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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00063366 ID=TCONS_00063366|Name=TCONS_00063366|organism=Clytia hemisphaerica|type=transcript|length=2105bpRun BLAST on NCBI protein sequence of TCONS_00063366-protein >TCONS_00063366-protein ID=TCONS_00063366-protein|Name=TCONS_00063366-protein|organism=Clytia hemisphaerica|type=polypeptide|length=578bp MYDSLPSSFGKRYDRDDRRGGGGRGGYGGGYGGGRGGGRGGGGGGKFKDNRun BLAST on NCBI transcript from alignment at scaffold_386:194418..201111- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00063366 ID=TCONS_00063366|Name=TCONS_00063366|organism=Clytia hemisphaerica|type=transcript|length=6694bp|location=Sequence derived from alignment at scaffold_386:194418..201111- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_386:194418..201111- >TCONS_00063366 ID=TCONS_00063366|Name=TCONS_00063366|organism=Clytia hemisphaerica|type=CDS|length=19107bp|location=Sequence derived from alignment at scaffold_386:194418..201111- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00063366 vs. Swiss-Prot (Human)
Match: DDX5 (Probable ATP-dependent RNA helicase DDX5 OS=Homo sapiens GN=DDX5 PE=1 SV=1) HSP 1 Score: 602.053 bits (1551), Expect = 0.000e+0 Identity = 299/439 (68.11%), Postives = 359/439 (81.78%), Query Frame = 2
Query: 470 GASLRKPRWNMDSLPRFDKNFYREHPNVQARSMEAVEEYRKARDITVAGRNCPKPCQSFEETNLPDYVAETIKRMNFNEPTPIQAQGFSVALSGRDSVGIAQTGSGKTISFMLPACVHIHHQEPLRSGDGPICLVLCPTRELAIQCQTVAGEFGKSSRIRSTCIYGGASKGPQIRDLERGSEIVVATPGRLIDLLEMRKLTLGRVTYMVLDEADRMLDMGFEPQIRKIFDQIRPDRQVLMWSATWPKEVRKLAEDFLKDYVQXXXXXXXXXXXXXXLQIVDVCQXXXXXXXXXXXXXXIMGEKENKTIIFCETKRKTDDITRRLRRDGWPAMCIHGDKSQPEREWVLKEFRSGKSPILLATDVASRGLDIPDINFVVNVDYPNNGEDYIHRIGRTARANRTGTAYTFFTQNNGKNAAELVSVMQEANQVVPPKLQDLAK 1786
G L K +WN+D LP+F+KNFY+EHP++ R+ + VE YR++++ITV G NCPKP +F E N P V + I R NF EPT IQAQG+ VALSG D VG+AQTGSGKT+S++LPA VHI+HQ L GDGPICLVL PTRELA Q Q VA E+ ++ R++STCIYGGA KGPQIRDLERG EI +ATPGRLID LE K L R TY+VLDEADRMLDMGFEPQIRKI DQIRPDRQ LMWSATWPKEVR+LAEDFLKDY+ INIG + + ANHNILQIVDVC + EK+ KL++L+EEIM EKENKTI+F ETKR+ D++TR++RRDGWPAM IHGDKSQ ER+WVL EF+ GK+PIL+ATDVASRGLD+ D+ FV+N DYPN+ EDYIHRIGRTAR+ +TGTAYTFFT NN K ++L+SV++EANQ + PKL L +
Sbjct: 38 GEKLVKKKWNLDELPKFEKNFYQEHPDLARRTAQEVETYRRSKEITVRGHNCPKPVLNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKLIRLMEEIMSEKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLISVLREANQAINPKLLQLVE 476 The following BLAST results are available for this feature:
BLAST of TCONS_00063366 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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