TCONS_00063170 (transcript) - C. hemisphaerica

Overview
NameTCONS_00063170
Unique NameTCONS_00063170
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length395

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00063170 ID=TCONS_00063170|Name=TCONS_00063170|organism=Clytia hemisphaerica|type=transcript|length=395bp
GTCCGGTCCAACCTCTGTCGTAATCTTGATTGTGACTTCTCAGACTTTGA
AACTTTTAGcacaacttttgaaaatattcttgatgcTCATGCACCAATGA
AAAAGCGAACTGTCCGGGGAAATCAAAAACCTCATATGTCTAAAATCCTA
CGTAAAGCAATCATGGTTCGCTCATactacaaaaacaaagcaaataaGAC
CGGAAACCCCCTCTATAAAACCTTGTAtcgcaaacaaaaaaattatattg
taaattTGAATAGGAAAGCAAAGAGAAAATACTTTCGTGATTTAGGGaca
tcagaaaatttttggaaatctgcAAAACCATATTTCTCAAAGAAAGTCCA
ACATCACGAGAAAATCTTCTTGCTTGACGattcaaataaatcaaa
Run BLAST on NCBI

protein sequence of TCONS_00063170-protein

>TCONS_00063170-protein ID=TCONS_00063170-protein|Name=TCONS_00063170-protein|organism=Clytia hemisphaerica|type=polypeptide|length=131bp
VRSNLCRNLDCDFSDFETFSTTFENILDAHAPMKKRTVRGNQKPHMSKIL
RKAIMVRSYYKNKANKTGNPLYKTLYRKQKNYIVNLNRKAKRKYFRDLGT
SENFWKSAKPYFSKKVQHHEKIFLLDDSNKS
Run BLAST on NCBI

transcript from alignment at scaffold_383:117325..117719

Legend: exonthree_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00063170 ID=TCONS_00063170|Name=TCONS_00063170|organism=Clytia hemisphaerica|type=transcript|length=395bp|location=Sequence derived from alignment at scaffold_383:117325..117719 (Clytia hemisphaerica)
tttgatttatttgaatCGTCAAGCAAGAAGATTTTCTCGTGATGTTGGAC
TTTCTTTGAGAAATATGGTTTTgcagatttccaaaaattttctgatgtCC
CTAAATCACGAAAGTATTTTCTCTTTGCTTTCCTATTCAaatttacaata
taatttttttgtttgcgaTACAAGGTTTTATAGAGGGGGTTTCCGGTCtt
atttgctttgtttttgtagtATGAGCGAACCATGATTGCTTTACGTAGGA
TTTTAGACATATGAGGTTTTTGATTTCCCCGGACAGTTCGCTTTTTCATT
GGTGCATGAgcatcaagaatattttcaaaagttgtgCTAAAAGTTTCAAA
GTCTGAGAAGTCACAATCAAGATTACGACAGAGGTTGGACCGGAC

Coding sequence (CDS) from alignment at scaffold_383:117325..117719

>TCONS_00063170 ID=TCONS_00063170|Name=TCONS_00063170|organism=Clytia hemisphaerica|type=CDS|length=393bp|location=Sequence derived from alignment at scaffold_383:117325..117719 (Clytia hemisphaerica)
tgatttatttgaatCGTCAAGCAAGAAGATTTTCTCGTGATGTTGGACTT
TCTTTGAGAAATATGGTTTTgcagatttccaaaaattttctgatgtCCCT
AAATCACGAAAGTATTTTCTCTTTGCTTTCCTATTCAaatttacaatata
atttttttgtttgcgaTACAAGGTTTTATAGAGGGGGTTTCCGGTCttat
ttgctttgtttttgtagtATGAGCGAACCATGATTGCTTTACGTAGGATT
TTAGACATATGAGGTTTTTGATTTCCCCGGACAGTTCGCTTTTTCATTGG
TGCATGAgcatcaagaatattttcaaaagttgtgCTAAAAGTTTCAAAGT
CTGAGAAGTCACAATCAAGATTACGACAGAGGTTGGACCGGAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039578XLOC_039578Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063170-exon-scaffold_383-1491911889:117325..117719TCONS_00063170-exon-scaffold_383-1491911889:117325..117719Clytia hemisphaericaexon
TCONS_00063170-exon-scaffold_383-1510915933:117325..117719TCONS_00063170-exon-scaffold_383-1510915933:117325..117719Clytia hemisphaericaexon
TCONS_00063170-exon-scaffold_383-1575043694:117325..117719TCONS_00063170-exon-scaffold_383-1575043694:117325..117719Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063170-proteinTCONS_00063170-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_383supercontigscaffold_383:117325..117719 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.431932	0.211289	5.23298	3.31255	2.9008	3.35846	0.9644	0.199094	0	0.44261	0.580592	1.05393	0.277164	1.10314	0.143188	1.26908	0.405523	0.42435	0.523587	0.809577	0.437399	0.257311	0.614369	1.09662	0	0	0.286227	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00063170 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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