TCONS_00063393 (transcript) - C. hemisphaerica

Overview
NameTCONS_00063393
Unique NameTCONS_00063393
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1100

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00063393 ID=TCONS_00063393|Name=TCONS_00063393|organism=Clytia hemisphaerica|type=transcript|length=1100bp
TGTACATTATTTTACCTAGTCGACATTTTTCTTTCATAGGCCTATGtaca
tatttttagtttttgaactttgtgttTTTAGCTTGAACAACAATCAACAA
GATcttcaagaaaatatttgggAATCAAGTGGACAACAATCAAGTTTTGG
AGGACAAAGTTTTGGTGGGACAATCAAGTGGAGAACTTGGACAATGCTGA
GAGGAAGAGACACATGTCAGAGGTATACCTTAAACTTTGGCTTGGAAATT
TGAAGATAGCTCACAATCTTCTTCGTCTCTCAAGTCCTATCGTCTGGAAA
ATCGCCTATCGTTTGGAACATACTCTCTCTGATACCCTCCATATTGTTTC
CGCTACCCCCTCNCTATCGTCTGGAAAATCGCCTATCGTTTGGAACATAC
TCTCTCTGATACCCTCCATATTGTTTCCGCTACCCTCTCATTCGGAAAAG
GCCGTCCGAATATCATCCTCCAATCGCACGTTCGGAAATCGTCTATCCAA
CGCCCGTTGTCCTCCCAAATTTATCGTTTCCGGGATTCACTCTATCCGGA
ATTCTCTCCTACCGTATCGTCACAGATACTCCATTTCGTTCAGANTTCAC
TGAGGAAGCACTTCACACGTTCCTCCTTGAAGTTGAATCAACTATCAATT
CGCGACCACTCACACCACTGAGTGACAACATCAACGATTTTGAAGCTCTC
ACCCCTAACCACTTTCTATTAGGAAGAGCTTCACCCAATCTTCCAATCAT
TTATAACGCTCAACAAAACAACCTGAAGAGCAAGTGGAAGTAGGTCCAAT
CAACACTTGACGAATTTTGGAAGAGATGGGCAAAGGAGTACCTACCTACA
ATCAACGAACGAGCTAAATGGCGCCATCCAATACGGAACACTAAAGAAGG
GGATTTAGTCGTCATCAGCGAAAAGGACATCCCAAGAAACAAATGGCCAT
TGGCACGCGTTGTTAGTGTCATCACATCAGATGATGGCATCACAAGGATT
GCAAAGGTCAAGACGTCTGACGGTTCGATATACACTAGGCCAACCGGTAG
CCTAGGCTTGTTGGAAGACGGAACCTCATCCAATTGACGATTGCCCTGTC
Run BLAST on NCBI

transcript from alignment at scaffold_388:18024..19203-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00063393 ID=TCONS_00063393|Name=TCONS_00063393|organism=Clytia hemisphaerica|type=transcript|length=1180bp|location=Sequence derived from alignment at scaffold_388:18024..19203- (Clytia hemisphaerica)
TGTACATTATTTTACCTAGTCGACATTTTTCTTTCATAGGCCTATGTACA
TATTTTTAGTTTTTGAACTTTGTGTTTTTAGCTTGAACAACAATCAACAA
GATTCCTACGTTCCAAGATTTTTGACTCAACTATCCCTAACANTCCTACG
TTCCAAGATTTTTGACTCAACTATCCCTAACATCTTCAAGAAAATATTTG
GGAATCAAGTGGACAACAATCAAGTTTTGGAGGACAAAGTTTTGGTGGGA
CAATCAAGTGGAGAACTTGGACAATGCTGAGAGGAAGAGACACATGTCAG
AGGTATACCTTAAACTTTGGCTTGGAAATTTGAAGATAGCTCACAATCTT
CTTCGTCTCTCAAGTCCTATCGTCTGGAAAATCGCCTATCGTTTGGAACA
TACTCTCTCTGATACCCTCCATATTGTTTCCGCTACCCCCTCNCTATCGT
CTGGAAAATCGCCTATCGTTTGGAACATACTCTCTCTGATACCCTCCATA
TTGTTTCCGCTACCCTCTCATTCGGAAAAGGCCGTCCGAATATCATCCTC
CAATCGCACGTTCGGAAATCGTCTATCCAACGCCCGTTGTCCTCCCAAAT
TTATCGTTTCCGGGATTCACTCTATCCGGAATTCTCTCCTACCGTATCGT
CACAGATACTCCATTTCGTTCAGANTTCACTGAGGAAGCACTTCACACGT
TCCTCCTTGAAGTTGAATCAACTATCAATTCGCGACCACTCACACCACTG
AGTGACAACATCAACGATTTTGAAGCTCTCACCCCTAACCACTTTCTATT
AGGAAGAGCTTCACCCAATCTTCCAATCATTTATAACGCTCAACAAAACA
ACCTGAAGAGCAAGTGGAAGTAGGTCCAATCAACACTTGACGAATTTTGG
AAGAGATGGGCAAAGGAGTACCTACCTACAATCAACGAACGAGCTAAATG
GCGCCATCCAATACGGAACACTAAAGAAGGGGATTTAGTCGTCATCAGCG
AAAAGGACATCCCAAGAAACAAATGGCCATTGGCACGCGTTGTTAGTGTC
ATCACATCAGATGATGGCATCACAAGGATTGCAAAGGTCAAGACGTCTGA
CGGTTCGATATACACTAGGCCAACCGGTAGCCTAGGCTTGTTGGAAGACG
GAACCTCATCCAATTGACGATTGCCCTGTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039725XLOC_039725Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063393-exon-scaffold_388-1575043694:19103..19203TCONS_00063393-exon-scaffold_388-1575043694:19103..19203Clytia hemisphaericaexon
TCONS_00063393-exon-scaffold_388-1575043694:18024..19022TCONS_00063393-exon-scaffold_388-1575043694:18024..19022Clytia hemisphaericaexon
TCONS_00063393-exon-scaffold_388-1510915933:19103..19203TCONS_00063393-exon-scaffold_388-1510915933:19103..19203Clytia hemisphaericaexon
TCONS_00063393-exon-scaffold_388-1510915933:18024..19022TCONS_00063393-exon-scaffold_388-1510915933:18024..19022Clytia hemisphaericaexon
TCONS_00063393-exon-scaffold_388-1491911889:19103..19203TCONS_00063393-exon-scaffold_388-1491911889:19103..19203Clytia hemisphaericaexon
TCONS_00063393-exon-scaffold_388-1491911889:18024..19022TCONS_00063393-exon-scaffold_388-1491911889:18024..19022Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_388supercontigscaffold_388:18024..19203 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.89747	2.791	1.42553	0.949858	9.9628	7.94398	3.64631	4.34547	2.11826	3.90501	2.96041	2.45317	1.30992	0.989696	0.975562	1.17102	0.738379	1.48552	0.140093	0.398632	1.52493	0.799027	0.958743	0.979613	1.3086	1.02607	1.9856	2.24506	1.16217	0.688128
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00063393 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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