TCONS_00063265 (transcript) - C. hemisphaerica

Overview
NameTCONS_00063265
Unique NameTCONS_00063265
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length595

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00063265 ID=TCONS_00063265|Name=TCONS_00063265|organism=Clytia hemisphaerica|type=transcript|length=595bp
ATGATTAATGAAACCACATTTAGGGGTGAAtaactttttcttcaaaataa
atcgTTCTAATTCttcctATAAAAATAATTGCTACactaaaattgaaagt
ttttcacctTGAAAATATATGCCCAAGTTGTGTGcaataaaatcacaaaa
atgttttaattgatGATATCTTAACACGTTTACTACAACAGTTAGATGGA
AATTCATTCCAGTTGTAGTCCCAAGTTAGCATTAGTTCTTTTTCAACTTT
ACACAATTTTCCATTATTAGTCAATTGGTTATGTTTAGCATACATATCTT
CAGGTTGCTGTTTATGTGATACTATATGAAGGTTACTACATCCCATACTT
TTGTACCAGGTATCAAAACGCACATCGTGGAAACGGTTCAGTTTGATGGA
TGCAAGCCATACACCTATAAATAATAAACAGATTAATTCAAGCTAAACAT
CTACTAATCTTTAATCATACTAATTCACTCGATTTGATTTTGCagtttca
atcattttttactATTTTCGCAAAAATCAATCTTGCAAAATGGGGAGAAA
TTGCTATCTTGGCAGATCTTGGGAGATTTGCAGAACcagattttt
Run BLAST on NCBI

transcript from alignment at scaffold_385:587394..588052+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00063265 ID=TCONS_00063265|Name=TCONS_00063265|organism=Clytia hemisphaerica|type=transcript|length=659bp|location=Sequence derived from alignment at scaffold_385:587394..588052+ (Clytia hemisphaerica)
ATGATTAATGAAACCACATTTAGGGGTGAAtaactttttcttcaaaataa
atcgTTCTAATTCttcctataaaaataattgctACTNACTGGCTTGTTGT
GTAATGTATAttcatttttagctttttttgacATAAAAATAATTGCTACa
ctaaaattgaaagtttttcacctTGAAAATATATGCCCAAGTTGTGTGca
ataaaatcacaaaaatgttttaattgatGATATCTTAACACGTTTACTAC
AACAGTTAGATGGAAATTCATTCCAGTTGTAGTCCCAAGTTAGCATTAGT
TCTTTTTCAACTTTACACAATTTTCCATTATTAGTCAATTGGTTATGTTT
AGCATACATATCTTCAGGTTGCTGTTTATGTGATACTATATGAAGGTTAC
TACATCCCATACTTTTGTACCAGGTATCAAAACGCACATCGTGGAAACGG
TTCAGTTTGATGGATGCAAGCCATACACCTATAAATAATAAACAGATTAA
TTCAAGCTAAACATCTACTAATCTTTAATCATACTAATTCACTCGATTTG
ATTTTGCagtttcaatcattttttactATTTTCGCAAAAATCAATCTTGC
AAAATGGGGAGAAATTGCTATCTTGGCAGATCTTGGGAGATTTGCAGAAC
cagattttt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039648XLOC_039648Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063265-exon-scaffold_385-1491911889:587394..587461TCONS_00063265-exon-scaffold_385-1491911889:587394..587461Clytia hemisphaericaexon
TCONS_00063265-exon-scaffold_385-1510915933:587394..587461TCONS_00063265-exon-scaffold_385-1510915933:587394..587461Clytia hemisphaericaexon
TCONS_00063265-exon-scaffold_385-1575043694:587394..587461TCONS_00063265-exon-scaffold_385-1575043694:587394..587461Clytia hemisphaericaexon
TCONS_00063265-exon-scaffold_385-1491911889:587526..588052TCONS_00063265-exon-scaffold_385-1491911889:587526..588052Clytia hemisphaericaexon
TCONS_00063265-exon-scaffold_385-1510915933:587526..588052TCONS_00063265-exon-scaffold_385-1510915933:587526..588052Clytia hemisphaericaexon
TCONS_00063265-exon-scaffold_385-1575043694:587526..588052TCONS_00063265-exon-scaffold_385-1575043694:587526..588052Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_385supercontigscaffold_385:587394..588052 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.656076	1.17895	0	0	0	0	0	0	0	0	0	0.521825	0	0	0.653039	0.778918	0	0	0	0	1.61387	0	0	0	0	0	0	0	0
Blast
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BLAST of TCONS_00063265 vs. Swiss-Prot (Human)
Match: B3GT6 (Beta-1,3-galactosyltransferase 6 OS=Homo sapiens GN=B3GALT6 PE=1 SV=2)

HSP 1 Score: 97.8265 bits (242), Expect = 3.551e-24
Identity = 42/84 (50.00%), Postives = 56/84 (66.67%), Query Frame = -1 
Query:  167 IGVWLASIKLNRFHDVRFDTWYKSMGCSNLHIVSHKQQPEDMYAKHNQLTNNGKLCKVEKELMLTWDYNWNEFPSNCCSKRVKI 418
            +G WLA + + R HD RFDT Y+S GCSN ++V+HKQ  EDM  KH  L   G+LCK E +L L++ Y+W+  PS CC +R  I
Sbjct:  245 LGAWLAPVDVQREHDPRFDTEYRSRGCSNQYLVTHKQSLEDMLEKHATLAREGRLCKREVQLRLSYVYDWSAPPSQCCQRREGI 328
The following BLAST results are available for this feature:
BLAST of TCONS_00063265 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
B3GT63.551e-2450.00Beta-1,3-galactosyltransferase 6 OS=Homo sapiens G... [more]
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