TCONS_00063146 (transcript) - C. hemisphaerica

Overview
NameTCONS_00063146
Unique NameTCONS_00063146
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length276

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00063146 ID=TCONS_00063146|Name=TCONS_00063146|organism=Clytia hemisphaerica|type=transcript|length=276bp
GCTTCATATCGAACAAACGAAGAAGACCTCTCAAATTTGGCAAAAGGAAT
TTTCAACCGAGCAGAGGAGATGCGTTGTCGAACTGTTTGTATCAGgatag
aaaaattcaaacttgttACGAAAAGTAGAACGCTAGAAGTCTTTCTGGAA
CAATTGAGACATACCAGATGTCAGTATTTGAAACTTGTTCGGTTTCAAGC
CAACCAGAAAACCCTTGGCGCTGTTTATAGAGAACTAAACAAATTTATGA
ACAAATTCAATTGTCCTAAATAAAAG
Run BLAST on NCBI

transcript from alignment at scaffold_382:41305..41580

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00063146 ID=TCONS_00063146|Name=TCONS_00063146|organism=Clytia hemisphaerica|type=transcript|length=276bp|location=Sequence derived from alignment at scaffold_382:41305..41580 (Clytia hemisphaerica)
CTTTTATTTAGGACAATTGAATTTGTTCATAAATTTGTTTAGTTCTCTAT
AAACAGCGCCAAGGGTTTTCTGGTTGGCTTGAAACCGAACAAGTTTCAAA
TACTGACATCTGGTATGTCTCAATTGTTCCAGAAAGACTTCTAGCGTTCT
ACTTTTCGTaacaagtttgaatttttctatcCTGATACAAACAGTTCGAC
AACGCATCTCCTCTGCTCGGTTGAAAATTCCTTTTGCCAAATTTGAGAGG
TCTTCTTCGTTTGTTCGATATGAAGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039560XLOC_039560Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063146-exon-scaffold_382-1491911889:41305..41580TCONS_00063146-exon-scaffold_382-1491911889:41305..41580Clytia hemisphaericaexon
TCONS_00063146-exon-scaffold_382-1510915933:41305..41580TCONS_00063146-exon-scaffold_382-1510915933:41305..41580Clytia hemisphaericaexon
TCONS_00063146-exon-scaffold_382-1575043694:41305..41580TCONS_00063146-exon-scaffold_382-1575043694:41305..41580Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_382supercontigscaffold_382:41305..41580 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.04286	2.54238	1.18078	1.15521	20.3921	9.44621	15.4187	13.8072	9.22736	5.98692	2.64139	6.59811	6.58894	1.44056	0	0	0	0	0	0	0	0	0	0	19.5942	21.4845	0.714983	1.5261	9.83868	5.30685
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00063146 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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