TCONS_00063249 (transcript) - C. hemisphaerica

Overview
NameTCONS_00063249
Unique NameTCONS_00063249
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1496

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00063249 ID=TCONS_00063249|Name=TCONS_00063249|organism=Clytia hemisphaerica|type=transcript|length=1496bp
atttgaccaaTGTATTCGGTATATTAGTTTTGTTTCTTTAGAAACAGTCA
TGTAATGTTAAAATAAAGTATTTCTATGGTCTCAGCACTTGTTTTGGATA
TCACTTATTTTCATCGTCATTCGAAAGCTACGCGAGAAGAGGATCACCAG
TATCTAAAATGTCCTCGATAACTTTCTTTATCACTTATATTATCTCATCA
CTGGTTTTGCTCAATAATAAAGCAAACCTGGTGGATGCCGAATGTACAGG
TCGCTTGGGACTCTCCAGAGTAAGTGAAGAGAAATTCGATGTTGTGGTTG
GTGACGTAATAAAACTCAAAGCACAATCAACACAAGGCGGATTTAGGTAT
CATTGGTCTGTGAATGGGCAGACGTTAACATATGGATTAATGCGATTCTC
ACCTCATTATGTGAATAGTAATACAGCAAGAGGATCTGCATTGGAAATTC
GGGACATTCAACGGAGACATGGTGGAATATACAAACTTAAATTTGTAGAC
TATTCAAACAATTGCCAAATCATTGATTTCAAAGTTACAGTGTCaggtaa
aaaaaagaatttctttctATTTTCAAACGAACATTAGGATTCCTTTACGT
TCCTTTAATTAAACACTGTTCTCTCGCTACTCAACGCCTATAATCTTGAG
CTAACGAAAATCTCAGAATGAGCTTCAAAAGAATCatgataaaatcaatt
ttgcatCAAACGTTCTAACTAACACTCGAGGGCTCAAATCAGGCGAATGT
TTTTCGGattataaaaagattcgaataatagaaattcaaataaaatcGAG
Agtctatagaccttttcataaattacgacacgaacatcacttgcctcgtt
ttcgaACAATTactatggtgattatgtcccttgagacattaaatggtttt
tttatgaaaaaaatgtagTTTCAATAAAATCCTGCTGGGAGTTGATCACC
atgacaatattttcaaaaaaaggcaagtgatgttcgtgacgtaatttatg
aaaaggtataTTTTAGCATCTAAAATCTTAACAGTAAAATAAACTCTATT
TGATGCTCTATCTAAAACAAGAACCAACgacaaccacaacaacaacaaca
acaacaacaacaacaacaacaacaactatACCTACTACAGAAAGAAGATA
TGAAAACGAGTTTACCCCGAAGCCCAATATCGAACCAGTGGTTGGTTTAA
AAAAGGAAGAATCGGACCCGGTTACCGCATTTATTACATTGATAGTCGGC
TGTTTCTTAGCTAGTACATTGATATCATCGGCTGTTCTTGTGATTGCTTA
TAAAAGAGCACTAGCTCGCCGCACGATGCAgAGATTATCGACATCTTCAA
TACAAAAGGATTCTTACAAggatgatgacgatgatgaaaGTGACGTAGAA
AGTCGCAAAACAGGATCTGACAAAGTGCGAAGacataagaaaagaaaaga
ggATAGACGATACTCCGATGATGAATGAcgagttgaaataaaaaat
Run BLAST on NCBI

transcript from alignment at scaffold_385:5874..15486+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00063249 ID=TCONS_00063249|Name=TCONS_00063249|organism=Clytia hemisphaerica|type=transcript|length=9613bp|location=Sequence derived from alignment at scaffold_385:5874..15486+ (Clytia hemisphaerica)
atttgaccaaTGTATTCGGTATATTAGTTTTGTTTCTTTAGAAACAGTCA
TGTAATGTTAAAATAAAGTATTTCTATGGTCTCAGCACTTGTTTTGGATA
TCACTTATTTTCATCGTCATTCGAAAGCTACGCGAGAAGAGGATCACCAG
TATCTAAAATGTCCTCGATAACTTTCTTTATCACTTATATTATCTCATCA
CTGGTTTTGCTCAATAATAAAGgtaattaaaaataattaaaaattttttt
ggcatgACATTTTGGCTTATTAGATTAATACTCTCAGTATTCTGTCAGGG
CGGCTCGCAAATTTCACTTCataccaaatgcaagcaaccttggtttacaa
acccaatgcctaaccgcttgCTCTAACGAAACACGACAGAAAAcagtcat
tcacaaatacttatagcgtataatttacagacctttattaagaaaactcc
caaccctaccggtgcccctacaaaatatatttttagttcgataaaagaaa
caccatctaccgcaaaaaaaaattcaaaatgtttttttcttgccGAAAag
aagctcttcaaagttgaaatactcttctttgcaaaagtcttctttttctt
cctcatcgaattttttcattgtaattcttaaattttcagactcaaggata
gttggcctaacagtcacagttttgtgtgctacatcaaatagaaatttata
ttttttacgtgacaaatatttcaagttcactatggtcagagcccttaaga
aatTGTTTTCTAATCATCCGCTAAAATAAGCTCCCGTGAAATAATTGAAC
AGACGTCAACCacgtagcgagcacctcactaaaaaccgggatttttcatc
tcgtttcttagtgaattccactttgacgattttcgaaaaatagaagtctt
tcaagtgttttgacgcaaattcgattattttgctactgcagaagctttga
aagttaaaagtgacgtaagaaaatcttagaaaaattttagagcccgaaaa
cctgggctcaaaacattcgaaaaagtcgcaaagtggaatagacgttaatt
gcgtaaaaaacgcgggtgacgtctagtataggctatcaACCACGATGATA
AGTCCCCACGAAATCTAAGAATTTCATAGAAACGCCCAAAAACGAAATTT
Aatgccccccagcggtttgcgtgaatgcgtgaatgggctttttcacttcc
gtgaatgcgtgaaaattaaagaaaaactgCGTGAATGCGAGAATTGGAAG
TAATTGACCTTTTTTGTACCAATAGCTTTCTCATTTGGAAATCTTAATTA
ATAATTCTTTCAAAGAGGCTCAGCGCCATAgatttgtaaagcccgaagaa
ctagatggagtgctttaagccattccaagcaaaaaagtgatatcgcaaaa
aatattgctgcttttgttttcgaaaacccgcgaagcttctgattgatcaa
gcactgaaattctatattgtaatgtcatgtgacttaggtaggatttacTA
CCTAACCTCTCTACCTACCTACCGTACGCAAAAGCACGGTATCTAGCCAT
TTGGGCTTTACAAATCTATGCTCAGCGCCCCAAATTTAATTGAATTCAAC
TGTCTTTCTATTCGTAGCAAACCTGGTGGATGCCGAATGTACAGGTCGCT
GTaagttgaaatattcttttcagTTCTTTCACATTTATCTTATGCTCACT
GTTACGAACTTGATTGTGCTGTTATAGCAAATTAATGCGTAGTTGATCGA
CTGGAGAATTGAGAATGTTCTTTCGTATTTcctttttgtataatttttat
gCCTTCTAGGGAACTTCGTGTTTTAGATAAAAAGCAATGTAATAAACCAC
AAAGCAAACTTCTAACACAAGAAAATAGGGTCAAAATGACTGTATAGATG
CCCGTTGAATTTGACACCGTGAATTTTGAAGTTCTTGACTCTTTCGATGT
CTTGACCGGCACTTTTTATTTCGGTGACCAAGTAAGCAAGCGAGTGGCGT
TGTGCTAGCTGTCTGGTTGAAAATACAGTCATTTCGGTCCGACCACTAGT
TAATGTTATCGATTTCTATATACACGGATTCGATGGTATTCTGTAACTCT
TTGATTTTTGCGTGANATTTCTATATGTACGGATTCGATGGTATTCTGTA
ACTCTTTGATTTTTGCGTGACGTAGTAGTTTTGTATCATCAGCGAAGAAT
TTTCTcagattttctactttttccccaaattttacaataaaaCACCCTAC
AAGGGACtgacttttctattttggtatttttgctACCCTACCTGGGACTA
GTGGGGGTTAAAAATGGTATACTGACTAGTAGCgtatccccgtaacccat
tttgccctagtaccccctggactattcttataaaagaaagtgtaGCGTAT
ATTGGTATCCTTATAAAAACGACtattatatattaatattataGTGGGAC
TCTCCAGAGTAAGTGAAGAGAAATTCGATGTTGTGGTTGGTGACGTAATA
AAACTCAAAGCACAATCAACACAAGGCGGATTTAGGTATCATTGGTCTGT
GAATGGGCAGACGTTAACATATGGATTAATGCGATTCTCACCTCATTATG
TGAATAGTAATACAGCAAGAGGATCTGGTAAGTAATATATTACTAAACTT
GCCGCGTAGTCCGAGGCAACTCTAGTGGAATTACGTAGATggtgggggta
cttaggcaagtgtACGGGTATGTGCCAACCATAAGGATGTCTTTTTGGAN
GATTTTTTCTCGTTTCGTTCGCTTTAAATATGCGGTCCAGCATAATAAGG
AGTGAAATTAAAGACACTACGCATGAGATTCTTCCAAGAATGGGGGTGAT
GACACGTAGATggtgggggtacttaggcaagtgtacgggtatgtgccgac
CATAAGGATGTCTTTTTGGAACCCTGAAGTCCCTGTAaaggttggaaaaa
tcagaaaatcaatcTTCAGTCCCTGTAAATATTGGAAAAATagccccccg
gacaagcattcAAAATTACCAAACAAACCAAAATTACTCCTAAACAGAGC
AAGTTTACCCCCCGGACAAGGCAAATTTTTGTCCCCACAGCGAGTATGGC
GCATAGATATTGGACTGGAATCTCGAAATTTTGTTGTTTTGTCGCGCAAG
CATCCCCGAAGTTAGTCTCTTCCGTAAATCTAAATGTTCGGTTTTTTTCC
GGGACGGTAATATACATTTTTTCATATTACGTTATATGCTATTACCATTA
TTACATATTACTGATTTAGCTTTGAAAAGCTGAAGCGAGTGTTATGAATG
CAGATTATAACAGTGTATGATATAACACGAATACAATATTAGTTGTGCAA
ATCTAGACTAGAGACTACTTCTGGCTGAACTTTGCATTTTGATAATTTTT
GATGACACTGAGTCCAGTGAAGTAGACTAGGAGCATTTCGCGAGGTTGCC
ATTTTGAAAAAAAAATGTTTAGAATCCAAATAACAAAAAAGCTACTTGAA
GTTGAAAAATATAATTAAGAATGAGAAacaaacatcaataacagattttg
aatcccttattttaaaataaaaacattgcttcatactgtttttaccttcc
aaaaagaacgaaaaaaaagagcatattaccatatactaccgggccactta
attgCACCATTCAGTCTatgaaaaagcaaaacaaacaaaatggcagactg
gttatgattatacattttgataaataacgagattgctcacgggaatttct
aacccgcgcgagcaaacccacacctgtcaatcattttttaggcctgtcaa
tcattttttNcaaaacaaacaaaatggcagactggttatgattatacatt
ttgataaataacgagattgctcacgggaatttctaacccgcgcgagcaaa
cccacacctgtcaatcattttttaggcctgtcaatcattttttagcagcA
TATTCAGTCacttgtggttctgaaaaaGGTGTTTGTAAGATAGCAAAAAA
Gagacgaaagtcgattttcatgtatttttttagttgaaagttttggaata
ctagattttcaagagaagggaaagtcatGACTCTTGGCTCTCCACCCACT
AAccaacctgatccattttgaaatacagtaCTTGATGACAAACTCAAACT
GAATAGGTGACACTActtagaaagaaaatttttgtttcttaaaattctaa
ccggaattttcaaaaatatcaataagagctcataaaaccagaaaaaggtT
TGTCAtcaatgctgacaaaataacacaTACTACAACACACCATTTAGGAT
TCGAACTCTCAAAAATGTTTCCTTGTCAGATGGCAGATTAGCGCCTtatc
tagtctgaatcgcagacctctacaaaaccccatNTCATTATGTGAATAGT
AATACAGCAAGAGGATCTGGTAAGTAATATATTACTAAACTTGCCGCGTA
GTCCGAGGCAACTCTAGTGGAATTACGTAGATggtgggggtacttaggca
agtgtACGGGTATGTGCCAACCATAAGGATGTCTTTTTGGAACCCTGAAG
TCCTTGTAaaggttggaaaaatcagaaaatcaatcTTCAGTCCCTGTAAA
TATTGGAAAAATagccccccggacaagcattcaaaattaccaaacaaacc
aaaattactcctaaacagagcaagtttaccccccggacaaggcaaatttt
tgtccccacagCGAGTATggcgcatagatattggactggaatctcgaaat
tttgttgttttgtcgcgcaagcatccccgaagttagtctcttccgtaaat
ctaaatgttcggtttttttccgggacggtaaTATACattttttcatatta
cgttatatgctattaccattattacatattactgatttagctttgaaaag
ctgaagcgagtgttatgaATGCAGattataacagtgtatgatataacacg
aatacAATATTAGTTGTGCAAATCTAGACTAGAgactacttctggctgaa
ctttgcattttgataatttttgatgacgctgagtccagtgaagtagacta
ggagcatttcgcgaggttgccattttgaaaaaaaaatgtttagaatccaa
ataacaaaaaagctacttgaagttgaaaaatataattaagaatgagaaac
aaacatcaataacagattttgaatcCCTTATTTTAAANNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNACCAGTTAATTGTTTtaagattgatgacgtcat
ttctagatttttttcaggcacctatatctcgtgattggcttgtctgtttc
ctttcaaatttggcatgtgacgccttgacaataatgccttgaaattaatc
taattagattttgtcaattttggcgatgacgtcatgatttcggcgttact
tctcgttacttcttgttacttctcgttacctaCTCGTTACCCACTCGTTA
CTTCTTGTtgcttctcgttacttctcgttacttctcgttacttctcgtta
cttcttgttCCTTGTTATAGTAACAACCATAGTTACAGTCGTATGGcgtg
aataaatattttagcgtgattccagaaaaccccatttttaggaacttttt
ggctcaaatttttttatgattatCTGCTTAAACCAACTTTtaacctatga
tggtaccccaCTTTCATGcataaaaagagaaaatgatccaattaatgatc
caatttttcacaaagtccacaaaaaacctatttttagccatttggctgaa
atttactcattaaatttttttttcgaaattcggaCTCCGTAACATTTTGG
Ccgccaccattttgcacctttgtatcaaaaatcaaaagattcctatgatt
caatacTGAGAAAAGTtcgttggtaacagacgaaaggttgatttatagga
cctccaggtggTCCGAcaagttaagaaaatggacaaaatttattttataa
tttaatttattttaaggcttaaaactcaaaaagttaagaacatgccaaga
tttttcaaataaaaaacttgtAACGCATACcacaaaaaccttttttaatt
catttacATTTTAGCATTGGAAATTCGGGACATTCAACGGAGACATGGTG
GAATATACAAACTTAAATTTGTAGACTATTCAAACAATTGCCAAATCATT
GATTTCAAAGTTACAGTGTCaggtaaaaaaaagaatttctttctATTTTC
AAACGAACATTAGGATTCCTTTACGTTCCTTTAATTAAACACTGTTCTCT
CGCTACTCAACGCCTATAATCTTGAGCTAACGAAAATCTCAGAATGAGCT
TCAAAAGAATCatgataaaatcaattttgcatCAAACGTTCTAACTAACA
CTCGAGGGCTCAAATCAGGCGAATGTTTTTCGGattataaaaagattcga
ataatagaaattcaaataaaatcGAGAgtctatagaccttttcataaatt
acgacacgaacatcacttgcctcgttttcgaACAATTactatggtgatta
tgtcccttgagacattaaatggtttttttatgaaaaaaatgtagTTTCAA
TAAAATCCTGCTGGGAGTTGATCACCatgacaatattttcaaaaaaaggc
aagtgatgttcgtgacgtaatttatgaaaaggtataTTTTAGCATCTAAA
ATCTTAACAGTAAAATAAACTCTATTTGATGCTCTATCTAAAACAAGAAC
CAACgacaaccacaacaacaacaacaacaacaacaacaacaacaacaaca
actatACCTACTACAGAAAGAAGATATGAAAACGAGTTTACCCCGAAGCC
CAATATCGAACCAGTGGTTGGTTTAAAAAAGGAAGAATCGGACCCGGTTA
CCGCATTTATTACATTGATAGTCGGCTGTTTCTTAGCTAGTACATTGATA
TCATCGGCTGTTCTTGTGATTGCTTATAAAAGAGCACTAGCTCGCCGCAC
GATGCAGTAAGTGCTTTACTCTATCTTGTTATATCACCTCGTCAAAGGAA
TAAAACGAATGTTCCTTAAAGGTCGGGTACCCCAAATGGGGTACTTATTG
GGGTACCCATttaatttacagaccaaaatTAAATAACCAAAAATCGGCAA
CGGCATTtagtcaaattagtcccaataagggtcgtaaaattcacaaaatt
acCCTTTTCTGTTCCTTTTTGATCCGACTAAGGGTCTGAGAGTCGAAAGT
TGGGCAGTACCCTCCCCCCCCCGTCATCCTATAAATCTAGtactaaaaaa
aattggaaaaaatctcttgggaaatttattttcataccttaaagtgacgg
tggactaactaaaatcagtcttttaccccttggaaatttgaaaataattt
tttaccccctggaaaacaaaaaaatactcttttagaccccctggaattca
TGCTCAattaaccccctggaaatgttcgttcaccccctgtatggacataa
aatggaatggcccaattttAAGCATAATGGGGAGAAACATTTCTTTTTAT
AGCTGGTAATTTGATAGCTAGtaattaccttaagtggattagattttgcg
gggattaaatttggcgaatttggtgAATTAAAATCCGAccattcgcaaaa
ttaaatctccGCCAAGTTTAACAAAAAGAACATTATAGTATGTGAAAAAA
TCACAGCTTTGTAGTATATTTCATAGTAAATGTCACTCATTTCAGTGTCT
cgaaatttccaattcgccaaattttaaaatccccgccaaaaatcgtattt
tggccaatcactAAATTAAATCCtcaccaaaattaatccacttaaggtat
tttcaaagaattaatAAACTAGGGATTGGGGTCTTAACAAGGTCCGGGGG
TcggaagaaaaatgaaaaattaacaagcggcgTGAGTGCTTatattaggc
acctgagagcACACTGCAGacaattctttttaaaatttcatttccaggAG
ATTATCGACATCTTCAATACAAAAGGATTCTTACAAggatgatgacgatg
atgaaaGTGACGTAGAAAGTCGCAAAACAGGATCTGACAAAGTGCGAAGa
cataagaaaagaaaagaggATAGACGATACTCCGATGATGAATGAcgagt
tgaaataaaaaat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039634XLOC_039634Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063249-exon-scaffold_385-1491911889:5874..6095TCONS_00063249-exon-scaffold_385-1491911889:5874..6095Clytia hemisphaericaexon
TCONS_00063249-exon-scaffold_385-1510915933:5874..6095TCONS_00063249-exon-scaffold_385-1510915933:5874..6095Clytia hemisphaericaexon
TCONS_00063249-exon-scaffold_385-1575043694:5874..6095TCONS_00063249-exon-scaffold_385-1575043694:5874..6095Clytia hemisphaericaexon
TCONS_00063249-exon-scaffold_385-1491911889:7491..7523TCONS_00063249-exon-scaffold_385-1491911889:7491..7523Clytia hemisphaericaexon
TCONS_00063249-exon-scaffold_385-1510915933:7491..7523TCONS_00063249-exon-scaffold_385-1510915933:7491..7523Clytia hemisphaericaexon
TCONS_00063249-exon-scaffold_385-1575043694:7491..7523TCONS_00063249-exon-scaffold_385-1575043694:7491..7523Clytia hemisphaericaexon
TCONS_00063249-exon-scaffold_385-1491911889:8318..8472TCONS_00063249-exon-scaffold_385-1491911889:8318..8472Clytia hemisphaericaexon
TCONS_00063249-exon-scaffold_385-1510915933:8318..8472TCONS_00063249-exon-scaffold_385-1510915933:8318..8472Clytia hemisphaericaexon
TCONS_00063249-exon-scaffold_385-1575043694:8318..8472TCONS_00063249-exon-scaffold_385-1575043694:8318..8472Clytia hemisphaericaexon
TCONS_00063249-exon-scaffold_385-1491911889:10265..10292TCONS_00063249-exon-scaffold_385-1491911889:10265..10292Clytia hemisphaericaexon
TCONS_00063249-exon-scaffold_385-1510915933:10265..10292TCONS_00063249-exon-scaffold_385-1510915933:10265..10292Clytia hemisphaericaexon
TCONS_00063249-exon-scaffold_385-1575043694:10265..10292TCONS_00063249-exon-scaffold_385-1575043694:10265..10292Clytia hemisphaericaexon
TCONS_00063249-exon-scaffold_385-1491911889:13438..14329TCONS_00063249-exon-scaffold_385-1491911889:13438..14329Clytia hemisphaericaexon
TCONS_00063249-exon-scaffold_385-1510915933:13438..14329TCONS_00063249-exon-scaffold_385-1510915933:13438..14329Clytia hemisphaericaexon
TCONS_00063249-exon-scaffold_385-1575043694:13438..14329TCONS_00063249-exon-scaffold_385-1575043694:13438..14329Clytia hemisphaericaexon
TCONS_00063249-exon-scaffold_385-1491911889:15321..15486TCONS_00063249-exon-scaffold_385-1491911889:15321..15486Clytia hemisphaericaexon
TCONS_00063249-exon-scaffold_385-1510915933:15321..15486TCONS_00063249-exon-scaffold_385-1510915933:15321..15486Clytia hemisphaericaexon
TCONS_00063249-exon-scaffold_385-1575043694:15321..15486TCONS_00063249-exon-scaffold_385-1575043694:15321..15486Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_385supercontigscaffold_385:5874..15486 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.054192	0.0315919	0.122457	0	0	0.038431	0	0.0898483	0.134042	0.0345129	0	0.0625149	0.0199069	0.0717468	0.0208383	0.0255616	0.159553	0	0	0.107451	0.0392295	0.0390585	0.106508	0	0.065275	0.0770409	0.0720173	0.075613	0.0470537
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00063249 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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