TCONS_00063375 (transcript) - C. hemisphaerica

Overview
NameTCONS_00063375
Unique NameTCONS_00063375
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length849

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00063375 ID=TCONS_00063375|Name=TCONS_00063375|organism=Clytia hemisphaerica|type=transcript|length=849bp
CTGCCATTATCAAAGCAAATGAGGAAAATGAAAACCTGAAGGAGCAAGTT
CGCATCTTGAATCAGAGTAATCAAGGACTACAGCAACAACTCCAACAGCA
ACAACTTCAACAGCAACAACCACAGCagcaaccacaacaacaacagcaac
cgCCACAACAACCGCCACAAATGGTTGAATTATCTCCAGGCACTGGAGTG
ATGGTCATGCATGAAACCCTTTGTGTTGCTCTGTTGAAGCTTCTTGCAAA
TGATTGCCTTCCTTATTTGATTAGAAGATTCTTTACCCATCAAACACAGA
CACGTCTGACTGTGGAGGAGGAGGAGACCGACACTCACACCATAATTCCT
CCTCATATTAAGCATGCTATTTTCCaattttgtcTTGTTAATTGTCAAGA
CAAGTTGGAACGTACAAAGAAGGGAGTCCAACCTCAATTGGTAAAATGTA
CACTGCCAAGATTAAAGGTCTTTTGCACCAGGACCTTTCAAATGGCAAGG
ACCTATctgaaaaaaagcaaaagtcTGCCAACCAGGCATGAGTCCGGGAG
ATATTAGATAATGTTTCTTGAAATAATTGCGGTTCGCTCGCAACAACAGT
TTTACACTGctccatatttcttttcttttgtatcACATTTAATTTGTTAC
TATCTTGACACAATTAACTTGACACTGTGGTACAAGAactctactttaat
gggataaattttcgcggggattaaatttcgcggttgagctcatccgcaaa
atttttagatttcgcggggattaattttcgcggatggcactattgggggc
attattttctcgattttgtgacttttactgtcaaatcatgcatattggN
Run BLAST on NCBI

protein sequence of TCONS_00063375-protein

>TCONS_00063375-protein ID=TCONS_00063375-protein|Name=TCONS_00063375-protein|organism=Clytia hemisphaerica|type=polypeptide|length=184bp
AIIKANEENENLKEQVRILNQSNQGLQQQLQQQQLQQQQPQQQPQQQQQP
PQQPPQMVELSPGTGVMVMHETLCVALLKLLANDCLPYLIRRFFTHQTQT
RLTVEEEETDTHTIIPPHIKHAIFQFCLVNCQDKLERTKKGVQPQLVKCT
LPRLKVFCTRTFQMARTYLKKSKSLPTRHESGRY
Run BLAST on NCBI

transcript from alignment at scaffold_387:15128..16618-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00063375 ID=TCONS_00063375|Name=TCONS_00063375|organism=Clytia hemisphaerica|type=transcript|length=1491bp|location=Sequence derived from alignment at scaffold_387:15128..16618- (Clytia hemisphaerica)
CTGCCATTATCAAAGCAAATGAGGAAAATGAAAACCTGAAGGAGCAAGTT
CGCATCTTGAATCAGAGTGTAAGTAGTAGAAATATACCTTAGATCTTTTA
CATAAGGTTCAATTGTCTACTGAAAGTCGACCAGATATTTAAATGTACTT
TAATGGGACATGCTATTATAAACCTATTGTCAATTTAGAATCAAGGACTA
CAGCAACAACTCCAACAGCAACAACTTCAACAGCAACAACCACAGCAGCA
ACCACAACAACAACAGCAACCGCCACAACAACCGCCACAAATGGTTGAAT
TATCTCCAGGCACTGGAGTGATGGTCATGCATGAAACCCTTTGTGTTGCT
CTGTTGAAGCTTCTTGCAAATGATTGCCTTCCTTATTTGATTAGAAGGTT
ACTACTTTACTTTGCTTAAATTGCTGTATGGATATTATACATCTGTCAAT
AAAAAAGTCTTGCAGATTTTAATAAATTAAAAATCTTTGTAATTTAAGCC
TATTACTAAAAAATGTTCTTGATTACTCATTAAAGCCATTTAATTGCATT
GGGAATAATTTATAATAATTTTTATATACAGTTTGGAATGTGACTGCTTT
TTTAACGGAAACAGTCTACTTTTTTTATCTTAAGATTCTTTACCCATCAA
ACACAGACACGTCTGACTGTGGAGGAGGAGGAGACCGACACTCACACCAT
AATTCCTCCTCATATTAAGCATGCTATTTTCCGTAAGTTGCTTTTTGTCT
CTACTAACTCTTGGTAATCATTTGTTTGTTGGCAATTATTGTGAATTTTC
TTGGTATCTAAAAGGCACTTTCGCTTCAAGATGATTTTTGAAGTACTTTA
GGAGAAGAAACTTTTGTGGGAAGAAATATTCCCAAAATATTCGCATGTCA
CAAAAGAAAACTTTCGTACTTTGGACATTTCGCAAAAGTTTCTTTTCCTA
ACGTATGTAACATTTTCTGCATTTTAACTCATTCACAAAGTTTAATAACC
AAATTATTTTTTTTCAGAATTTTGTCTTGTTAATTGTCAAGACAAGTTGG
AACGTACAAAGAAGGGAGTCCAACCTCAATTGGTAAAATGTACACTGCCA
AGATTAAAGGTCTTTTGCACCAGGACCTTTCAAATGGCAAGGACCTATCT
GAAAAAAAGCAAAAGTCTGCCAACCAGGCATGAGTCCGGGAGATATTAGA
TAATGTTTCTTGAAATAATTGCGGTTCGCTCGCAACAACAGTTTTACACT
GCTCCATATTTCTTTTCTTTTGTATCACATTTAATTTGTTACTATCTTGA
CACAATTAACTTGACACTGTGGTACAAGAACTCTACTTTAATGGGATAAA
TTTTCGCGGGGATTAAATTTCGCGGTTGAGCTCATCCGCAAAATTTTTAG
ATTTCGCGGGGATTAATTTTCGCGGATGGCACTATTGGGGGCATTATTTT
CTCGATTTTGTGACTTTTACTGTCAAATCATGCATATTGGN

Coding sequence (CDS) from alignment at scaffold_387:15128..16618-

>TCONS_00063375 ID=TCONS_00063375|Name=TCONS_00063375|organism=Clytia hemisphaerica|type=CDS|length=2220bp|location=Sequence derived from alignment at scaffold_387:15128..16618- (Clytia hemisphaerica)
AATTTTGTCTTGTTAATTGTCAAGACAAGTTGGAACGTACAAAGAAGGGA
GTCCAACCTCAATTGGTAAAATGTACACTGCCAAGATTAAAGGTCTTTTG
CACCAGGACCTTTCAAATGGCAAGGACCTATCTGAAAAAAAGCAAAAGTC
TGCCAACCAGGCATGAGTCCGGGAGATATTAGATTCTTTACCCATCAAAC
ACAGACACGTCTGACTGTGGAGGAGGAGGAGACCGACACTCACACCATAA
TTCCTCCTCATATTAAGCATGCTATTTTCCAATCAAGGACTACAGCAACA
ACTCCAACAGCAACAACTTCAACAGCAACAACCACAGCAGCAACCACAAC
AACAACAGCAACCGCCACAACAACCGCCACAAATGGTTGAATTATCTCCA
GGCACTGGAGTGATGGTCATGCATGAAACCCTTTGTGTTGCTCTGTTGAA
GCTTCTTGCAAATGATTGCCTTCCTTATTTGATTAGAAGGCCATTATCAA
AGCAAATGAGGAAAATGAAAACCTGAAGGAGCAAGTTCGCATCTTGAATC
AGAGTAATTTTGTCTTGTTAATTGTCAAGACAAGTTGGAACGTACAAAGA
AGGGAGTCCAACCTCAATTGGTAAAATGTACACTGCCAAGATTAAAGGTC
TTTTGCACCAGGACCTTTCAAATGGCAAGGACCTATCTGAAAAAAAGCAA
AAGTCTGCCAACCAGGCATGAGTCCGGGAGATATTAGATTCTTTACCCAT
CAAACACAGACACGTCTGACTGTGGAGGAGGAGGAGACCGACACTCACAC
CATAATTCCTCCTCATATTAAGCATGCTATTTTCCAATCAAGGACTACAG
CAACAACTCCAACAGCAACAACTTCAACAGCAACAACCACAGCAGCAACC
ACAACAACAACAGCAACCGCCACAACAACCGCCACAAATGGTTGAATTAT
CTCCAGGCACTGGAGTGATGGTCATGCATGAAACCCTTTGTGTTGCTCTG
TTGAAGCTTCTTGCAAATGATTGCCTTCCTTATTTGATTAGAAGGCCATT
ATCAAAGCAAATGAGGAAAATGAAAACCTGAAGGAGCAAGTTCGCATCTT
GAATCAGAGTAATTTTGTCTTGTTAATTGTCAAGACAAGTTGGAACGTAC
AAAGAAGGGAGTCCAACCTCAATTGGTAAAATGTACACTGCCAAGATTAA
AGGTCTTTTGCACCAGGACCTTTCAAATGGCAAGGACCTATCTGAAAAAA
AGCAAAAGTCTGCCAACCAGGCATGAGTCCGGGAGATATTAGATTCTTTA
CCCATCAAACACAGACACGTCTGACTGTGGAGGAGGAGGAGACCGACACT
CACACCATAATTCCTCCTCATATTAAGCATGCTATTTTCCAATCAAGGAC
TACAGCAACAACTCCAACAGCAACAACTTCAACAGCAACAACCACAGCAG
CAACCACAACAACAACAGCAACCGCCACAACAACCGCCACAAATGGTTGA
ATTATCTCCAGGCACTGGAGTGATGGTCATGCATGAAACCCTTTGTGTTG
CTCTGTTGAAGCTTCTTGCAAATGATTGCCTTCCTTATTTGATTAGAAGG
CCATTATCAAAGCAAATGAGGAAAATGAAAACCTGAAGGAGCAAGTTCGC
ATCTTGAATCAGAGTAATTTTGTCTTGTTAATTGTCAAGACAAGTTGGAA
CGTACAAAGAAGGGAGTCCAACCTCAATTGGTAAAATGTACACTGCCAAG
ATTAAAGGTCTTTTGCACCAGGACCTTTCAAATGGCAAGGACCTATCTGA
AAAAAAGCAAAAGTCTGCCAACCAGGCATGAGTCCGGGAGATATTAGATT
CTTTACCCATCAAACACAGACACGTCTGACTGTGGAGGAGGAGGAGACCG
ACACTCACACCATAATTCCTCCTCATATTAAGCATGCTATTTTCCAATCA
AGGACTACAGCAACAACTCCAACAGCAACAACTTCAACAGCAACAACCAC
AGCAGCAACCACAACAACAACAGCAACCGCCACAACAACCGCCACAAATG
GTTGAATTATCTCCAGGCACTGGAGTGATGGTCATGCATGAAACCCTTTG
TGTTGCTCTGTTGAAGCTTCTTGCAAATGATTGCCTTCCTTATTTGATTA
GAAGGCCATTATCAAAGCAAATGAGGAAAATGAAAACCTGAAGGAGCAAG
TTCGCATCTTGAATCAGAGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039711XLOC_039711Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063375-exon-scaffold_387-1575043694:16551..16618TCONS_00063375-exon-scaffold_387-1575043694:16551..16618Clytia hemisphaericaexon
TCONS_00063375-exon-scaffold_387-1575043694:16222..16430TCONS_00063375-exon-scaffold_387-1575043694:16222..16430Clytia hemisphaericaexon
TCONS_00063375-exon-scaffold_387-1575043694:15887..15984TCONS_00063375-exon-scaffold_387-1575043694:15887..15984Clytia hemisphaericaexon
TCONS_00063375-exon-scaffold_387-1575043694:15128..15601TCONS_00063375-exon-scaffold_387-1575043694:15128..15601Clytia hemisphaericaexon
TCONS_00063375-exon-scaffold_387-1510915933:16551..16618TCONS_00063375-exon-scaffold_387-1510915933:16551..16618Clytia hemisphaericaexon
TCONS_00063375-exon-scaffold_387-1510915933:16222..16430TCONS_00063375-exon-scaffold_387-1510915933:16222..16430Clytia hemisphaericaexon
TCONS_00063375-exon-scaffold_387-1510915933:15887..15984TCONS_00063375-exon-scaffold_387-1510915933:15887..15984Clytia hemisphaericaexon
TCONS_00063375-exon-scaffold_387-1510915933:15128..15601TCONS_00063375-exon-scaffold_387-1510915933:15128..15601Clytia hemisphaericaexon
TCONS_00063375-exon-scaffold_387-1491911889:16551..16618TCONS_00063375-exon-scaffold_387-1491911889:16551..16618Clytia hemisphaericaexon
TCONS_00063375-exon-scaffold_387-1491911889:16222..16430TCONS_00063375-exon-scaffold_387-1491911889:16222..16430Clytia hemisphaericaexon
TCONS_00063375-exon-scaffold_387-1491911889:15887..15984TCONS_00063375-exon-scaffold_387-1491911889:15887..15984Clytia hemisphaericaexon
TCONS_00063375-exon-scaffold_387-1491911889:15128..15601TCONS_00063375-exon-scaffold_387-1491911889:15128..15601Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063375-proteinTCONS_00063375-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_387supercontigscaffold_387:15128..16618 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.813525	0.869547	1.49264	1.30892	1.42036	0.888727	1.35637	1.00085	0.70501	0.543522	0.505941	1.10405	0.443283	0.268506	0.524233	0.595644	0.541091	0.384278	0.177197	0.30861	0.590747	0.778811	25.7059	24.3833	0.476136	0.430154	506.392	409.078	3.62701	2.13867
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR015943WD40/YVTN_repeat-like_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00063375 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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