TCONS_00063224 (transcript) - C. hemisphaerica

Overview
NameTCONS_00063224
Unique NameTCONS_00063224
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1042

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00063224 ID=TCONS_00063224|Name=TCONS_00063224|organism=Clytia hemisphaerica|type=transcript|length=1042bp
GAGAAATATTAACATCTTCCATACCTTTCCTATTAGGGCACGAATGTCTC
CAATGGCCAATCTGACCGCACTCGAAGCAACCATTGACGGGATGTATTGG
ATTCTGCAAAGATACGATTCTTGGAGAGGTTGCTTGCTGTGGAATAAAAA
ATCGTGGTCGTTGAAACGATGGAGGTACCTGATTGAAATTCTGTTGGAAT
GATGGCACccgattttgctgaaaaggCTGCAACTGAAGTTGTTGACGATA
TTGATGTGTACGAGTTGTATTTGACCTGGACTGCTGCTTCTTTTTCTGCA
ACGCTCTACTCTCGGCTTGACGGATACGTTTATCGTCAGCGCTATCAGAT
GCTAGTTCGTCCTGTACGTATTCATCTACAGTGGCCCAACCGCCCGGAGA
TTTGTCTGCAATACGGATTACTTTCTgacattttgagattttctcttcGA
TGTCATCTAGACGACTGGCCAACCTTTCTTCGAACCAGCTGCAGAAAGGT
CCCTGGCTTCGTCAATTGACTCTCTGATATCTTCCAAGAAATTATAATTT
AGcctgttgtttttgtatttaaaaAGAATCTCTGATTTTGCCTTCTTTCC
TTTACTGGAAAGTTGGATGTCCATTTTCCTTTTGATATCCTGTGTATCCT
CTATCAAAGAAGttaaattttgttgaaaagcACCAATCTGAGCCCAAGGA
TTCTGTGAAGGATCAAAAACGGGGATAAAAGTGTGATCACCTGTTTCACT
TGTGGTGCTTGTGTCCTCTGTGTTTGTAGACATCTCTAAAAGAGGATTTT
TCGACTTCTGGAccttctttgttttctttggaGGACGGTTCTCGTCTGCC
ATGATTATGGTTCTGCTCATCAAGTTGCTAGAAGTTTCTTGTTTGAGGCT
AAGTTCGACGTGtgattaaaactatttttggcTACCCTTTTGATTAGCAC
GCGAAACTCTTGAAATCTGAATAGTTTACGGAACGCACATTTAGGTCAAA
GTCTACATTTCTCAAAACGCCTCAACTAATATACGGAACGCC
Run BLAST on NCBI

protein sequence of TCONS_00063224-protein

>TCONS_00063224-protein ID=TCONS_00063224-protein|Name=TCONS_00063224-protein|organism=Clytia hemisphaerica|type=polypeptide|length=137bp
MSRTIIMADENRPPKKTKKVQKSKNPLLEMSTNTEDTSTTSETGDHTFIP
VFDPSQNPWAQIGAFQQNLTSLIEDTQDIKRKMDIQLSSKGKKAKSEILF
KYKNNRLNYNFLEDIRESIDEARDLSAAGSKKGWPVV
Run BLAST on NCBI

transcript from alignment at scaffold_384:173961..175002

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00063224 ID=TCONS_00063224|Name=TCONS_00063224|organism=Clytia hemisphaerica|type=transcript|length=1042bp|location=Sequence derived from alignment at scaffold_384:173961..175002 (Clytia hemisphaerica)
GGCGTTCCGTATATTAGTTGAGGCGTTTTGAGAAATGTAGACTTTGACCT AAATGTGCGTTCCGTAAACTATTCAGATTTCAAGAGTTTCGCGTGCTAAT CAAAAGGGTAgccaaaaatagttttaatcaCACGTCGAACTTAGCCTCAA ACAAGAAACTTCTAGCAACTTGATGAGCAGAACCATAATCATGGCAGACG AGAACCGTCCtccaaagaaaacaaagaaggTCCAGAAGTCGAAAAATCCT CTTTTAGAGATGTCTACAAACACAGAGGACACAAGCACCACAAGTGAAAC AGGTGATCACACTTTTATCCCCGTTTTTGATCCTTCACAGAATCCTTGGG CTCAGATTGGTgcttttcaacaaaatttaaCTTCTTTGATAGAGGATACA CAGGATATCAAAAGGAAAATGGACATCCAACTTTCCAGTAAAGGAAAGAA GGCAAAATCAGAGATTCTttttaaatacaaaaacaacaggCTAAATTATA ATTTCTTGGAAGATATCAGAGAGTCAATTGACGAAGCCAGGGACCTTTCT GCAGCTGGTTCGAAGAAAGGTTGGCCAGTCGTCTAGATGACATCgaagag aaaatctcaaaatgtcAGAAAGTAATCCGTATTGCAGACAAATCTCCGGG CGGTTGGGCCACTGTAGATGAATACGTACAGGACGAACTAGCATCTGATA GCGCTGACGATAAACGTATCCGTCAAGCCGAGAGTAGAGCGTTGCAGAAA AAGAAGCAGCAGTCCAGGTCAAATACAACTCGTACACATCAATATCGTCA ACAACTTCAGTTGCAGccttttcagcaaaatcggGTGCCATCATTCCAAC AGAATTTCAATCAGGTACCTCCATCGTTTCAACGACCACGATTTTTTATT CCACAGCAAGCAACCTCTCCAAGAATCGTATCTTTGCAGAATCCAATACA TCCCGTCAATGGTTGCTTCGAGTGCGGTCAGATTGGCCATTGGAGACATT CGTGCCCTAATAGGAAAGGTATGGAAGATGTTAATATTTCTC

Coding sequence (CDS) from alignment at scaffold_384:173961..175002

>TCONS_00063224 ID=TCONS_00063224|Name=TCONS_00063224|organism=Clytia hemisphaerica|type=CDS|length=414bp|location=Sequence derived from alignment at scaffold_384:173961..175002 (Clytia hemisphaerica)
ATGAGCAGAACCATAATCATGGCAGACGAGAACCGTCCtccaaagaaaac
aaagaaggTCCAGAAGTCGAAAAATCCTCTTTTAGAGATGTCTACAAACA
CAGAGGACACAAGCACCACAAGTGAAACAGGTGATCACACTTTTATCCCC
GTTTTTGATCCTTCACAGAATCCTTGGGCTCAGATTGGTgcttttcaaca
aaatttaaCTTCTTTGATAGAGGATACACAGGATATCAAAAGGAAAATGG
ACATCCAACTTTCCAGTAAAGGAAAGAAGGCAAAATCAGAGATTCTtttt
aaatacaaaaacaacaggCTAAATTATAATTTCTTGGAAGATATCAGAGA
GTCAATTGACGAAGCCAGGGACCTTTCTGCAGCTGGTTCGAAGAAAGGTT
GGCCAGTCGTCTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039614XLOC_039614Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063224-proteinTCONS_00063224-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063224-exon-scaffold_384-1491911889:173961..175002TCONS_00063224-exon-scaffold_384-1491911889:173961..175002Clytia hemisphaericaexon
TCONS_00063224-exon-scaffold_384-1510915933:173961..175002TCONS_00063224-exon-scaffold_384-1510915933:173961..175002Clytia hemisphaericaexon
TCONS_00063224-exon-scaffold_384-1575043694:173961..175002TCONS_00063224-exon-scaffold_384-1575043694:173961..175002Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_384supercontigscaffold_384:173961..175002 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.127771 0.124597 0.048223 0 0.0574354 0.226931 0.219026 0.307575 0 0.0444556 0 0.0283649 0.0849765 0.205914 0.0241842 0.0519067 0.0959172 0 0.0905489 0.0947529 0 0 0.0976665 0.0443965 0.137182 0.285674 0 0 0.0945439 0.0963253
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00063224 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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