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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00063205 ID=TCONS_00063205|Name=TCONS_00063205|organism=Clytia hemisphaerica|type=transcript|length=2480bpRun BLAST on NCBI protein sequence of TCONS_00063205-protein >TCONS_00063205-protein ID=TCONS_00063205-protein|Name=TCONS_00063205-protein|organism=Clytia hemisphaerica|type=polypeptide|length=461bp MSSIAGNSARKFEPGTECVAKYDFKGNSQADLPFRKGDLIEIKRATQDPNRun BLAST on NCBI transcript from alignment at scaffold_384:45636..64536- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00063205 ID=TCONS_00063205|Name=TCONS_00063205|organism=Clytia hemisphaerica|type=transcript|length=18901bp|location=Sequence derived from alignment at scaffold_384:45636..64536- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_384:45636..64536- >TCONS_00063205 ID=TCONS_00063205|Name=TCONS_00063205|organism=Clytia hemisphaerica|type=CDS|length=20790bp|location=Sequence derived from alignment at scaffold_384:45636..64536- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00063205 vs. Swiss-Prot (Human)
Match: CSK (Tyrosine-protein kinase CSK OS=Homo sapiens GN=CSK PE=1 SV=1) HSP 1 Score: 475.707 bits (1223), Expect = 2.985e-159 Identity = 239/446 (53.59%), Postives = 313/446 (70.18%), Query Frame = 1
Query: 79 GTECVAKYDFKGNSQADLPFRKGDLIEIKRATQDPNWYDARRVSDGKTGIIPINYVQQRRGLH----IHEMPWFFGKISRDEAEKLLKPRTVGLFLVRESTNYPGDYTLCVVSPSSQMKVEHYRITSKDNNKYSVDDETYFSTLSELVKHYKKDADGLCTTLVKSLKKEDNAISSTAFKESFQKEGWSVATEDITFKEKIGTGEFGEVFKGDYQGRAVAIKQLKDDTHAAQSFLREASVMTTLQHQNLVVLIGISFRGQDIL-ILTEHCSKGSLVNYLRSRGRAVIKQEEQLSFARDVCTGMEYLEEKHMIHRDLAARNVLLTDNPGSSCLLAKVSDFGLAKDQQIQQKDAEKFPVKWTAPEAIREKKFSSKSDVWSFGILLWEIFSFGRNPYPRVSLDNVLDKVLSGYRMEKPDACPPHIYQIMLKCWCTEPDKRPSFREMSPKL 1401
GTEC+AKY+F G ++ DLPF KGD++ I T+DPNWY A+ G+ GIIP NYVQ+R G+ + MPWF GKI+R++AE+LL P GLFLVRESTNYPGDYTLCV S KVEHYRI +K S+D+E YF L +LV+HY DADGLCT L+K E + A ++ F + GW++ +++ + IG GEFG+V GDY+G VA+K +K+D AQ+FL EASVMT L+H NLV L+G+ + L I+TE+ +KGSLV+YLRSRGR+V+ + L F+ DVC MEYLE + +HRDLAARNVL++++ +AKVSDFGL K+ Q D K PVKWTAPEA+REKKFS+KSDVWSFGILLWEI+SFGR PYPR+ L +V+ +V GY+M+ PD CPP +Y++M CW + RPSF ++ +L
Sbjct: 11 GTECIAKYNFHGTAEQDLPFCKGDVLTIVAVTKDPNWYKAKN-KVGREGIIPANYVQKREGVKAGTKLSLMPWFHGKITREQAERLLYPPETGLFLVRESTNYPGDYTLCV---SCDGKVEHYRIMYH-ASKLSIDEEVYFENLMQLVEHYTSDADGLCTRLIKPKVME----GTVAAQDEFYRSGWALNMKELKLLQTIGKGEFGDVMLGDYRGNKVAVKCIKNDA-TAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIVTEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLEGNNFVHRDLAARNVLVSEDN-----VAKVSDFGLTKEASSTQ-DTGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIPLKDVVPRVEKGYKMDAPDGCPPAVYEVMKNCWHLDAAMRPSFLQLREQL 440 The following BLAST results are available for this feature:
BLAST of TCONS_00063205 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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