TCONS_00063397 (transcript) - C. hemisphaerica

Overview
NameTCONS_00063397
Unique NameTCONS_00063397
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length647

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00063397 ID=TCONS_00063397|Name=TCONS_00063397|organism=Clytia hemisphaerica|type=transcript|length=647bp
CAACCTTGTTTCATCACCGTCCAGACCATCATGTCAATCCGGAGATCTCA
AAGAATTGCAGGACAAGGGCCTGATCATTCCACTGACCTGGCCAAACTGA
TATCTCTAAGGAACACTCGAAGAGGTCTTCTGGGATATCTTACACGGGTG
GTGGTGGTCTTGTTGAGACTTACTTAAAATTCAGAGCGGCAAACACAGAA
TATCTTATCTATGAAACTGACGAAAGAAGGATACAAGAATGCACAGAGAC
TGAAGCTAGAGAGGCTAATCGCATCGCTGAAATAGAGCATGAGATTCGTA
CGAGATTGAGAACACCAAACCTTTCCAACACTACACCTGATACAAGTCTG
TATGATGTAGATCCATCTGAAACTTCCAACATATCGGGTCATGATAAACG
TACTAACGTATTCAATCCTCGTATTCGTATACCTGTTGGCTCCAGTGGAA
ACTCACCTACTGTTTCTCATATCGAATCACCTCCGAACTCAGCTATTTAC
CACTCACCTGTCCAATCACAACCTCTTCAACGAAGTCTATCTCAGGTGAG
ATTTATTCCATGTCCACCTTCGGTGTCTTCTGTCACAGCAAAGCCACGAA
GCAGCTTCCGACGTCTACGCCAAAAGGCATCTACATCATCAGTTGAT
Run BLAST on NCBI

transcript from alignment at scaffold_388:25162..25808

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00063397 ID=TCONS_00063397|Name=TCONS_00063397|organism=Clytia hemisphaerica|type=transcript|length=647bp|location=Sequence derived from alignment at scaffold_388:25162..25808 (Clytia hemisphaerica)
ATCAACTGATGATGTAGATGCCTTTTGGCGTAGACGTCGGAAGCTGCTTC
GTGGCTTTGCTGTGACAGAAGACACCGAAGGTGGACATGGAATAAATCTC
ACCTGAGATAGACTTCGTTGAAGAGGTTGTGATTGGACAGGTGAGTGGTA
AATAGCTGAGTTCGGAGGTGATTCGATATGAGAAACAGTAGGTGAGTTTC
CACTGGAGCCAACAGGTATACGAATACGAGGATTGAATACGTTAGTACGT
TTATCATGACCCGATATGTTGGAAGTTTCAGATGGATCTACATCATACAG
ACTTGTATCAGGTGTAGTGTTGGAAAGGTTTGGTGTTCTCAATCTCGTAC
GAATCTCATGCTCTATTTCAGCGATGCGATTAGCCTCTCTAGCTTCAGTC
TCTGTGCATTCTTGTATCCTTCTTTCGTCAGTTTCATAGATAAGATATTC
TGTGTTTGCCGCTCTGAATTTTAAGTAAGTCTCAACAAGACCACCACCAC
CCGTGTAAGATATCCCAGAAGACCTCTTCGAGTGTTCCTTAGAGATATCA
GTTTGGCCAGGTCAGTGGAATGATCAGGCCCTTGTCCTGCAATTCTTTGA
GATCTCCGGATTGACATGATGGTCTGGACGGTGATGAAACAAGGTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039728XLOC_039728Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063397-exon-scaffold_388-1491911889:25162..25808TCONS_00063397-exon-scaffold_388-1491911889:25162..25808Clytia hemisphaericaexon
TCONS_00063397-exon-scaffold_388-1510915933:25162..25808TCONS_00063397-exon-scaffold_388-1510915933:25162..25808Clytia hemisphaericaexon
TCONS_00063397-exon-scaffold_388-1575043694:25162..25808TCONS_00063397-exon-scaffold_388-1575043694:25162..25808Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_388supercontigscaffold_388:25162..25808 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.85457	1.79615	1.09355	1.214	5.6904	5.46933	3.78458	4.41038	1.4058	2.5619	2.67227	1.96047	1.23199	1.2117	0.482351	0.764324	0.801067	1.35424	0	0.267996	1.49674	1.3568	0.9633	0.926567	1.44771	0.589602	1.65183	1.25332	1.32149	1.12488
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00063397 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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