TCONS_00063321 (transcript) - C. hemisphaerica

Overview
NameTCONS_00063321
Unique NameTCONS_00063321
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length385

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00063321 ID=TCONS_00063321|Name=TCONS_00063321|organism=Clytia hemisphaerica|type=transcript|length=385bp
TTTTTGTGGACGATTTTTCCGATGAGATTGAAGATTATTCCTACCTAGAC
AACCTCGAAAAAGCTTCCAGGAGATACAGAAATACAATTTATCCAAAATA
CTGGAGTAAGAGGTTGAACAAATTACGCCAATATTTGGTTTGCGGTGTTA
TGGTATCGAACTATGTAAAACTTACACTTGGACCACTAAGAAATATATTT
GTTACCATTTACGACACGCTAGCAGAATTTAACGAAGAAgttaacaaagc
aaaatattgTAGACATTCGGTGTTGACAGCTAGCTATCGAAACTATGAAG
AAAACTGCCTCTATATTGCTATTTTTCATTATCGTGCGATAGAAGATGTA
TGGGTATTGGACTTGGAAGACGAAGAGATGAAAGA
Run BLAST on NCBI

protein sequence of TCONS_00063321-protein

>TCONS_00063321-protein ID=TCONS_00063321-protein|Name=TCONS_00063321-protein|organism=Clytia hemisphaerica|type=polypeptide|length=127bp
FVDDFSDEIEDYSYLDNLEKASRRYRNTIYPKYWSKRLNKLRQYLVCGVM
VSNYVKLTLGPLRNIFVTIYDTLAEFNEEVNKAKYCRHSVLTASYRNYEE
NCLYIAIFHYRAIEDVWVLDLEDEEMK
Run BLAST on NCBI

transcript from alignment at scaffold_385:55442..55826

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00063321 ID=TCONS_00063321|Name=TCONS_00063321|organism=Clytia hemisphaerica|type=transcript|length=385bp|location=Sequence derived from alignment at scaffold_385:55442..55826 (Clytia hemisphaerica)
TCTTTCATCTCTTCGTCTTCCAAGTCCAATACCCATACATCTTCTATCGC
ACGATAATGAAAAATAGCAATATAGAGGCAGTTTTCTTCATAGTTTCGAT
AGCTAGCTGTCAACACCGAATGTCTAcaatattttgctttgttaacTTCT
TCGTTAAATTCTGCTAGCGTGTCGTAAATGGTAACAAATATATTTCTTAG
TGGTCCAAGTGTAAGTTTTACATAGTTCGATACCATAACACCGCAAACCA
AATATTGGCGTAATTTGTTCAACCTCTTACTCCAGTATTTTGGATAAATT
GTATTTCTGTATCTCCTGGAAGCTTTTTCGAGGTTGTCTAGGTAGGAATA
ATCTTCAATCTCATCGGAAAAATCGTCCACAAAAA

Coding sequence (CDS) from alignment at scaffold_385:55442..55826

>TCONS_00063321 ID=TCONS_00063321|Name=TCONS_00063321|organism=Clytia hemisphaerica|type=CDS|length=381bp|location=Sequence derived from alignment at scaffold_385:55442..55826 (Clytia hemisphaerica)
TTTCATCTCTTCGTCTTCCAAGTCCAATACCCATACATCTTCTATCGCAC
GATAATGAAAAATAGCAATATAGAGGCAGTTTTCTTCATAGTTTCGATAG
CTAGCTGTCAACACCGAATGTCTAcaatattttgctttgttaacTTCTTC
GTTAAATTCTGCTAGCGTGTCGTAAATGGTAACAAATATATTTCTTAGTG
GTCCAAGTGTAAGTTTTACATAGTTCGATACCATAACACCGCAAACCAAA
TATTGGCGTAATTTGTTCAACCTCTTACTCCAGTATTTTGGATAAATTGT
ATTTCTGTATCTCCTGGAAGCTTTTTCGAGGTTGTCTAGGTAGGAATAAT
CTTCAATCTCATCGGAAAAATCGTCCACAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039671XLOC_039671Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063321-proteinTCONS_00063321-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063321-exon-scaffold_385-1491911889:55442..55826TCONS_00063321-exon-scaffold_385-1491911889:55442..55826Clytia hemisphaericaexon
TCONS_00063321-exon-scaffold_385-1510915933:55442..55826TCONS_00063321-exon-scaffold_385-1510915933:55442..55826Clytia hemisphaericaexon
TCONS_00063321-exon-scaffold_385-1575043694:55442..55826TCONS_00063321-exon-scaffold_385-1575043694:55442..55826Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_385supercontigscaffold_385:55442..55826 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.201578	0	0	0.893177	0	0.214811	0	0.485246	0.169866	0.420813	0	0.537	0	0	0.228925	0.122836	0	0.930613	0.214282	0.448461	0.584691	0.855576	0.231125	0.63038	0	0.386309	0.276404	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00063321 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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