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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00063291 ID=TCONS_00063291|Name=TCONS_00063291|organism=Clytia hemisphaerica|type=transcript|length=379bp
ataggTTTTTATGCTGGTATAATTGCATCATCATTGTTTGTTGGTCGATT
TTTTGGAGGATACTTTTGGGGTTGGCTGACAGACAAGATTGGTCGACGTC
CAGTCCTTCTCCTCTCCTCGACTCTGGTGTTATTGGCAACCCTTGCGTTT
GGATTCTCGACCACCTTTGAAGTTGCAGTGCTGACCAGGTTTCTTCAAGG
ATTATTCAATGGTGTCATAGTATGTGGGCGAGCAGCGTTCGCAGAAATAT
GTGACGAAACAAACCAAGCTATTGGAGTATCTTTGGTATTTGCAGCATGG
AATTCAGCAATCGTTTTTGGCCCTGCAGTTGGAGgatttttagcCGAGCC
AGTAAAGAAATACCCATCAACCTTCAAAG Run BLAST on NCBI protein sequence of TCONS_00063291-protein >TCONS_00063291-protein ID=TCONS_00063291-protein|Name=TCONS_00063291-protein|organism=Clytia hemisphaerica|type=polypeptide|length=126bp
IGFYAGIIASSLFVGRFFGGYFWGWLTDKIGRRPVLLLSSTLVLLATLAF
GFSTTFEVAVLTRFLQGLFNGVIVCGRAAFAEICDETNQAIGVSLVFAAW
NSAIVFGPAVGGFLAEPVKKYPSTFK Run BLAST on NCBI transcript from alignment at scaffold_385:445943..447487- Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00063291 ID=TCONS_00063291|Name=TCONS_00063291|organism=Clytia hemisphaerica|type=transcript|length=1545bp|location=Sequence derived from alignment at scaffold_385:445943..447487- (Clytia hemisphaerica)
ATAGGTTTTTATGCTGGTATAATTGCATCATCATTGTTTGTTGGTCGATT
TTTTGGAGGGTAAGATTTATAGTTTTTTTTGGATCGAGGCTGCATGTAAT
TTGTGTGTTTTTTTTTAAGATGTCTGCGATTCAGAACAAGAGAACTCAAA
TAATGGATGGACTGTAAAAATATTTTTGATCGAAAGTAGTAAGAAAGTTC
CTTTCAAATCCACCAAAATAAGTCAACATTTGAAATGTTTGTCGCTGAAT
TTTATTTTCTTCGAATTATAGCTTCTTGTCAAAATAAGTTCTCTCTAAAA
CTAAAAAAGTCTATCGTACATATCCGTTAATGTGTTTTTAGCCGTTTGAT
ATTCTTTACGGCATTCAGCGACATGTCATTGTTGGTCAATCCCGTTCATT
GTCTTTTCTCTCCGGTACCTTGTTGTTTTTATCGTTATTCGAAATTTCAG
ATACTTTTGGGGTTGGCTGACAGACAAGATTGGTCGACGTCCAGTCCTTC
TCCTCTCCTCGACTCTGGTGTTATTGGCAACCCTTGCGTTTGGATTCTCG
ACCACCTTTGAAGTTGCAGTGCTGACCAGGTTTCTTCAAGGATTATTCAA
TGGTAATGCAATCATCGTTAATTTCATGATCACAGACCCATTGGGTTGAG
TCTCACTGGAAGATTTGGCCATTCATCTCCAGTTGAAAAATTACCTTACA
ATTTCCGTGATAAAACTCATTGAAGGGATGTAAAAGGAAGAAGTAAAAGG
TGTTGGTGTTTTAGTGAAAAAGGAATCACCCCAACCTATCCAAAAAGAGA
ATTTCGAATAAGTTCTTATTGCCTAAAATAAGCGTTTCGCAAAAAATTGT
TAGTTAATTTGGAAAATCAAAAACAAACTAAAATTCAATAAACTACAATA
TTTGAAAAAAAGCAAAAACCACAGCCTTGAATCTTTAGTTTTCTAATAAA
ATAAAATATAATATCTTTCTAGGTGTCATAGTATGTGGGCGAGCAGCGTT
CGCAGAAATATGTGACGAAACAAACCAAGCTATTGGAGTATCTTTGGTAT
TTGCAGCATGGAATTCAGCAATCGTTTTTGGCCCTGCAGTTGGAGGCACG
TTATGTTCTTGTTCTAGGAATATCCTGGGGGGGGGGCACTAGTGTTGGCG
GATGAGGGGTATGTACGGATGGGACCTCCAAAGGCAAAGACCGACCTTTA
GAGAGACTTTTTTGAAAAATGTTCTTCGATTTTTGAAAAACTCCTTACTC
TTAGAGAGACTTTTTCAAAATATTTTTCTAAAAACTTTTGATTTTTACGA
GCCTTAGAGAGTATTTTGAAGGGTGAAAAACCGACTCTTACCGTCATACC
TAGCACCCATTTTTGCTTAAGTACCCCCCCCCGAGGAACATTTAGGTGAT
TAACATGTGTTTTATTTTGGTTCGGTGAACCACTACTTTCGTCAACTAAA
TATGACACAAAAATCAAAATTCATACTCTCACCATTCTCATACTTTTCAG
GATTTTTAGCCGAGCCAGTAAAGAAATACCCATCAACCTTCAAAG Coding sequence (CDS) from alignment at scaffold_385:445943..447487- >TCONS_00063291 ID=TCONS_00063291|Name=TCONS_00063291|organism=Clytia hemisphaerica|type=CDS|length=1512bp|location=Sequence derived from alignment at scaffold_385:445943..447487- (Clytia hemisphaerica)
GATTTTTAGCCGAGCCAGTAAAGAAATACCCATCAACCTTCAAAGTGTCA
TAGTATGTGGGCGAGCAGCGTTCGCAGAAATATGTGACGAAACAAACCAA
GCTATTGGAGTATCTTTGGTATTTGCAGCATGGAATTCAGCAATCGTTTT
TGGCCCTGCAGTTGGAGATACTTTTGGGGTTGGCTGACAGACAAGATTGG
TCGACGTCCAGTCCTTCTCCTCTCCTCGACTCTGGTGTTATTGGCAACCC
TTGCGTTTGGATTCTCGACCACCTTTGAAGTTGCAGTGCTGACCAGGTTT
CTTCAAGGATTATTCAATGATAGGTTTTTATGCTGGTATAATTGCATCAT
CATTGTTTGTTGGTCGATTTTTTGGAGGGATTTTTAGCCGAGCCAGTAAA
GAAATACCCATCAACCTTCAAAGTGTCATAGTATGTGGGCGAGCAGCGTT
CGCAGAAATATGTGACGAAACAAACCAAGCTATTGGAGTATCTTTGGTAT
TTGCAGCATGGAATTCAGCAATCGTTTTTGGCCCTGCAGTTGGAGATACT
TTTGGGGTTGGCTGACAGACAAGATTGGTCGACGTCCAGTCCTTCTCCTC
TCCTCGACTCTGGTGTTATTGGCAACCCTTGCGTTTGGATTCTCGACCAC
CTTTGAAGTTGCAGTGCTGACCAGGTTTCTTCAAGGATTATTCAATGATA
GGTTTTTATGCTGGTATAATTGCATCATCATTGTTTGTTGGTCGATTTTT
TGGAGGGATTTTTAGCCGAGCCAGTAAAGAAATACCCATCAACCTTCAAA
GTGTCATAGTATGTGGGCGAGCAGCGTTCGCAGAAATATGTGACGAAACA
AACCAAGCTATTGGAGTATCTTTGGTATTTGCAGCATGGAATTCAGCAAT
CGTTTTTGGCCCTGCAGTTGGAGATACTTTTGGGGTTGGCTGACAGACAA
GATTGGTCGACGTCCAGTCCTTCTCCTCTCCTCGACTCTGGTGTTATTGG
CAACCCTTGCGTTTGGATTCTCGACCACCTTTGAAGTTGCAGTGCTGACC
AGGTTTCTTCAAGGATTATTCAATGATAGGTTTTTATGCTGGTATAATTG
CATCATCATTGTTTGTTGGTCGATTTTTTGGAGGGATTTTTAGCCGAGCC
AGTAAAGAAATACCCATCAACCTTCAAAGTGTCATAGTATGTGGGCGAGC
AGCGTTCGCAGAAATATGTGACGAAACAAACCAAGCTATTGGAGTATCTT
TGGTATTTGCAGCATGGAATTCAGCAATCGTTTTTGGCCCTGCAGTTGGA
GATACTTTTGGGGTTGGCTGACAGACAAGATTGGTCGACGTCCAGTCCTT
CTCCTCTCCTCGACTCTGGTGTTATTGGCAACCCTTGCGTTTGGATTCTC
GACCACCTTTGAAGTTGCAGTGCTGACCAGGTTTCTTCAAGGATTATTCA
ATGATAGGTTTTTATGCTGGTATAATTGCATCATCATTGTTTGTTGGTCG
ATTTTTTGGAGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00063291-exon-scaffold_385-1575043694:447429..447487 | TCONS_00063291-exon-scaffold_385-1575043694:447429..447487 | Clytia hemisphaerica | exon |
| TCONS_00063291-exon-scaffold_385-1575043694:446886..447037 | TCONS_00063291-exon-scaffold_385-1575043694:446886..447037 | Clytia hemisphaerica | exon |
| TCONS_00063291-exon-scaffold_385-1575043694:446393..446515 | TCONS_00063291-exon-scaffold_385-1575043694:446393..446515 | Clytia hemisphaerica | exon |
| TCONS_00063291-exon-scaffold_385-1575043694:445943..445987 | TCONS_00063291-exon-scaffold_385-1575043694:445943..445987 | Clytia hemisphaerica | exon |
| TCONS_00063291-exon-scaffold_385-1510915933:447429..447487 | TCONS_00063291-exon-scaffold_385-1510915933:447429..447487 | Clytia hemisphaerica | exon |
| TCONS_00063291-exon-scaffold_385-1510915933:446886..447037 | TCONS_00063291-exon-scaffold_385-1510915933:446886..447037 | Clytia hemisphaerica | exon |
| TCONS_00063291-exon-scaffold_385-1510915933:446393..446515 | TCONS_00063291-exon-scaffold_385-1510915933:446393..446515 | Clytia hemisphaerica | exon |
| TCONS_00063291-exon-scaffold_385-1510915933:445943..445987 | TCONS_00063291-exon-scaffold_385-1510915933:445943..445987 | Clytia hemisphaerica | exon |
| TCONS_00063291-exon-scaffold_385-1491911889:447429..447487 | TCONS_00063291-exon-scaffold_385-1491911889:447429..447487 | Clytia hemisphaerica | exon |
| TCONS_00063291-exon-scaffold_385-1491911889:446886..447037 | TCONS_00063291-exon-scaffold_385-1491911889:446886..447037 | Clytia hemisphaerica | exon |
| TCONS_00063291-exon-scaffold_385-1491911889:446393..446515 | TCONS_00063291-exon-scaffold_385-1491911889:446393..446515 | Clytia hemisphaerica | exon |
| TCONS_00063291-exon-scaffold_385-1491911889:445943..445987 | TCONS_00063291-exon-scaffold_385-1491911889:445943..445987 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_385 | supercontig | scaffold_385:445943..447487 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0055085 | transmembrane transport |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0055085 |
transmembrane transport |
| cellular_component |
GO:0016021 |
integral component of membrane |
Blast
The following BLAST results are available for this feature:
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