|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00063389 ID=TCONS_00063389|Name=TCONS_00063389|organism=Clytia hemisphaerica|type=transcript|length=773bp
CCAAGGTTCATGATGGGAAAAGAGGAAGATATCAAGGCCACAGCTTATGA
AAAACTTCTCGCAGAAACGAAGAAAATGTTGAGGGATTTGGAGGATTATT
GGTATCTTTTACCAAATCAAATATGTTCGGCTGGAATTgcttcaccaaat
aacactaaTTGTTGGAACGGCCAAAACACTAATGGTTACACGAAACCAGT
GGTAAAAGGAAATCTCAAAGACCTTTTCAACTCTAACCCAGAAATGGATT
TGACATCAAAATCTAAAGAGTACGATAGTGGCGTATTGACACTGGAAGCC
AAACTTCAAGATATTATCATACAAATCGATTCGGTGATGAGAGGCAACGG
TATCGTGCAGCCAGATACTGAAGCCTCAGGTTCTGGCAGTGGTGACGACA
GTTCTGGCGATAATGACAATGAAGGGAGTGGTGAACGACCTGCCACTACT
GAGGAACCAGAGGAAGGTTCTGCGACAGGCAGCGGTGACGACAGTTCTGG
CGATAATGACAATGAAGGGAGTGGTGAACGACCTGCCACTACTGAGGAAC
CAGAGGAAGGTTCTGCGACAGGCAGCGGTGACGGGAAGAATGGTGGTGGT
ACCACCTTCACAACGAACTTTTCTTTCATATCTACACTGGCCGTATTAAT
AGTTTACTGGATCTGGTAATAAGTTTAACATGATTATATTTGCTGCACTC
TCGACGGTGTTGCTCGAGGTATAATACTTTTAAAAGAAGGGTGATATGAG
TGCCCAATCGAAGGGAATGCTCC Run BLAST on NCBI protein sequence of TCONS_00063389-protein >TCONS_00063389-protein ID=TCONS_00063389-protein|Name=TCONS_00063389-protein|organism=Clytia hemisphaerica|type=polypeptide|length=222bp
PRFMMGKEEDIKATAYEKLLAETKKMLRDLEDYWYLLPNQICSAGIASPN
NTNCWNGQNTNGYTKPVVKGNLKDLFNSNPEMDLTSKSKEYDSGVLTLEA
KLQDIIIQIDSVMRGNGIVQPDTEASGSGSGDDSSGDNDNEGSGERPATT
EEPEEGSATGSGDDSSGDNDNEGSGERPATTEEPEEGSATGSGDGKNGGG
TTFTTNFSFISTLAVLIVYWIW Run BLAST on NCBI transcript from alignment at scaffold_388:29465..31291+ Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00063389 ID=TCONS_00063389|Name=TCONS_00063389|organism=Clytia hemisphaerica|type=transcript|length=1827bp|location=Sequence derived from alignment at scaffold_388:29465..31291+ (Clytia hemisphaerica)
CCAAGGTTCATGATGGGAAAAGAGGAAGATATCAAGGCCACAGCTTATGA
AAAGtgagttgttgtttttttgtttattttgggcTTCTTTTAGAAAGAAA
GTCTGGTTGACTTCCGTCAACACTTTGGTTTTGTCTGTCTTTGGAAAGAT
GACCCCCTAGATTTGTTCTTTTTGACGATCTGTTATATAACTGACATAAA
GATATCACAACAAGTAGATCGATAAAGATCGATCAATTGAACACATTTCT
TTTGATTATTACACCATGAATTGAGTAACGCCCTCTTATTCCCTCCAAAG
CCAAAAGGCGTTCTTTAGTCAATTGAGTAAAAAGAAGGGTTGAtaaaatc
aacctttccaatTTCCGACCTAATTATAAcgaaatttgttttttgttgtg
tttttcgACTACACTACTTTCTAACTTCACGAGAGTTTTATTTCAAAggc
ttttacattttttcacgCCTTTTTGACACGCCCTTTTTGCTGACTGACGC
TAGGTAGGTTTGAAGGTTTTAGCATGCTTGGACACTGCTAGTAACTTTTG
TCTCCCCTTTCATTCAGACTTCTCGCAGAAACGAAGAAAATGTTGAGGGA
TTTGGAGGATTATTGGTATCTTTTACCAAATCAAATATGTTCGGCTGGAA
TTgcttcaccaaataacactaaTTGTTGGAACGGCCAAAACACTAATGGG
TAAGTGAAAAATAATACGAAATATCCTTTTCAGGGGACTTTTTGACGAGG
GCAGACGAGGGCCTTTGAATTGTATTGAATTGTACTGATAACAAATGAAT
ACATATATTACAAAAGCACTACGCGTCGCATACGTCACTATTATCTTAGC
TAAAATTGTACTACTTTAAATTTATTTCGAAATGGTTGGAAAACTGAGAA
AGATTACTTTTTTCGTATTGTAAGCATTTAATTAACGTGCAAGATCAATT
AACGCAAAGAAGGACGGGACTGAAAGTCGTACAAAcaagaaaatttatta
tttgTATATTAAGTATTAAGTGTAATTATAAAAGTAAGTAGAATTGGGTG
TCATTGATTAAAGTCGTgatggaaattttaaaaagtacCCGAACTTCCAA
ATAGATTAATCCGTGAAATGTCAAAAATGTGAGGAAGAGCTCAACCGCTT
AAGTTTATAATTCGTGCGAAATATAATCACTTGAAATGCGACCCCTGATC
GAATTCGGTGAAAAAAAATGATTCCGCTTTCTTTTCCAGTTACACGAAAC
CAGTGGTAAAAGGAAATCTCAAAGACCTTTTCAACTCTAACCCAGAAATG
GATTTGACATCAAAATCTAAAGAGTACGATAGTGGCGTATTGACACTGGA
AGCCAAACTTCAAGATATTATCATACAAATCGATTCGGTGATGAGAGGCA
ACGGTATCGTGCAGCCAGATACTGAAGCCTCAGGTTCTGGCAGTGGTGAC
GACAGTTCTGGCGATAATGACAATGAAGGGAGTGGTGAACGACCTGCCAC
TACTGAGGAACCAGAGGAAGGTTCTGCGACAGGCAGCGGTGACGACAGTT
CTGGCGATAATGACAATGAAGGGAGTGGTGAACGACCTGCCACTACTGAG
GAACCAGAGGAAGGTTCTGCGACAGGCAGCGGTGACGGGAAGAATGGTGG
TGGTACCACCTTCACAACGAACTTTTCTTTCATATCTACACTGGCCGTAT
TAATAGTTTACTGGATCTGGTAATAAGTTTAACATGATTATATTTGCTGC
ACTCTCGACGGTGTTGCTCGAGGTATAATACTTTTAAAAGAAGGGTGATA
TGAGTGCCCAATCGAAGGGAATGCTCC Coding sequence (CDS) from alignment at scaffold_388:29465..31291+ >TCONS_00063389 ID=TCONS_00063389|Name=TCONS_00063389|organism=Clytia hemisphaerica|type=CDS|length=2007bp|location=Sequence derived from alignment at scaffold_388:29465..31291+ (Clytia hemisphaerica)
CCAAGGTTCATGATGGGAAAAGAGGAAGATATCAAGGCCACAGCTTATGA
AAAACTTCTCGCAGAAACGAAGAAAATGTTGAGGGATTTGGAGGATTATT
GGTATCTTTTACCAAATCAAATATGTTCGGCTGGAATTgcttcaccaaat
aacactaaTTGTTGGAACGGCCAAAACACTAATGGTTACACGAAACCAGT
GGTAAAAGGAAATCTCAAAGACCTTTTCAACTCTAACCCAGAAATGGATT
TGACATCAAAATCTAAAGAGTACGATAGTGGCGTATTGACACTGGAAGCC
AAACTTCAAGATATTATCATACAAATCGATTCGGTGATGAGAGGCAACGG
TATCGTGCAGCCAGATACTGAAGCCTCAGGTTCTGGCAGTGGTGACGACA
GTTCTGGCGATAATGACAATGAAGGGAGTGGTGAACGACCTGCCACTACT
GAGGAACCAGAGGAAGGTTCTGCGACAGGCAGCGGTGACGACAGTTCTGG
CGATAATGACAATGAAGGGAGTGGTGAACGACCTGCCACTACTGAGGAAC
CAGAGGAAGGTTCTGCGACAGGCAGCGGTGACGGGAAGAATGGTGGTGGT
ACCACCTTCACAACGAACTTTTCTTTCATATCTACACTGGCCGTATTAAT
AGTTTACTGGATCTGGTAACCAAGGTTCATGATGGGAAAAGAGGAAGATA
TCAAGGCCACAGCTTATGAAAAACTTCTCGCAGAAACGAAGAAAATGTTG
AGGGATTTGGAGGATTATTGGTATCTTTTACCAAATCAAATATGTTCGGC
TGGAATTgcttcaccaaataacactaaTTGTTGGAACGGCCAAAACACTA
ATGGTTACACGAAACCAGTGGTAAAAGGAAATCTCAAAGACCTTTTCAAC
TCTAACCCAGAAATGGATTTGACATCAAAATCTAAAGAGTACGATAGTGG
CGTATTGACACTGGAAGCCAAACTTCAAGATATTATCATACAAATCGATT
CGGTGATGAGAGGCAACGGTATCGTGCAGCCAGATACTGAAGCCTCAGGT
TCTGGCAGTGGTGACGACAGTTCTGGCGATAATGACAATGAAGGGAGTGG
TGAACGACCTGCCACTACTGAGGAACCAGAGGAAGGTTCTGCGACAGGCA
GCGGTGACGACAGTTCTGGCGATAATGACAATGAAGGGAGTGGTGAACGA
CCTGCCACTACTGAGGAACCAGAGGAAGGTTCTGCGACAGGCAGCGGTGA
CGGGAAGAATGGTGGTGGTACCACCTTCACAACGAACTTTTCTTTCATAT
CTACACTGGCCGTATTAATAGTTTACTGGATCTGGTAACCAAGGTTCATG
ATGGGAAAAGAGGAAGATATCAAGGCCACAGCTTATGAAAAACTTCTCGC
AGAAACGAAGAAAATGTTGAGGGATTTGGAGGATTATTGGTATCTTTTAC
CAAATCAAATATGTTCGGCTGGAATTgcttcaccaaataacactaaTTGT
TGGAACGGCCAAAACACTAATGGTTACACGAAACCAGTGGTAAAAGGAAA
TCTCAAAGACCTTTTCAACTCTAACCCAGAAATGGATTTGACATCAAAAT
CTAAAGAGTACGATAGTGGCGTATTGACACTGGAAGCCAAACTTCAAGAT
ATTATCATACAAATCGATTCGGTGATGAGAGGCAACGGTATCGTGCAGCC
AGATACTGAAGCCTCAGGTTCTGGCAGTGGTGACGACAGTTCTGGCGATA
ATGACAATGAAGGGAGTGGTGAACGACCTGCCACTACTGAGGAACCAGAG
GAAGGTTCTGCGACAGGCAGCGGTGACGACAGTTCTGGCGATAATGACAA
TGAAGGGAGTGGTGAACGACCTGCCACTACTGAGGAACCAGAGGAAGGTT
CTGCGACAGGCAGCGGTGACGGGAAGAATGGTGGTGGTACCACCTTCACA
ACGAACTTTTCTTTCATATCTACACTGGCCGTATTAATAGTTTACTGGAT
CTGGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00063389-exon-scaffold_388-1491911889:29465..29517 | TCONS_00063389-exon-scaffold_388-1491911889:29465..29517 | Clytia hemisphaerica | exon |
| TCONS_00063389-exon-scaffold_388-1510915933:29465..29517 | TCONS_00063389-exon-scaffold_388-1510915933:29465..29517 | Clytia hemisphaerica | exon |
| TCONS_00063389-exon-scaffold_388-1575043694:29465..29517 | TCONS_00063389-exon-scaffold_388-1575043694:29465..29517 | Clytia hemisphaerica | exon |
| TCONS_00063389-exon-scaffold_388-1491911889:30032..30163 | TCONS_00063389-exon-scaffold_388-1491911889:30032..30163 | Clytia hemisphaerica | exon |
| TCONS_00063389-exon-scaffold_388-1510915933:30032..30163 | TCONS_00063389-exon-scaffold_388-1510915933:30032..30163 | Clytia hemisphaerica | exon |
| TCONS_00063389-exon-scaffold_388-1575043694:30032..30163 | TCONS_00063389-exon-scaffold_388-1575043694:30032..30163 | Clytia hemisphaerica | exon |
| TCONS_00063389-exon-scaffold_388-1491911889:30704..31291 | TCONS_00063389-exon-scaffold_388-1491911889:30704..31291 | Clytia hemisphaerica | exon |
| TCONS_00063389-exon-scaffold_388-1510915933:30704..31291 | TCONS_00063389-exon-scaffold_388-1510915933:30704..31291 | Clytia hemisphaerica | exon |
| TCONS_00063389-exon-scaffold_388-1575043694:30704..31291 | TCONS_00063389-exon-scaffold_388-1575043694:30704..31291 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_388 | supercontig | scaffold_388:29465..31291 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR001863 | Glypican |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0043395 | heparan sulfate proteoglycan binding |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0005578 | proteinaceous extracellular matrix |
| GO:0016020 | membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| cellular_component |
GO:0016020 |
membrane |
| cellular_component |
GO:0005578 |
proteinaceous extracellular matrix |
| molecular_function |
GO:0043395 |
heparan sulfate proteoglycan binding |
Blast
The following BLAST results are available for this feature:
|
