TGACGGATTCCACCTGCTAGTGGTCATTGACGAGCTGTCCCGATACCCTG
AAGTTGCCGTCGTCAAGGGAACAGGCGCAGAACAGAACATTGAAGCATTC
GATGCGATTTTTGCAAGACACGGATACTGCAAACGACTCAAGACTGACAA
TGGACCACCATTCAATGGCAACGAAAACCACCTCCTGCAAGAGTACTTCA
GATGGGCAGGAATTGACCACAAACCAACCTACAGTGCAGAGGACCTGGAA
GCCAACGGACTGGCAGAAGCGTTCATGAAAATTTGTCGCAAGGTTTGGCA
CACAGCACTCATAGAGAAGGACAACCCGAGGGCGGAGATAAACAAGATGC
TCCAACTTTATCGTGCAACACCACACCCAACGACCGGCCAAGCACCTGCA
GAGCTGCTCTTTGGACGCAAATTTCAAAGTCGACTACCAAGAGGTCCAAA
GACAGACCAAAGAGGGAACGTAGAAGAAGCAAAGCAACACGACCAAGAGG
TAAAGAGAAAACAAACGGAAGCGAAGGACAGCAAGAGTTATGTCAAGCCA
CAcaacattaaaatcaatgaCCACGTCCTCTTAAAGCAACGCAGCACAAA
GACCAAGCCTCCGTATGATCCGGAACCCTACACAGTAACATCCATCACAG
GACACCAGATCACAGCAACGAGAGGACATAAGACGTTCACCAGAGATGCC
CAGAAATGGAAACAATTTACACAACGAGAGAAACCAGACTACAAGAACCT
GCGACAGGCCGACAAAGATGCCAATACGTGGGAGTTAGACGAGGAAACAA
CAGAACAACAAGCCCCACAAGCTCAACAACAAATCGAACAGCCAAACGTT
GAAGAAAACCAACAAGTCGATATTCAAGCTTCGCAACCTCCAGATCGGAC
GGCCAAACAGGGCACGTCGACCACCAGTTCGATACAACGACTACGAAATG
AGCACTtgaagattgaagacaaaacaCATAAAAAGCAAATCTATAGTATA
GACACGGAGATACATATACTCCTCGAAACATTCACATTGATCATACGATG
CAGCTTAACTGCACGTATTTCTAGTTTTTCTCCTAGCTTTTATATTTTGC
CTAGGTTTCGTTTTATAGAATTTATACGGTGTAGCTTAACTGCACGTATA
CATTTCCAGCTGTTCACTCACTCCAGCGCAAGCGGTGTGCATGTGTAACA
TCCTACTTTGTTATCTTTCATTTTAGACTAGATCTCAAATATATATTAGA
AACTTAATAAACATTACAATGACGGTTagacaatcattcagaacacgaat
agtgacgatct
Run BLAST on NCBI

protein sequence of TCONS_00063400-protein

>TCONS_00063400-protein ID=TCONS_00063400-protein|Name=TCONS_00063400-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1281bp
GRYSNRNKKQQCNRCNSEHQPERCPANGKSCFVCQGKNHFAKTPACPKTI
KRVSTERKRSQVQEKKTHTATTKESATINKVSTTTPNNKWVDVEIGGIKQ
KLYADTGSEFTIITPQHYSPLMGELEESDLNFRPWGGNNLLDVQGMVNTT
IHNSKGAHVYSKVYVIDGFQPEPLLGDTDAEKLGIITFNKDGREPTGTPI
RRIPDKIRRNLEVDVETHPPNTTAVPQERVKAQTLVEKFRDLVFDDNKVG
CLKIEPIHLEYAKDFKPKQQPFRNIPFHYQEDVSKLLQFLREQGVITDVD
PRNSYDCVMNVVITDKKNGQTRMNIDNTPRNPGMQRTKFHVQTPQEIRHE
LKEATVFSEMDMGWGFHQLPLDEATKKKSIFQTHEGLHRMERLYFGPTAS
SGIFHNEVRKCFAGLKGVVTLHDNILVYGKDYDDHYTNLKQVLNRCAEAG
IILKLSKSNFCLTRVKWFGRDFHSNGVTADQDKIRNIQEGGRPNNTEDVR
SLLMACQYNAKFTYDNSLKLSYEEVTAPLRRLLKKDQKFIWGTEQEQAYQ
KLMTILNNPATLQSYNPQRKTHIVADTSEVGTQCSIYQEKTRETGTKTWV
PIDHVSRALTQQEQDYSPIERESLGLQWGLEQFRYYVVGSSFTGWTDHEP
LLPIYNNQQKLTSKRISKHRDRVQDLCYQLRYLKGKEMPCDYGSRHPNSI
DHLTKQEQASQGFDVGNTIYVRKIINLHNSPNAIDIATIKEEAQDDPEYQ
RLIRALKEGEKIPPRETPINKTIYSELCIVDGLVYRGDKIVLPNKQETND
HPNVRTKILDIAHEGHPGATMMKRFIRTRIWFPSMDKRIEEVVRGCLACQ
AATNTKHRDPNTASKPPEELWQKLSADHWGPTPDGFHLLVVIDELSRYPE
VAVVKGTGAEQNIEAFDAIFARHGYCKRLKTDNGPPFNGNENHLLQEYFR
WAGIDHKPTYSAEDLEANGLAEAFMKICRKVWHTALIEKDNPRAEINKML
QLYRATPHPTTGQAPAELLFGRKFQSRLPRGPKTDQRGNVEEAKQHDQEV
KRKQTEAKDSKSYVKPHNIKINDHVLLKQRSTKTKPPYDPEPYTVTSITG
HQITATRGHKTFTRDAQKWKQFTQREKPDYKNLRQADKDANTWELDEETT
EQQAPQAQQQIEQPNVEENQQVDIQASQPPDRTAKQGTSTTSSIQRLRNE
HLKIEDKTHKKQIYSIDTEIHILLETFTLIIRCSLTARISSFSPSFYILP
RFRFIEFIRCSLTARIHFQLFTHSSASGVHV
Run BLAST on NCBI

transcript from alignment at scaffold_388:49227..53187

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00063400 ID=TCONS_00063400|Name=TCONS_00063400|organism=Clytia hemisphaerica|type=transcript|length=3961bp|location=Sequence derived from alignment at scaffold_388:49227..53187 (Clytia hemisphaerica)
agatcgtcactattcgtgttctgaatgattgtctAACCGTCATTGTAATG TTTATTAAGTTTCTAATATATATTTGAGATCTAGTCTAAAATGAAAGATA ACAAAGTAGGATGTTACACATGCACACCGCTTGCGCTGGAGTGAGTGAAC AGCTGGAAATGTATACGTGCAGTTAAGCTACACCGTATAAATTCTATAAA ACGAAACCTAGGCAAAATATAAAAGCTAGGAGAAAAACTAGAAATACGTG CAGTTAAGCTGCATCGTATGATCAATGTGAATGTTTCGAGGAGTATATGT ATCTCCGTGTCTATACTATAGATTTGCTTTTTATGtgttttgtcttcaat cttcaAGTGCTCATTTCGTAGTCGTTGTATCGAACTGGTGGTCGACGTGC CCTGTTTGGCCGTCCGATCTGGAGGTTGCGAAGCTTGAATATCGACTTGT TGGTTTTCTTCAACGTTTGGCTGTTCGATTTGTTGTTGAGCTTGTGGGGC TTGTTGTTCTGTTGTTTCCTCGTCTAACTCCCACGTATTGGCATCTTTGT CGGCCTGTCGCAGGTTCTTGTAGTCTGGTTTCTCTCGTTGTGTAAATTGT TTCCATTTCTGGGCATCTCTGGTGAACGTCTTATGTCCTCTCGTTGCTGT GATCTGGTGTCCTGTGATGGATGTTACTGTGTAGGGTTCCGGATCATACG GAGGCTTGGTCTTTGTGCTGCGTTGCTTTAAGAGGACGTGGtcattgatt ttaatgttgTGTGGCTTGACATAACTCTTGCTGTCCTTCGCTTCCGTTTG TTTTCTCTTTACCTCTTGGTCGTGTTGCTTTGCTTCTTCTACGTTCCCTC TTTGGTCTGTCTTTGGACCTCTTGGTAGTCGACTTTGAAATTTGCGTCCA AAGAGCAGCTCTGCAGGTGCTTGGCCGGTCGTTGGGTGTGGTGTTGCACG ATAAAGTTGGAGCATCTTGTTTATCTCCGCCCTCGGGTTGTCCTTCTCTA TGAGTGCTGTGTGCCAAACCTTGCGACAAATTTTCATGAACGCTTCTGCC AGTCCGTTGGCTTCCAGGTCCTCTGCACTGTAGGTTGGTTTGTGGTCAAT TCCTGCCCATCTGAAGTACTCTTGCAGGAGGTGGTTTTCGTTGCCATTGA ATGGTGGTCCATTGTCAGTCTTGAGTCGTTTGCAGTATCCGTGTCTTGCA AAAATCGCATCGAATGCTTCAATGTTCTGTTCTGCGCCTGTTCCCTTGAC GACGGCAACTTCAGGGTATCGGGACAGCTCGTCAATGACCACTAGCAGGT GGAATCCGTCAGGAGTTGGTCCCCAGTGGTCTGCAGAGAGCTTCTGCCAT AGTTCTTCCGGTGGTTTAGATGCTGTGTTTGGGTCCCTGTGCTTGGTGTT GGTTGCGGCCTGGCATGCAAGACAACCTCTCACAACTTCTTCGATTCGTT TGTCCATGGATGGGAACCATATTCTTGTTCGAATAAACCTCTTCATCATT GTTGCTCCCGGGTGTCCCTCGTGTGCAATGTCTAGTATCTTCGTTCGAAC GTTTGGGTGATCGTTTGTTTCCTGTTTGTTTGGCAGCACAATCTTGTCTC CACGGTAGACAAGGCCGTCAACAATGCAAAGCTCTGAGTAGATAGTTTTG TTGATGGGTGTTTCTCGTGGCGGAATCTTCTCACCTTCTTTTAGTGCCCT GATTAGTCTCTGGTATTCTGGATCGTCTTGTGCTTCCTCTTTTATTGTTG CAATGTCAATGGCATTCGGAGAATTGTGTAGATTGATGATCTTTCTTACG TAAATTGTGTTCCCCACGTCGAATCCTTGGGATGCCTGCTCTTGTTTGGT CAGGTGATCAATGCTATTTGGATGACGGCTGCCATAATCGCAGGGCATTT CTTTTCCTTTGAGGTATCGTAGTTGGTAGCACAGGTCTTGTACTCTGTCC CTGTGTTTTGAGATGCGTTTCGATGTCAGCTTCTGTTGGTTGTTGTAGAT TGGAAGCAGTGGTTCGTGATCTGTCCATCCGGTGAAGGAGCTCCCAACCA CGTAGTACCGAAATTGTTCCAACCCCCATTGTAAACCAAGGCTTTCCCTC TCAATTGGGCTGTAGTCCTGTTCTTGTTGTGTTAGTGCACGGCTAACATG GTCGATTGGTACCCAGGTTTTGGTTCCTGTTTCCCGTGTCTTCTCTTGGT AGATGCTGCATTGGGTGCCAACTTCTGATGTGTCTGCCACTATGTGCGTC TTTCTTTGCGGGTTGTACGACTGTAGTGTTGCTGGGTTGTTCAGTATGGT CATTAGTTTTTGATATGCTTGTTCTTGTTCTGTTCCCCATATGAATTTCT GGTCCTTCTTGAGAAGTCGTCGAAGTGGTGCGGTAACCTCTTCATAGCTG AGTTTTAGCGAATTGTCATACGTGAATTTTGCATTGTACTGACATGCCAT GAGCAGAGATCTCACATCTTCTGTGTTGTTCGGCCTTCCTCCTTCTTGGA TGTTTCTGATCTTGTCTTGGTCCGCTGTGACACCGTTGGAGTGAAAGTCT CTTCCAAACCACTTGACTCGGGTTAGGCAGAAGTTGGATTTTGAGAGTTT GAGTATGATTCCAGCTTCGGCACATCTATTCAGCACTTGTTTCAGGTTGG TGTAGTGGTCGTCGTAGTCCTTGCCATATACCAGTATGTTGTCATGGAGG GTGACGACGCCTTTGAGTCCAGCGAAGCATTTTCTGACTTCGTTGTGGAA TATGCCACTTGATGCTGTCGGCCCGAAGTAGAGACGTTCCATTCGATGGA GGCCTTCATGGGTCTGGAAGATGCTCTTTTTCTTTGTGGCTTCGTCTAGT GGAAGTTGGTGGAATCCCCAACCCATGTCCATCTCACTGAACACGGTGGC TTCCTTCAATTCGTGACGTATCTCTTGGGGTGTTTGAACATGGAATTTGG TCCGTTGCATTCCCGGGTTTCTGGGTGTGTTGTCGATGTTCATACGTGTC TGCCCATTTTTCTTGTCTGTGATGACCACGTTCATTACGCAGTCGTAGCT GTTGCGTGGATCGACATCTGTTATGACACCCTGTTCCCGAAGGAACTGGA GTAGCTTGCTCACGTCTTCTTGGTAGTGGAATGGGATGTTTCTGAAAGGT TGTTGTTTTGGCTTGAAGTCTTTGGCGTACTCGAGGTGTATGGGTTCGAT CTTTAGACACCCAACCTTGTTGTCGTCGAAGACTAGATCTCTGAACTTTT CGACGAGTGTCTGCGCTTTAACTCGCTCTTGTGGAACGGCTGTGGTGTTT GGTGGGTGTGTTTCAACATCTACTTCAAGGTTTCGTCTTATCTTGTCTGG GATTCGTCTGATAGGTGTCCCTGTTGGTTCTCTGCCATCTTTGTTGAAAG TGATGATGCCAAGCTTCTCTGCATCTGTGTCACCAAGGAGGGGTTCTGGT TGGAAACCATCGATGACATAGACTTTGCTGTACACATGGGCTCCTTTGCT GTTGTGTATTGTTGTGTTGACCATCCCCTGCACATCTAGGAGGTTGTTTC CACCCCATGGTCTGAAGTTGAGGTCTGACTCTTCTAGCTCACCCATCAAG GGGGAGTAGTGTTGCGGAGTTATGATGGTGAATTCACTGCCGGTGTCAGC GTACAACTTTTGTTTGATCCCTCCAATCTCCACGTCCACCCACTTGTTGT TTGGTGTTGTGGTGGAGACCTTGTTGATGGTGGCTGACTCCTTGGTTGTT GCTGTATGTGTTTTCTTCTCTTGTACCTGGCTTCTTTTCCTCTCTGTGCT GACCCTCTTGATTGTCTTGGGGCAAGCAGGTGTCTTTGCAAAATGGTTTT TTCCTTGGCATACAAAACAGGACTTCCCATTGGCTGGGCAGCGCTCAGGT TGGTGTTCTGAGTTGCATCTGTTGCACTGTTGTTTCTTGTTTCTGTTGCT GTATCGTCCTG

Coding sequence (CDS) from alignment at scaffold_388:49227..53187

>TCONS_00063400 ID=TCONS_00063400|Name=TCONS_00063400|organism=Clytia hemisphaerica|type=CDS|length=3846bp|location=Sequence derived from alignment at scaffold_388:49227..53187 (Clytia hemisphaerica)
TTACACATGCACACCGCTTGCGCTGGAGTGAGTGAACAGCTGGAAATGTA
TACGTGCAGTTAAGCTACACCGTATAAATTCTATAAAACGAAACCTAGGC
AAAATATAAAAGCTAGGAGAAAAACTAGAAATACGTGCAGTTAAGCTGCA
TCGTATGATCAATGTGAATGTTTCGAGGAGTATATGTATCTCCGTGTCTA
TACTATAGATTTGCTTTTTATGtgttttgtcttcaatcttcaAGTGCTCA
TTTCGTAGTCGTTGTATCGAACTGGTGGTCGACGTGCCCTGTTTGGCCGT
CCGATCTGGAGGTTGCGAAGCTTGAATATCGACTTGTTGGTTTTCTTCAA
CGTTTGGCTGTTCGATTTGTTGTTGAGCTTGTGGGGCTTGTTGTTCTGTT
GTTTCCTCGTCTAACTCCCACGTATTGGCATCTTTGTCGGCCTGTCGCAG
GTTCTTGTAGTCTGGTTTCTCTCGTTGTGTAAATTGTTTCCATTTCTGGG
CATCTCTGGTGAACGTCTTATGTCCTCTCGTTGCTGTGATCTGGTGTCCT
GTGATGGATGTTACTGTGTAGGGTTCCGGATCATACGGAGGCTTGGTCTT
TGTGCTGCGTTGCTTTAAGAGGACGTGGtcattgattttaatgttgTGTG
GCTTGACATAACTCTTGCTGTCCTTCGCTTCCGTTTGTTTTCTCTTTACC
TCTTGGTCGTGTTGCTTTGCTTCTTCTACGTTCCCTCTTTGGTCTGTCTT
TGGACCTCTTGGTAGTCGACTTTGAAATTTGCGTCCAAAGAGCAGCTCTG
CAGGTGCTTGGCCGGTCGTTGGGTGTGGTGTTGCACGATAAAGTTGGAGC
ATCTTGTTTATCTCCGCCCTCGGGTTGTCCTTCTCTATGAGTGCTGTGTG
CCAAACCTTGCGACAAATTTTCATGAACGCTTCTGCCAGTCCGTTGGCTT
CCAGGTCCTCTGCACTGTAGGTTGGTTTGTGGTCAATTCCTGCCCATCTG
AAGTACTCTTGCAGGAGGTGGTTTTCGTTGCCATTGAATGGTGGTCCATT
GTCAGTCTTGAGTCGTTTGCAGTATCCGTGTCTTGCAAAAATCGCATCGA
ATGCTTCAATGTTCTGTTCTGCGCCTGTTCCCTTGACGACGGCAACTTCA
GGGTATCGGGACAGCTCGTCAATGACCACTAGCAGGTGGAATCCGTCAGG
AGTTGGTCCCCAGTGGTCTGCAGAGAGCTTCTGCCATAGTTCTTCCGGTG
GTTTAGATGCTGTGTTTGGGTCCCTGTGCTTGGTGTTGGTTGCGGCCTGG
CATGCAAGACAACCTCTCACAACTTCTTCGATTCGTTTGTCCATGGATGG
GAACCATATTCTTGTTCGAATAAACCTCTTCATCATTGTTGCTCCCGGGT
GTCCCTCGTGTGCAATGTCTAGTATCTTCGTTCGAACGTTTGGGTGATCG
TTTGTTTCCTGTTTGTTTGGCAGCACAATCTTGTCTCCACGGTAGACAAG
GCCGTCAACAATGCAAAGCTCTGAGTAGATAGTTTTGTTGATGGGTGTTT
CTCGTGGCGGAATCTTCTCACCTTCTTTTAGTGCCCTGATTAGTCTCTGG
TATTCTGGATCGTCTTGTGCTTCCTCTTTTATTGTTGCAATGTCAATGGC
ATTCGGAGAATTGTGTAGATTGATGATCTTTCTTACGTAAATTGTGTTCC
CCACGTCGAATCCTTGGGATGCCTGCTCTTGTTTGGTCAGGTGATCAATG
CTATTTGGATGACGGCTGCCATAATCGCAGGGCATTTCTTTTCCTTTGAG
GTATCGTAGTTGGTAGCACAGGTCTTGTACTCTGTCCCTGTGTTTTGAGA
TGCGTTTCGATGTCAGCTTCTGTTGGTTGTTGTAGATTGGAAGCAGTGGT
TCGTGATCTGTCCATCCGGTGAAGGAGCTCCCAACCACGTAGTACCGAAA
TTGTTCCAACCCCCATTGTAAACCAAGGCTTTCCCTCTCAATTGGGCTGT
AGTCCTGTTCTTGTTGTGTTAGTGCACGGCTAACATGGTCGATTGGTACC
CAGGTTTTGGTTCCTGTTTCCCGTGTCTTCTCTTGGTAGATGCTGCATTG
GGTGCCAACTTCTGATGTGTCTGCCACTATGTGCGTCTTTCTTTGCGGGT
TGTACGACTGTAGTGTTGCTGGGTTGTTCAGTATGGTCATTAGTTTTTGA
TATGCTTGTTCTTGTTCTGTTCCCCATATGAATTTCTGGTCCTTCTTGAG
AAGTCGTCGAAGTGGTGCGGTAACCTCTTCATAGCTGAGTTTTAGCGAAT
TGTCATACGTGAATTTTGCATTGTACTGACATGCCATGAGCAGAGATCTC
ACATCTTCTGTGTTGTTCGGCCTTCCTCCTTCTTGGATGTTTCTGATCTT
GTCTTGGTCCGCTGTGACACCGTTGGAGTGAAAGTCTCTTCCAAACCACT
TGACTCGGGTTAGGCAGAAGTTGGATTTTGAGAGTTTGAGTATGATTCCA
GCTTCGGCACATCTATTCAGCACTTGTTTCAGGTTGGTGTAGTGGTCGTC
GTAGTCCTTGCCATATACCAGTATGTTGTCATGGAGGGTGACGACGCCTT
TGAGTCCAGCGAAGCATTTTCTGACTTCGTTGTGGAATATGCCACTTGAT
GCTGTCGGCCCGAAGTAGAGACGTTCCATTCGATGGAGGCCTTCATGGGT
CTGGAAGATGCTCTTTTTCTTTGTGGCTTCGTCTAGTGGAAGTTGGTGGA
ATCCCCAACCCATGTCCATCTCACTGAACACGGTGGCTTCCTTCAATTCG
TGACGTATCTCTTGGGGTGTTTGAACATGGAATTTGGTCCGTTGCATTCC
CGGGTTTCTGGGTGTGTTGTCGATGTTCATACGTGTCTGCCCATTTTTCT
TGTCTGTGATGACCACGTTCATTACGCAGTCGTAGCTGTTGCGTGGATCG
ACATCTGTTATGACACCCTGTTCCCGAAGGAACTGGAGTAGCTTGCTCAC
GTCTTCTTGGTAGTGGAATGGGATGTTTCTGAAAGGTTGTTGTTTTGGCT
TGAAGTCTTTGGCGTACTCGAGGTGTATGGGTTCGATCTTTAGACACCCA
ACCTTGTTGTCGTCGAAGACTAGATCTCTGAACTTTTCGACGAGTGTCTG
CGCTTTAACTCGCTCTTGTGGAACGGCTGTGGTGTTTGGTGGGTGTGTTT
CAACATCTACTTCAAGGTTTCGTCTTATCTTGTCTGGGATTCGTCTGATA
GGTGTCCCTGTTGGTTCTCTGCCATCTTTGTTGAAAGTGATGATGCCAAG
CTTCTCTGCATCTGTGTCACCAAGGAGGGGTTCTGGTTGGAAACCATCGA
TGACATAGACTTTGCTGTACACATGGGCTCCTTTGCTGTTGTGTATTGTT
GTGTTGACCATCCCCTGCACATCTAGGAGGTTGTTTCCACCCCATGGTCT
GAAGTTGAGGTCTGACTCTTCTAGCTCACCCATCAAGGGGGAGTAGTGTT
GCGGAGTTATGATGGTGAATTCACTGCCGGTGTCAGCGTACAACTTTTGT
TTGATCCCTCCAATCTCCACGTCCACCCACTTGTTGTTTGGTGTTGTGGT
GGAGACCTTGTTGATGGTGGCTGACTCCTTGGTTGTTGCTGTATGTGTTT
TCTTCTCTTGTACCTGGCTTCTTTTCCTCTCTGTGCTGACCCTCTTGATT
GTCTTGGGGCAAGCAGGTGTCTTTGCAAAATGGTTTTTTCCTTGGCATAC
AAAACAGGACTTCCCATTGGCTGGGCAGCGCTCAGGTTGGTGTTCTGAGT
TGCATCTGTTGCACTGTTGTTTCTTGTTTCTGTTGCTGTATCGTCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039731XLOC_039731Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063400-proteinTCONS_00063400-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063400-exon-scaffold_388-1491911889:49227..53187TCONS_00063400-exon-scaffold_388-1491911889:49227..53187Clytia hemisphaericaexon
TCONS_00063400-exon-scaffold_388-1510915933:49227..53187TCONS_00063400-exon-scaffold_388-1510915933:49227..53187Clytia hemisphaericaexon
TCONS_00063400-exon-scaffold_388-1575043694:49227..53187TCONS_00063400-exon-scaffold_388-1575043694:49227..53187Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_388supercontigscaffold_388:49227..53187 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.304088 0.221299 0.385424 0.326224 0.16577 0.241834 0.37686 0.500765 0.31121 0.434272 0.75681 0.574294 0.863084 1.12323 0.0966465 0.149813 0.0638851 0.109134 0.0612247 0.105183 0.137134 0.133779 0.0216834 0.0295701 0.182739 1.47687 0.20745 0.221396 0.283367 0.278013
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR012337RNaseH-like_dom
IPR021109Peptidase_aspartic_dom
IPR001584Integrase_cat-core
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
Vocabulary: Biological Process
TermDefinition
GO:0015074DNA integration
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015074 DNA integration
molecular_function GO:0003676 nucleic acid binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00063400 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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